Wall clock time and date at job start Tue Mar 31 2020 12:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47600 * 2 1 4 4 C 1.52996 * 109.47217 * 120.00647 * 2 1 3 5 5 C 1.53002 * 109.47340 * 59.99402 * 4 2 1 6 6 C 1.50706 * 109.46925 * 180.02562 * 5 4 2 7 7 O 1.21279 * 120.00072 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99762 * 179.97438 * 6 5 4 9 9 S 1.65598 * 120.00197 * 180.02562 * 8 6 5 10 10 O 1.42093 * 104.27976 * 181.07659 * 9 8 6 11 11 O 1.42103 * 104.27680 * 308.92957 * 9 8 6 12 12 C 1.81401 * 104.44765 * 64.99898 * 9 8 6 13 13 C 1.53005 * 109.46772 * 180.02562 * 12 9 8 14 14 C 1.50700 * 109.46886 * 180.02562 * 13 12 9 15 15 H 1.08006 * 120.00048 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00039 * 179.97438 * 14 13 12 17 17 N 1.31517 * 120.00115 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 120.00118 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47353 * 89.99741 * 18 16 14 20 20 H 1.48498 * 109.46985 * 210.00192 * 18 16 14 21 21 H 1.48508 * 109.46857 * 329.99812 * 18 16 14 22 22 C 1.52997 * 109.47092 * 60.00461 * 5 4 2 23 23 C 1.52996 * 109.46975 * 300.00162 * 22 5 4 24 24 H 1.09004 * 109.47368 * 299.99783 * 23 22 5 25 25 C 1.53000 * 109.47328 * 179.97438 * 23 22 5 26 26 C 1.53002 * 109.47343 * 59.99992 * 23 22 5 27 27 H 1.08996 * 109.46698 * 299.99779 * 1 2 3 28 28 H 1.09002 * 109.46838 * 59.99275 * 1 2 3 29 29 H 1.09001 * 109.47142 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46785 * 299.99710 * 4 2 1 31 31 H 1.09004 * 109.47694 * 179.97438 * 4 2 1 32 32 H 1.09000 * 109.47312 * 300.00340 * 5 4 2 33 33 H 0.96999 * 120.00047 * 0.02562 * 8 6 5 34 34 H 1.08992 * 109.47235 * 300.00394 * 12 9 8 35 35 H 1.09005 * 109.46604 * 60.00613 * 12 9 8 36 36 H 1.09002 * 109.47211 * 300.00057 * 13 12 9 37 37 H 1.08999 * 109.47281 * 60.00338 * 13 12 9 38 38 H 0.96994 * 120.00012 * 180.02562 * 17 16 14 39 39 H 1.09000 * 109.47140 * 59.99774 * 22 5 4 40 40 H 1.08992 * 109.47280 * 179.97438 * 22 5 4 41 41 H 1.09000 * 109.46968 * 299.99723 * 25 23 22 42 42 H 1.09001 * 109.47194 * 59.99524 * 25 23 22 43 43 H 1.09002 * 109.47398 * 179.97438 * 25 23 22 44 44 H 1.09002 * 109.47067 * 180.02562 * 26 23 22 45 45 H 1.09000 * 109.47312 * 60.00057 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 1.5299 -2.1639 1.2491 6 6 2.0319 -2.8742 2.4799 7 8 2.7285 -2.2846 3.2786 8 7 1.7057 -4.1643 2.6934 9 16 2.2566 -4.9447 4.0461 10 8 1.7451 -6.2646 3.9220 11 8 3.6561 -4.6986 4.0471 12 6 1.4571 -4.0790 5.4252 13 6 1.8922 -4.7147 6.7472 14 6 1.2275 -3.9960 7.8929 15 1 0.5610 -3.1688 7.6977 16 6 1.4694 -4.3949 9.1903 17 7 2.2806 -5.4025 9.4281 18 14 0.6449 -3.5045 10.6105 19 1 -0.6544 -4.1555 10.9155 20 1 1.5215 -3.5639 11.8077 21 1 0.4123 -2.0861 10.2371 22 6 2.0399 -2.8851 -0.0001 23 6 1.5300 -2.1637 -1.2493 24 1 0.4399 -2.1637 -1.2494 25 6 2.0404 -2.8846 -2.4986 26 6 2.0401 -0.7213 -1.2493 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6767 -0.2075 2.1392 31 1 3.1301 -0.7218 1.2490 32 1 0.4399 -2.1638 1.2491 33 1 1.1482 -4.6357 2.0548 34 1 1.7495 -3.0291 5.4136 35 1 0.3745 -4.1559 5.3237 36 1 1.6001 -5.7648 6.7590 37 1 2.9748 -4.6375 6.8485 38 1 2.4505 -5.6834 10.3408 39 1 3.1299 -2.8851 -0.0002 40 1 1.6769 -3.9128 0.0000 41 1 3.1304 -2.8842 -2.4984 42 1 1.6774 -3.9124 -2.4989 43 1 1.6767 -2.3709 -3.3886 44 1 1.6764 -0.2073 -2.1390 45 1 3.1301 -0.7213 -1.2493 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183651949.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:47 Heat of formation + Delta-G solvation = -152.202014 kcal Electronic energy + Delta-G solvation = -25477.035608 eV Core-core repulsion = 21813.126770 eV Total energy + Delta-G solvation = -3663.908838 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.81220 -38.76966 -36.68074 -35.60610 -34.53214 -33.89356 -33.45719 -32.04597 -31.17481 -27.13232 -26.73947 -25.63340 -24.47584 -21.98318 -21.60464 -20.87938 -19.39500 -18.93420 -17.90537 -17.44337 -16.50570 -15.97762 -15.69664 -15.33901 -15.10576 -14.94777 -14.54810 -14.38512 -14.21687 -13.77377 -13.68645 -13.40189 -12.97190 -12.57966 -12.54594 -12.36888 -12.12964 -11.93667 -11.79744 -11.71784 -11.62325 -11.58223 -11.42972 -11.16772 -11.08081 -10.99921 -10.88634 -10.82615 -10.56148 -10.40411 -10.34458 -10.25979 -9.96801 -9.69518 -9.17419 -8.49458 -6.11696 -4.17179 0.51897 2.10984 2.75965 3.27262 3.33391 3.36823 3.95878 4.10705 4.24064 4.31759 4.37935 4.55903 4.68999 4.72287 4.75414 4.88647 4.94828 4.99770 5.08218 5.12190 5.23598 5.30382 5.34243 5.37854 5.47977 5.58672 5.59026 5.61440 5.70111 5.73137 5.77709 5.80141 5.90260 5.97165 6.02101 6.06917 6.18822 6.46292 6.66307 7.28804 7.35547 7.50285 7.81349 8.17248 8.85765 9.47353 10.99476 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.020789 B = 0.003180 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.538033 B = 8804.076737 C = 9696.359324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.092 4.092 3 H 0.074 0.926 4 C -0.100 4.100 5 C -0.109 4.109 6 C 0.536 3.464 7 O -0.487 6.487 8 N -1.059 6.059 9 S 2.565 3.435 10 O -0.956 6.956 11 O -0.939 6.939 12 C -0.576 4.576 13 C 0.029 3.971 14 C -0.519 4.519 15 H 0.062 0.938 16 C 0.058 3.942 17 N -0.891 5.891 18 Si 0.901 3.099 19 H -0.279 1.279 20 H -0.284 1.284 21 H -0.272 1.272 22 C -0.111 4.111 23 C -0.091 4.091 24 H 0.077 0.923 25 C -0.149 4.149 26 C -0.112 4.112 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.109 0.891 33 H 0.427 0.573 34 H 0.131 0.869 35 H 0.121 0.879 36 H 0.034 0.966 37 H 0.036 0.964 38 H 0.265 0.735 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.063 0.937 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.834 8.502 -24.587 26.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.110 4.110 3 H 0.093 0.907 4 C -0.138 4.138 5 C -0.132 4.132 6 C 0.322 3.678 7 O -0.358 6.358 8 N -0.821 5.821 9 S 2.665 3.335 10 O -0.946 6.946 11 O -0.929 6.929 12 C -0.710 4.710 13 C -0.010 4.010 14 C -0.559 4.559 15 H 0.080 0.920 16 C -0.145 4.145 17 N -0.529 5.529 18 Si 0.729 3.271 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.197 1.197 22 C -0.148 4.148 23 C -0.110 4.110 24 H 0.095 0.905 25 C -0.206 4.206 26 C -0.149 4.149 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.127 0.873 33 H 0.262 0.738 34 H 0.149 0.851 35 H 0.139 0.861 36 H 0.052 0.948 37 H 0.054 0.946 38 H 0.075 0.925 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.081 0.919 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.594 8.105 -23.922 25.513 hybrid contribution -1.159 0.518 0.696 1.448 sum -4.754 8.623 -23.227 25.228 Atomic orbital electron populations 1.21977 0.95289 1.02053 1.01769 1.21126 0.95946 0.99405 0.94543 0.90715 1.21467 1.01808 0.92358 0.98176 1.21520 1.02724 0.96711 0.92245 1.20711 0.78333 0.80637 0.88157 1.90903 1.33876 1.64826 1.46166 1.55435 1.62328 1.22197 1.42094 1.06706 0.76009 0.74982 0.75809 1.93585 1.81407 1.34367 1.85291 1.93595 1.28973 1.85193 1.85130 1.30338 1.11933 1.13837 1.14920 1.18990 0.98200 0.96435 0.87348 1.20980 1.28086 1.16675 0.90128 0.91966 1.25067 0.95163 0.95140 0.99106 1.69954 1.35492 1.26519 1.20897 0.86445 0.79216 0.80015 0.81472 1.20464 1.20971 1.19707 1.21647 1.02000 0.98786 0.92409 1.21160 1.00771 0.94932 0.94097 0.90502 1.21837 1.01408 1.00279 0.97080 1.21667 1.00867 0.94869 0.97504 0.92510 0.92763 0.92140 0.90667 0.90708 0.87346 0.73782 0.85087 0.86089 0.94780 0.94580 0.92502 0.90801 0.91146 0.92568 0.92541 0.92603 0.91855 0.91713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 8.50 37.16 0.32 -0.63 16 2 C -0.09 -0.63 3.20 -90.62 -0.29 -0.92 16 3 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 4 C -0.10 -0.92 4.02 -26.73 -0.11 -1.03 16 5 C -0.11 -0.98 2.25 -91.77 -0.21 -1.19 16 6 C 0.54 7.11 6.89 -10.98 -0.08 7.03 16 7 O -0.49 -8.50 14.08 -11.57 -0.16 -8.66 16 8 N -1.06 -13.55 5.50 31.22 0.17 -13.37 16 9 S 2.56 47.26 5.11 -107.50 -0.55 46.71 16 10 O -0.96 -19.12 18.08 -57.54 -1.04 -20.16 16 11 O -0.94 -20.87 17.04 -64.79 -1.10 -21.98 16 12 C -0.58 -11.59 5.82 37.16 0.22 -11.37 16 13 C 0.03 0.77 4.98 -27.88 -0.14 0.63 16 14 C -0.52 -14.64 9.11 -34.44 -0.31 -14.95 16 15 H 0.06 1.66 7.74 -52.48 -0.41 1.26 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -26.78 13.29 55.43 0.74 -26.04 16 18 Si 0.90 21.49 29.54 -169.99 -5.02 16.46 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 21 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 22 C -0.11 -0.84 4.38 -26.73 -0.12 -0.96 16 23 C -0.09 -0.55 2.45 -90.62 -0.22 -0.78 16 24 H 0.08 0.42 6.43 -51.93 -0.33 0.09 16 25 C -0.15 -0.84 9.19 37.16 0.34 -0.50 16 26 C -0.11 -0.70 4.73 -26.73 -0.13 -0.82 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.34 4.81 -51.93 -0.25 0.09 16 30 H 0.07 0.76 8.10 -51.93 -0.42 0.33 16 31 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 32 H 0.11 0.74 6.43 -51.93 -0.33 0.41 16 33 H 0.43 3.68 8.21 -34.47 -0.28 3.39 16 34 H 0.13 2.60 7.19 -51.93 -0.37 2.22 16 35 H 0.12 2.09 8.14 -51.92 -0.42 1.67 16 36 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.45 7.56 -51.93 -0.39 0.06 16 41 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 365.52 15.07 5.51 5.51 Total: -1.00 -36.28 365.52 -9.70 -45.99 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -7.42 Total: -0.54 kcal Atomic # 6 Polarization: -23.09 SS G_CDS: -0.82 Total: -23.92 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: 0.91 Total: -39.42 kcal Atomic # 8 Polarization: -48.49 SS G_CDS: -2.31 Total: -50.79 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 47.26 SS G_CDS: -0.55 Total: 46.71 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.28 -9.70 -45.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183651949.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.214 kcal (2) G-P(sol) polarization free energy of solvation -36.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds