Wall clock time and date at job start Tue Mar 31 2020 11:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47103 * 2 1 4 4 H 1.09000 * 109.47380 * 55.00576 * 3 2 1 5 5 C 1.50710 * 109.47267 * 175.00116 * 3 2 1 6 6 H 1.07998 * 119.99789 * 120.00227 * 5 3 2 7 7 C 1.37880 * 119.99848 * 300.00436 * 5 3 2 8 8 N 1.31521 * 119.99878 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00061 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46929 * 59.99664 * 9 7 5 11 11 H 1.48498 * 109.47202 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.46983 * 299.99981 * 9 7 5 13 13 N 1.46494 * 109.47305 * 294.99928 * 3 2 1 14 14 C 1.34784 * 119.99635 * 85.00093 * 13 3 2 15 15 O 1.21279 * 119.99925 * 359.97438 * 14 13 3 16 16 C 1.50700 * 119.99961 * 180.02562 * 14 13 3 17 17 C 1.52992 * 109.47257 * 180.02562 * 16 14 13 18 18 S 1.81396 * 109.47323 * 179.97438 * 17 16 14 19 19 O 1.42104 * 108.58013 * 294.48890 * 18 17 16 20 20 O 1.42098 * 108.58181 * 65.51103 * 18 17 16 21 21 C 1.81399 * 101.92354 * 179.97438 * 18 17 16 22 22 C 1.54270 * 110.03054 * 302.90845 * 21 18 17 23 23 C 1.54966 * 104.15731 * 217.13747 * 22 21 18 24 24 C 1.54889 * 102.78113 * 37.88446 * 23 22 21 25 25 C 1.53875 * 110.03312 * 185.68922 * 21 18 17 26 26 H 1.09003 * 109.46445 * 299.99766 * 1 2 3 27 27 H 1.09000 * 109.47153 * 59.99728 * 1 2 3 28 28 H 1.08998 * 109.47000 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47180 * 240.00326 * 2 1 3 30 30 H 1.09000 * 109.47366 * 119.99762 * 2 1 3 31 31 H 0.97001 * 119.99446 * 179.97438 * 8 7 5 32 32 H 0.96995 * 120.00292 * 265.27526 * 13 3 2 33 33 H 1.09004 * 109.46932 * 300.00223 * 16 14 13 34 34 H 1.08997 * 109.47392 * 59.99562 * 16 14 13 35 35 H 1.09004 * 109.47330 * 299.99977 * 17 16 14 36 36 H 1.09005 * 109.47124 * 59.99773 * 17 16 14 37 37 H 1.09002 * 110.01869 * 64.29872 * 21 18 17 38 38 H 1.08997 * 110.48576 * 335.78251 * 22 21 18 39 39 H 1.08994 * 110.48319 * 98.43110 * 22 21 18 40 40 H 1.08997 * 110.71974 * 279.57337 * 23 22 21 41 41 H 1.08997 * 110.92199 * 156.29931 * 23 22 21 42 42 H 1.08994 * 110.49020 * 203.40360 * 24 23 22 43 43 H 1.09002 * 110.59545 * 80.81636 * 24 23 22 44 44 H 1.09001 * 110.03670 * 238.56971 * 25 21 18 45 45 H 1.09004 * 110.03341 * 359.95239 * 25 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9816 0.8419 5 6 3.5420 1.4444 0.1238 6 1 4.1472 1.8890 -0.6523 7 6 4.1434 0.8784 1.2279 8 7 3.4062 0.3373 2.1733 9 14 6.0050 0.8800 1.3811 10 1 6.5005 2.2799 1.3808 11 1 6.3979 0.2166 2.6503 12 1 6.5967 0.1453 0.2342 13 7 1.6525 2.0975 -1.2517 14 6 0.4351 2.6644 -1.3668 15 8 -0.3396 2.6319 -0.4343 16 6 0.0362 3.3378 -2.6547 17 6 -1.3825 3.8947 -2.5208 18 16 -1.8624 4.7058 -4.0707 19 8 -1.0300 5.8412 -4.2642 20 8 -1.9406 3.7208 -5.0920 21 6 -3.5414 5.2774 -3.6903 22 6 -4.4230 4.0839 -3.2681 23 6 -5.8101 4.4013 -3.8818 24 6 -5.4439 5.0334 -5.2476 25 6 -4.1903 5.8812 -4.9481 26 1 -0.3632 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8294 -0.0612 2.9498 32 1 2.2704 2.1197 -1.9991 33 1 0.7276 4.1530 -2.8678 34 1 0.0672 2.6132 -3.4683 35 1 -2.0742 3.0797 -2.3075 36 1 -1.4130 4.6195 -1.7072 37 1 -3.5112 6.0198 -2.8928 38 1 -4.0283 3.1543 -3.6781 39 1 -4.4901 4.0248 -2.1818 40 1 -6.3531 5.1130 -3.2600 41 1 -6.3917 3.4901 -4.0213 42 1 -6.2561 5.6664 -5.6050 43 1 -5.2147 4.2589 -5.9795 44 1 -4.4757 6.9164 -4.7608 45 1 -3.4960 5.8316 -5.7870 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183868586.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:48 Heat of formation + Delta-G solvation = -133.254511 kcal Electronic energy + Delta-G solvation = -25137.943159 eV Core-core repulsion = 21474.855947 eV Total energy + Delta-G solvation = -3663.087212 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.16215 -38.37740 -37.06819 -36.16681 -35.24988 -33.05640 -32.35425 -30.86490 -29.59663 -29.26038 -27.19516 -24.89015 -22.90406 -21.45799 -21.12168 -20.18099 -19.37652 -18.92068 -17.85995 -16.97096 -16.44166 -16.26423 -15.98699 -15.37572 -15.19172 -15.11934 -14.69497 -14.29332 -13.88533 -13.73270 -13.15405 -13.09069 -12.74836 -12.44428 -12.25906 -12.19360 -12.13527 -12.08725 -11.65387 -11.61885 -11.52894 -11.46531 -11.29205 -11.24421 -11.04585 -11.02121 -10.90906 -10.83638 -10.40586 -10.35106 -10.17917 -9.66629 -9.11557 -9.05581 -8.52229 -7.87682 -6.14716 -4.24259 -0.19632 2.54388 3.24461 3.29166 3.29972 3.31567 3.33667 3.67812 3.93608 4.10011 4.16341 4.36009 4.40850 4.49412 4.73827 4.77818 4.89364 4.92995 5.10237 5.16528 5.21592 5.25470 5.29525 5.45603 5.55041 5.58598 5.63601 5.64319 5.67215 5.79352 5.90023 6.35459 6.41529 6.61740 7.00342 7.15041 7.32347 7.40260 7.58738 7.69781 7.86815 8.15049 8.61443 8.74064 9.06889 9.43075 10.90576 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.028769 B = 0.002742 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.039145 B =10207.922337 C =10788.180675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.050 0.950 5 C -0.536 4.536 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.883 5.883 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.707 5.707 14 C 0.509 3.491 15 O -0.547 6.547 16 C -0.138 4.138 17 C -0.586 4.586 18 S 2.412 3.588 19 O -0.940 6.940 20 O -0.935 6.935 21 C -0.578 4.578 22 C -0.112 4.112 23 C -0.118 4.118 24 C -0.127 4.127 25 C -0.098 4.098 26 H 0.049 0.951 27 H 0.038 0.962 28 H 0.023 0.977 29 H 0.032 0.968 30 H 0.099 0.901 31 H 0.265 0.735 32 H 0.390 0.610 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.140 0.860 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.084 0.916 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.098 8.391 -12.618 22.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.355 5.355 14 C 0.292 3.708 15 O -0.426 6.426 16 C -0.179 4.179 17 C -0.716 4.716 18 S 2.596 3.404 19 O -0.938 6.938 20 O -0.932 6.932 21 C -0.687 4.687 22 C -0.150 4.150 23 C -0.156 4.156 24 C -0.164 4.164 25 C -0.137 4.137 26 H 0.068 0.932 27 H 0.057 0.943 28 H 0.042 0.958 29 H 0.050 0.950 30 H 0.118 0.882 31 H 0.075 0.925 32 H 0.222 0.778 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.158 0.842 36 H 0.158 0.842 37 H 0.158 0.842 38 H 0.101 0.899 39 H 0.107 0.893 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.094 0.906 44 H 0.102 0.898 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.117 8.373 -12.523 22.061 hybrid contribution 0.933 -0.028 0.579 1.099 sum -15.184 8.345 -11.944 21.044 Atomic orbital electron populations 1.21846 0.98417 0.98079 1.01159 1.21944 0.92587 0.99823 1.02379 1.18809 0.94263 0.89193 0.80922 0.93246 1.21206 0.90695 1.39158 1.06351 0.92069 1.24888 0.98665 0.94760 0.95356 1.69886 1.35257 1.37524 1.09346 0.86503 0.84775 0.78338 0.77458 1.20173 1.21136 1.20129 1.46504 1.14576 1.55740 1.18631 1.19945 0.82958 0.79467 0.88455 1.90657 1.51436 1.60105 1.40398 1.21415 0.94075 1.02423 0.99991 1.30037 1.06009 1.14172 1.21396 1.08381 0.77536 0.76304 0.78168 1.93585 1.64418 1.50761 1.84997 1.93578 1.86078 1.60275 1.53259 1.30834 1.21344 1.08584 1.07917 1.22304 0.95510 0.94861 1.02295 1.22452 0.96041 1.01032 0.96044 1.22414 0.96723 0.99336 0.97971 1.21844 0.97804 1.00579 0.93459 0.93164 0.94304 0.95810 0.94953 0.88242 0.92491 0.77751 0.87876 0.87908 0.84187 0.84237 0.84178 0.89896 0.89349 0.90994 0.90672 0.90889 0.90594 0.89759 0.91328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.51 37.16 0.32 -2.67 16 2 C -0.13 -3.07 5.45 -26.73 -0.15 -3.22 16 3 C 0.27 6.65 2.24 -69.08 -0.15 6.49 16 4 H 0.05 1.41 7.58 -51.93 -0.39 1.01 16 5 C -0.54 -13.95 8.73 -34.43 -0.30 -14.25 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.46 11.29 55.43 0.63 -23.84 16 9 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 13 N -0.71 -14.18 5.02 -54.93 -0.28 -14.45 16 14 C 0.51 9.47 6.40 -10.98 -0.07 9.40 16 15 O -0.55 -11.77 13.12 5.56 0.07 -11.70 16 16 C -0.14 -1.87 5.71 -27.89 -0.16 -2.03 16 17 C -0.59 -6.56 4.75 37.15 0.18 -6.38 16 18 S 2.41 25.59 3.88 -107.50 -0.42 25.17 16 19 O -0.94 -12.91 18.10 -57.83 -1.05 -13.96 16 20 O -0.93 -12.35 17.72 -57.83 -1.02 -13.38 16 21 C -0.58 -4.42 3.38 -25.61 -0.09 -4.51 16 22 C -0.11 -0.80 5.49 -25.03 -0.14 -0.93 16 23 C -0.12 -0.74 6.91 -24.70 -0.17 -0.92 16 24 C -0.13 -0.84 6.83 -25.07 -0.17 -1.02 16 25 C -0.10 -0.74 6.48 -25.61 -0.17 -0.91 16 26 H 0.05 1.16 7.85 -51.93 -0.41 0.75 16 27 H 0.04 0.80 5.64 -51.93 -0.29 0.51 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 31 H 0.27 7.00 8.31 -40.82 -0.34 6.67 16 32 H 0.39 6.77 8.54 -40.82 -0.35 6.42 16 33 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.14 1.43 7.58 -51.92 -0.39 1.04 16 36 H 0.14 1.43 8.10 -51.92 -0.42 1.01 16 37 H 0.14 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.08 0.61 7.49 -51.93 -0.39 0.22 16 39 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.07 0.55 7.60 -51.93 -0.39 0.15 16 LS Contribution 368.09 15.07 5.55 5.55 Total: -1.00 -34.08 368.09 -10.24 -44.32 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -7.54 Total: 6.12 kcal Atomic # 6 Polarization: -18.11 SS G_CDS: -1.16 Total: -19.28 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: 0.35 Total: -38.29 kcal Atomic # 8 Polarization: -37.04 SS G_CDS: -2.00 Total: -39.03 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 16 Polarization: 25.59 SS G_CDS: -0.42 Total: 25.17 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.08 -10.24 -44.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183868586.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.933 kcal (2) G-P(sol) polarization free energy of solvation -34.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds