Wall clock time and date at job start Tue Mar 31 2020 12:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47600 * 2 1 4 4 C 1.52996 * 109.47217 * 120.00647 * 2 1 3 5 5 C 1.53002 * 109.47340 * 59.99402 * 4 2 1 6 6 C 1.50706 * 109.46925 * 180.02562 * 5 4 2 7 7 O 1.21279 * 120.00072 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99762 * 179.97438 * 6 5 4 9 9 S 1.65598 * 120.00197 * 180.02562 * 8 6 5 10 10 O 1.42093 * 104.27976 * 181.07659 * 9 8 6 11 11 O 1.42103 * 104.27680 * 308.92957 * 9 8 6 12 12 C 1.81401 * 104.44765 * 64.99898 * 9 8 6 13 13 C 1.53005 * 109.46772 * 180.02562 * 12 9 8 14 14 C 1.50700 * 109.46886 * 180.02562 * 13 12 9 15 15 H 1.08006 * 120.00048 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00039 * 179.97438 * 14 13 12 17 17 N 1.31517 * 120.00115 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 120.00118 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47353 * 89.99741 * 18 16 14 20 20 H 1.48498 * 109.46985 * 210.00192 * 18 16 14 21 21 H 1.48508 * 109.46857 * 329.99812 * 18 16 14 22 22 C 1.52997 * 109.47092 * 60.00461 * 5 4 2 23 23 C 1.52996 * 109.46975 * 300.00162 * 22 5 4 24 24 H 1.09004 * 109.47368 * 299.99783 * 23 22 5 25 25 C 1.53000 * 109.47328 * 179.97438 * 23 22 5 26 26 C 1.53002 * 109.47343 * 59.99992 * 23 22 5 27 27 H 1.08996 * 109.46698 * 299.99779 * 1 2 3 28 28 H 1.09002 * 109.46838 * 59.99275 * 1 2 3 29 29 H 1.09001 * 109.47142 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46785 * 299.99710 * 4 2 1 31 31 H 1.09004 * 109.47694 * 179.97438 * 4 2 1 32 32 H 1.09000 * 109.47312 * 300.00340 * 5 4 2 33 33 H 0.96999 * 120.00047 * 0.02562 * 8 6 5 34 34 H 1.08992 * 109.47235 * 300.00394 * 12 9 8 35 35 H 1.09005 * 109.46604 * 60.00613 * 12 9 8 36 36 H 1.09002 * 109.47211 * 300.00057 * 13 12 9 37 37 H 1.08999 * 109.47281 * 60.00338 * 13 12 9 38 38 H 0.96994 * 120.00012 * 180.02562 * 17 16 14 39 39 H 1.09000 * 109.47140 * 59.99774 * 22 5 4 40 40 H 1.08992 * 109.47280 * 179.97438 * 22 5 4 41 41 H 1.09000 * 109.46968 * 299.99723 * 25 23 22 42 42 H 1.09001 * 109.47194 * 59.99524 * 25 23 22 43 43 H 1.09002 * 109.47398 * 179.97438 * 25 23 22 44 44 H 1.09002 * 109.47067 * 180.02562 * 26 23 22 45 45 H 1.09000 * 109.47312 * 60.00057 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 1.5299 -2.1639 1.2491 6 6 2.0319 -2.8742 2.4799 7 8 2.7285 -2.2846 3.2786 8 7 1.7057 -4.1643 2.6934 9 16 2.2566 -4.9447 4.0461 10 8 1.7451 -6.2646 3.9220 11 8 3.6561 -4.6986 4.0471 12 6 1.4571 -4.0790 5.4252 13 6 1.8922 -4.7147 6.7472 14 6 1.2275 -3.9960 7.8929 15 1 0.5610 -3.1688 7.6977 16 6 1.4694 -4.3949 9.1903 17 7 2.2806 -5.4025 9.4281 18 14 0.6449 -3.5045 10.6105 19 1 -0.6544 -4.1555 10.9155 20 1 1.5215 -3.5639 11.8077 21 1 0.4123 -2.0861 10.2371 22 6 2.0399 -2.8851 -0.0001 23 6 1.5300 -2.1637 -1.2493 24 1 0.4399 -2.1637 -1.2494 25 6 2.0404 -2.8846 -2.4986 26 6 2.0401 -0.7213 -1.2493 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6767 -0.2075 2.1392 31 1 3.1301 -0.7218 1.2490 32 1 0.4399 -2.1638 1.2491 33 1 1.1482 -4.6357 2.0548 34 1 1.7495 -3.0291 5.4136 35 1 0.3745 -4.1559 5.3237 36 1 1.6001 -5.7648 6.7590 37 1 2.9748 -4.6375 6.8485 38 1 2.4505 -5.6834 10.3408 39 1 3.1299 -2.8851 -0.0002 40 1 1.6769 -3.9128 0.0000 41 1 3.1304 -2.8842 -2.4984 42 1 1.6774 -3.9124 -2.4989 43 1 1.6767 -2.3709 -3.3886 44 1 1.6764 -0.2073 -2.1390 45 1 3.1301 -0.7213 -1.2493 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183651949.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:46 Heat of formation + Delta-G solvation = -177.705441 kcal Electronic energy + Delta-G solvation = -25478.141520 eV Core-core repulsion = 21813.126770 eV Total energy + Delta-G solvation = -3665.014749 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.77519 -39.58334 -38.29400 -37.25245 -35.98733 -35.69667 -34.00081 -33.20708 -32.74849 -27.68593 -27.61873 -27.26991 -25.39336 -23.67555 -22.56953 -21.71208 -20.74837 -19.60466 -19.32334 -18.77472 -18.29962 -17.37280 -16.76703 -16.57148 -16.53724 -16.30018 -15.68546 -15.33245 -15.17347 -14.80432 -14.52159 -14.49402 -14.34695 -13.82690 -13.74163 -13.46410 -13.39591 -13.28561 -13.10564 -12.96238 -12.86482 -12.64965 -12.47962 -12.33667 -12.27109 -12.17523 -12.03502 -11.99488 -11.79789 -11.71882 -11.60420 -11.15520 -11.09686 -10.86597 -10.78979 -10.67119 -8.29002 -6.43418 -1.02122 0.99507 1.39086 1.41654 1.42385 1.52932 2.35609 2.54532 2.97950 3.04424 3.21625 3.61067 3.71106 3.78524 3.98481 4.01716 4.10944 4.17735 4.20885 4.34006 4.41880 4.44514 4.58243 4.66195 4.82369 4.83640 4.87652 5.01375 5.07524 5.09193 5.14618 5.19608 5.20981 5.23125 5.31235 5.33951 5.43806 5.50357 5.52799 5.64353 5.68213 5.68789 6.01584 6.43753 6.69156 7.26685 8.83552 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.020789 B = 0.003180 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.538033 B = 8804.076737 C = 9696.359324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.086 4.086 3 H 0.074 0.926 4 C -0.102 4.102 5 C -0.099 4.099 6 C 0.533 3.467 7 O -0.531 6.531 8 N -1.036 6.036 9 S 2.597 3.403 10 O -0.971 6.971 11 O -0.980 6.980 12 C -0.578 4.578 13 C 0.022 3.978 14 C -0.542 4.542 15 H 0.074 0.926 16 C -0.003 4.003 17 N -0.933 5.933 18 Si 0.976 3.024 19 H -0.266 1.266 20 H -0.282 1.282 21 H -0.260 1.260 22 C -0.114 4.114 23 C -0.086 4.086 24 H 0.093 0.907 25 C -0.148 4.148 26 C -0.111 4.111 27 H 0.051 0.949 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.142 0.858 33 H 0.449 0.551 34 H 0.133 0.867 35 H 0.153 0.847 36 H 0.015 0.985 37 H 0.004 0.996 38 H 0.269 0.731 39 H 0.057 0.943 40 H 0.087 0.913 41 H 0.047 0.953 42 H 0.060 0.940 43 H 0.064 0.936 44 H 0.076 0.924 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.331 9.583 -26.392 29.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.105 4.105 3 H 0.093 0.907 4 C -0.141 4.141 5 C -0.122 4.122 6 C 0.322 3.678 7 O -0.404 6.404 8 N -0.804 5.804 9 S 2.696 3.304 10 O -0.961 6.961 11 O -0.970 6.970 12 C -0.711 4.711 13 C -0.017 4.017 14 C -0.581 4.581 15 H 0.092 0.908 16 C -0.202 4.202 17 N -0.572 5.572 18 Si 0.799 3.201 19 H -0.191 1.191 20 H -0.207 1.207 21 H -0.184 1.184 22 C -0.152 4.152 23 C -0.104 4.104 24 H 0.112 0.888 25 C -0.206 4.206 26 C -0.148 4.148 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.159 0.841 33 H 0.290 0.710 34 H 0.151 0.849 35 H 0.171 0.829 36 H 0.034 0.966 37 H 0.022 0.978 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.106 0.894 41 H 0.066 0.934 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.095 0.905 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.120 9.168 -25.746 28.007 hybrid contribution -0.348 0.197 1.162 1.229 sum -6.467 9.365 -24.584 27.091 Atomic orbital electron populations 1.21981 0.94157 1.02761 1.02125 1.21085 0.96788 0.99108 0.93490 0.90739 1.21481 1.00663 0.92830 0.99085 1.21638 1.04392 0.95829 0.90303 1.21638 0.77197 0.80144 0.88838 1.90895 1.35933 1.65621 1.47957 1.54880 1.62479 1.22232 1.40780 1.05419 0.74743 0.74270 0.75954 1.93558 1.81395 1.35440 1.85729 1.93544 1.31748 1.85738 1.86004 1.30237 1.14186 1.13616 1.13104 1.18830 0.96251 0.95944 0.90626 1.21478 1.28321 1.17105 0.91159 0.90756 1.26132 0.95719 0.95897 1.02413 1.70096 1.37104 1.28283 1.21761 0.85279 0.78307 0.79121 0.77349 1.19118 1.20723 1.18429 1.21740 1.01229 0.99883 0.92315 1.21150 1.01624 0.94362 0.93275 0.88847 1.21832 1.00945 1.00642 0.97157 1.21671 1.00350 0.95238 0.97585 0.92993 0.91666 0.91195 0.91877 0.92754 0.84067 0.71003 0.84878 0.82943 0.96623 0.97809 0.92257 0.92370 0.89400 0.93388 0.92077 0.91696 0.90507 0.92718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 8.50 71.98 0.61 -0.80 16 2 C -0.09 -1.02 3.20 -10.79 -0.03 -1.06 16 3 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 4 C -0.10 -1.80 4.02 30.59 0.12 -1.68 16 5 C -0.10 -1.57 2.25 -11.54 -0.03 -1.60 16 6 C 0.53 13.59 6.89 87.66 0.60 14.20 16 7 O -0.53 -18.74 14.08 13.35 0.19 -18.55 16 8 N -1.04 -24.89 5.50 -173.53 -0.95 -25.84 16 9 S 2.60 95.85 5.11 -56.49 -0.29 95.56 16 10 O -0.97 -38.41 18.08 -127.65 -2.31 -40.72 16 11 O -0.98 -44.82 17.04 -120.72 -2.06 -46.88 16 12 C -0.58 -23.39 5.82 71.98 0.42 -22.97 16 13 C 0.02 1.22 4.98 29.85 0.15 1.37 16 14 C -0.54 -30.93 9.11 25.60 0.23 -30.70 16 15 H 0.07 3.94 7.74 -2.91 -0.02 3.92 16 16 C 0.00 -0.18 5.46 84.65 0.46 0.29 16 17 N -0.93 -57.59 13.29 21.45 0.28 -57.30 16 18 Si 0.98 44.04 29.54 68.60 2.03 46.07 16 19 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 20 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 21 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 22 C -0.11 -1.46 4.38 30.59 0.13 -1.32 16 23 C -0.09 -0.78 2.45 -10.79 -0.03 -0.81 16 24 H 0.09 0.60 6.43 -2.39 -0.02 0.58 16 25 C -0.15 -1.28 9.19 71.98 0.66 -0.62 16 26 C -0.11 -1.13 4.73 30.60 0.14 -0.99 16 27 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.07 0.50 4.81 -2.39 -0.01 0.49 16 30 H 0.06 1.25 8.10 -2.38 -0.02 1.23 16 31 H 0.05 1.16 8.10 -2.39 -0.02 1.14 16 32 H 0.14 1.38 6.43 -2.39 -0.02 1.36 16 33 H 0.45 6.45 8.21 -96.75 -0.79 5.65 16 34 H 0.13 5.33 7.19 -2.39 -0.02 5.32 16 35 H 0.15 5.07 8.14 -2.39 -0.02 5.05 16 36 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 38 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 39 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.09 0.82 7.56 -2.39 -0.02 0.81 16 41 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 42 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 43 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 44 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 45 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -81.11 365.52 0.53 -80.58 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: 0.18 Total: 13.77 kcal Atomic # 6 Polarization: -50.14 SS G_CDS: 3.46 Total: -46.68 kcal Atomic # 7 Polarization: -82.47 SS G_CDS: -0.67 Total: -83.14 kcal Atomic # 8 Polarization: -101.97 SS G_CDS: -4.18 Total: -106.15 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Atomic # 16 Polarization: 95.85 SS G_CDS: -0.29 Total: 95.56 kcal Total: -81.11 0.53 -80.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183651949.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.128 kcal (2) G-P(sol) polarization free energy of solvation -81.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds