Wall clock time and date at job start Tue Mar 31 2020 12:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46478 * 2 1 4 4 C 1.53001 * 109.47028 * 240.00055 * 2 1 3 5 5 C 1.53002 * 109.47028 * 179.97438 * 4 2 1 6 6 C 1.50698 * 109.47303 * 180.02562 * 5 4 2 7 7 O 1.21287 * 119.99613 * 359.97438 * 6 5 4 8 8 N 1.34775 * 119.99913 * 180.02562 * 6 5 4 9 9 S 1.65600 * 119.99844 * 179.97438 * 8 6 5 10 10 O 1.42098 * 104.27576 * 308.92411 * 9 8 6 11 11 O 1.42102 * 104.27841 * 181.06538 * 9 8 6 12 12 C 1.81404 * 104.45074 * 64.99364 * 9 8 6 13 13 C 1.53000 * 109.46946 * 180.02562 * 12 9 8 14 14 C 1.50706 * 109.46735 * 180.02562 * 13 12 9 15 15 H 1.07996 * 119.99928 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99611 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00327 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99743 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46828 * 90.00241 * 18 16 14 20 20 H 1.48494 * 109.47178 * 209.99936 * 18 16 14 21 21 H 1.48500 * 109.47075 * 330.00183 * 18 16 14 22 22 C 1.52994 * 109.46988 * 59.99621 * 5 4 2 23 23 C 1.53001 * 109.47545 * 300.00062 * 22 5 4 24 24 H 1.09001 * 109.47104 * 180.02562 * 23 22 5 25 25 C 1.52997 * 109.47072 * 300.00413 * 23 22 5 26 26 C 1.52994 * 109.46988 * 119.99676 * 2 1 3 27 27 H 1.09009 * 109.47045 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47114 * 300.00093 * 1 2 3 29 29 H 1.08999 * 109.47500 * 60.00399 * 1 2 3 30 30 H 1.09001 * 109.47104 * 59.99933 * 4 2 1 31 31 H 1.08999 * 109.47160 * 299.99817 * 4 2 1 32 32 H 1.09000 * 109.46478 * 299.99945 * 5 4 2 33 33 H 0.96993 * 119.99975 * 359.97438 * 8 6 5 34 34 H 1.09002 * 109.47124 * 60.00022 * 12 9 8 35 35 H 1.09001 * 109.46975 * 300.00144 * 12 9 8 36 36 H 1.09001 * 109.47194 * 299.99756 * 13 12 9 37 37 H 1.08992 * 109.47399 * 59.99928 * 13 12 9 38 38 H 0.97000 * 120.00354 * 180.02562 * 17 16 14 39 39 H 1.09001 * 109.47711 * 60.00541 * 22 5 4 40 40 H 1.09011 * 109.47077 * 180.02562 * 22 5 4 41 41 H 1.09002 * 109.46953 * 180.02562 * 25 23 22 42 42 H 1.09002 * 109.47292 * 299.99380 * 25 23 22 43 43 H 1.08996 * 109.47509 * 59.99343 * 25 23 22 44 44 H 1.08994 * 109.47382 * 300.00067 * 26 2 1 45 45 H 1.09000 * 109.47246 * 60.00795 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7207 -1.2496 6 6 4.0724 -1.4305 -2.4803 7 8 3.2842 -1.8919 -3.2784 8 7 5.3975 -1.5535 -2.6936 9 16 5.9495 -2.3341 -4.0458 10 8 5.2507 -3.5714 -4.0460 11 8 7.3645 -2.2919 -3.9217 12 6 5.4002 -1.2926 -5.4257 13 6 5.8543 -1.9157 -6.7472 14 6 5.3985 -1.0501 -7.8936 15 1 4.8404 -0.1463 -7.6990 16 6 5.6941 -1.4122 -9.1907 17 7 6.3742 -2.5125 -9.4276 18 14 5.1285 -0.3396 -10.6117 19 1 6.1749 0.6687 -10.9178 20 1 4.8926 -1.1870 -11.8081 21 1 3.8684 0.3521 -10.2388 22 6 4.0805 -1.4415 -0.0003 23 6 3.5705 -0.7202 1.2489 24 1 3.9346 -1.2335 2.1389 25 6 4.0799 0.7225 1.2485 26 6 2.0400 -0.7212 1.2492 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.6766 -0.2074 -2.1392 31 1 1.6767 -1.7489 -1.2493 32 1 3.9329 0.3071 -1.2498 33 1 6.0277 -1.1849 -2.0552 34 1 5.8336 -0.2975 -5.3249 35 1 4.3128 -1.2181 -5.4142 36 1 6.9417 -1.9905 -6.7589 37 1 5.4207 -2.9106 -6.8478 38 1 6.5825 -2.7671 -10.3401 39 1 3.7177 -2.4693 0.0000 40 1 5.1706 -1.4407 -0.0003 41 1 3.7169 1.2361 2.1388 42 1 5.1699 0.7229 1.2484 43 1 3.7163 1.2360 0.3585 44 1 1.6767 -0.2073 2.1392 45 1 1.6768 -1.7489 1.2492 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183651937.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:42 Heat of formation + Delta-G solvation = -177.668697 kcal Electronic energy + Delta-G solvation = -25478.202458 eV Core-core repulsion = 21813.189302 eV Total energy + Delta-G solvation = -3665.013156 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.77280 -39.57840 -38.29425 -37.25297 -35.98868 -35.71169 -33.97029 -33.20764 -32.74281 -27.68170 -27.60979 -27.31578 -25.41515 -23.65924 -22.29687 -21.96559 -20.75342 -19.61800 -19.36180 -18.73980 -18.28696 -17.35340 -16.75651 -16.57344 -16.50021 -16.23080 -15.76855 -15.34307 -15.17334 -14.76777 -14.61419 -14.50417 -14.30658 -13.84394 -13.76811 -13.47873 -13.39178 -13.28436 -13.05018 -12.96200 -12.86400 -12.64790 -12.46742 -12.33685 -12.26996 -12.12147 -12.03211 -11.98669 -11.83900 -11.75062 -11.57015 -11.15706 -11.09610 -10.89027 -10.77249 -10.67059 -8.28901 -6.43319 -1.02200 0.99491 1.39197 1.41771 1.42306 1.53072 2.35708 2.54393 2.97910 3.04523 3.21866 3.62181 3.70243 3.79107 3.98893 4.01591 4.09285 4.16393 4.21392 4.34354 4.41531 4.48107 4.59390 4.66165 4.82070 4.84037 4.86997 5.00284 5.04886 5.07842 5.19634 5.20441 5.20682 5.22415 5.29470 5.34766 5.43933 5.50379 5.54081 5.64348 5.67867 5.69313 6.01619 6.43795 6.69208 7.26758 8.83625 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019016 B = 0.003212 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.084888 B = 8716.258716 C = 9573.773417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.087 4.087 3 H 0.088 0.912 4 C -0.102 4.102 5 C -0.099 4.099 6 C 0.533 3.467 7 O -0.531 6.531 8 N -1.036 6.036 9 S 2.597 3.403 10 O -0.980 6.980 11 O -0.971 6.971 12 C -0.578 4.578 13 C 0.022 3.978 14 C -0.542 4.542 15 H 0.074 0.926 16 C -0.003 4.003 17 N -0.933 5.933 18 Si 0.977 3.023 19 H -0.266 1.266 20 H -0.282 1.282 21 H -0.260 1.260 22 C -0.114 4.114 23 C -0.084 4.084 24 H 0.084 0.916 25 C -0.156 4.156 26 C -0.111 4.111 27 H 0.047 0.953 28 H 0.067 0.933 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.141 0.859 33 H 0.449 0.551 34 H 0.153 0.847 35 H 0.133 0.867 36 H 0.015 0.985 37 H 0.004 0.996 38 H 0.269 0.731 39 H 0.059 0.941 40 H 0.087 0.913 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.076 0.924 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.153 10.273 26.074 28.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.105 4.105 3 H 0.107 0.893 4 C -0.140 4.140 5 C -0.122 4.122 6 C 0.322 3.678 7 O -0.404 6.404 8 N -0.804 5.804 9 S 2.696 3.304 10 O -0.970 6.970 11 O -0.961 6.961 12 C -0.711 4.711 13 C -0.017 4.017 14 C -0.581 4.581 15 H 0.092 0.908 16 C -0.202 4.202 17 N -0.572 5.572 18 Si 0.800 3.200 19 H -0.191 1.191 20 H -0.207 1.207 21 H -0.184 1.184 22 C -0.152 4.152 23 C -0.102 4.102 24 H 0.102 0.898 25 C -0.213 4.213 26 C -0.149 4.149 27 H 0.066 0.934 28 H 0.086 0.914 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.159 0.841 33 H 0.290 0.710 34 H 0.171 0.829 35 H 0.151 0.849 36 H 0.034 0.966 37 H 0.022 0.978 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.106 0.894 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.095 0.905 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.168 8.993 25.427 27.907 hybrid contribution -0.040 0.400 -1.156 1.224 sum -7.209 9.394 24.271 27.005 Atomic orbital electron populations 1.21828 0.95012 1.01658 1.02094 1.21161 0.95651 1.00208 0.93501 0.89337 1.21516 0.92031 1.01415 0.99047 1.21642 0.98172 1.02073 0.90302 1.21641 0.80279 0.77082 0.88828 1.90898 1.55168 1.46366 1.47982 1.54877 1.15769 1.68906 1.40802 1.05425 0.73408 0.75610 0.75961 1.93543 1.75123 1.42356 1.86001 1.93559 1.29643 1.87191 1.85734 1.30236 1.12674 1.15112 1.13113 1.18830 0.96261 0.95933 0.90635 1.21475 1.36256 1.09185 0.91151 0.90763 1.26132 0.94875 0.96735 1.02422 1.70094 1.40129 1.25219 1.21786 0.85275 0.79191 0.78229 0.77338 1.19116 1.20729 1.18431 1.21715 1.01855 0.99121 0.92519 1.21073 0.95314 0.97081 0.96755 0.89773 1.22000 1.01539 0.95143 1.02574 1.21681 0.95049 1.00504 0.97656 0.93398 0.91406 0.92973 0.91922 0.92796 0.84111 0.71020 0.82947 0.84881 0.96622 0.97809 0.92258 0.92239 0.89400 0.91925 0.91829 0.91817 0.90506 0.92659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.19 71.98 0.66 -1.16 16 2 C -0.09 -1.04 2.45 -10.79 -0.03 -1.06 16 3 H 0.09 0.85 6.43 -2.39 -0.02 0.83 16 4 C -0.10 -1.80 3.77 30.60 0.12 -1.68 16 5 C -0.10 -1.58 2.25 -11.54 -0.03 -1.60 16 6 C 0.53 13.61 6.89 87.66 0.60 14.21 16 7 O -0.53 -18.76 14.09 13.33 0.19 -18.57 16 8 N -1.04 -24.93 5.50 -173.53 -0.95 -25.88 16 9 S 2.60 95.91 5.11 -56.49 -0.29 95.63 16 10 O -0.98 -44.83 17.04 -120.72 -2.06 -46.88 16 11 O -0.97 -38.45 18.08 -127.65 -2.31 -40.76 16 12 C -0.58 -23.40 5.82 71.98 0.42 -22.99 16 13 C 0.02 1.21 4.98 29.85 0.15 1.36 16 14 C -0.54 -30.93 9.11 25.60 0.23 -30.70 16 15 H 0.07 3.94 7.74 -2.91 -0.02 3.91 16 16 C 0.00 -0.18 5.46 84.66 0.46 0.29 16 17 N -0.93 -57.56 13.29 21.45 0.28 -57.28 16 18 Si 0.98 44.04 29.54 68.60 2.03 46.07 16 19 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 20 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 21 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 22 C -0.11 -1.45 4.63 30.59 0.14 -1.31 16 23 C -0.08 -0.75 3.20 -10.78 -0.03 -0.79 16 24 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 25 C -0.16 -1.04 8.50 71.98 0.61 -0.43 16 26 C -0.11 -1.13 4.74 30.61 0.14 -0.99 16 27 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 28 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 1.25 8.10 -2.39 -0.02 1.23 16 31 H 0.05 1.17 8.10 -2.39 -0.02 1.15 16 32 H 0.14 1.39 6.43 -2.39 -0.02 1.38 16 33 H 0.45 6.49 8.21 -96.75 -0.79 5.70 16 34 H 0.15 5.07 8.14 -2.39 -0.02 5.05 16 35 H 0.13 5.34 7.19 -2.39 -0.02 5.32 16 36 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 38 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 39 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.09 0.82 7.57 -2.38 -0.02 0.80 16 41 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 42 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 43 H 0.06 0.41 4.81 -2.39 -0.01 0.40 16 44 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 45 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -81.07 365.52 0.53 -80.54 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: 0.18 Total: 13.99 kcal Atomic # 6 Polarization: -50.30 SS G_CDS: 3.46 Total: -46.85 kcal Atomic # 7 Polarization: -82.49 SS G_CDS: -0.67 Total: -83.16 kcal Atomic # 8 Polarization: -102.04 SS G_CDS: -4.18 Total: -106.21 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Atomic # 16 Polarization: 95.91 SS G_CDS: -0.29 Total: 95.63 kcal Total: -81.07 0.53 -80.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183651937.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.132 kcal (2) G-P(sol) polarization free energy of solvation -81.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds