Wall clock time and date at job start Tue Mar 31 2020 11:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47103 * 2 1 4 4 H 1.09000 * 109.47380 * 55.00576 * 3 2 1 5 5 C 1.50710 * 109.47267 * 175.00116 * 3 2 1 6 6 H 1.07998 * 119.99789 * 120.00227 * 5 3 2 7 7 C 1.37880 * 119.99848 * 300.00436 * 5 3 2 8 8 N 1.31521 * 119.99878 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00061 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46929 * 59.99664 * 9 7 5 11 11 H 1.48498 * 109.47202 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.46983 * 299.99981 * 9 7 5 13 13 N 1.46494 * 109.47305 * 294.99928 * 3 2 1 14 14 C 1.34784 * 119.99635 * 85.00093 * 13 3 2 15 15 O 1.21279 * 119.99925 * 359.97438 * 14 13 3 16 16 C 1.50700 * 119.99961 * 180.02562 * 14 13 3 17 17 C 1.52992 * 109.47257 * 180.02562 * 16 14 13 18 18 S 1.81396 * 109.47323 * 179.97438 * 17 16 14 19 19 O 1.42104 * 108.58013 * 294.48890 * 18 17 16 20 20 O 1.42098 * 108.58181 * 65.51103 * 18 17 16 21 21 C 1.81399 * 101.92354 * 179.97438 * 18 17 16 22 22 C 1.54270 * 110.03054 * 302.90845 * 21 18 17 23 23 C 1.54966 * 104.15731 * 217.13747 * 22 21 18 24 24 C 1.54889 * 102.78113 * 37.88446 * 23 22 21 25 25 C 1.53875 * 110.03312 * 185.68922 * 21 18 17 26 26 H 1.09003 * 109.46445 * 299.99766 * 1 2 3 27 27 H 1.09000 * 109.47153 * 59.99728 * 1 2 3 28 28 H 1.08998 * 109.47000 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47180 * 240.00326 * 2 1 3 30 30 H 1.09000 * 109.47366 * 119.99762 * 2 1 3 31 31 H 0.97001 * 119.99446 * 179.97438 * 8 7 5 32 32 H 0.96995 * 120.00292 * 265.27526 * 13 3 2 33 33 H 1.09004 * 109.46932 * 300.00223 * 16 14 13 34 34 H 1.08997 * 109.47392 * 59.99562 * 16 14 13 35 35 H 1.09004 * 109.47330 * 299.99977 * 17 16 14 36 36 H 1.09005 * 109.47124 * 59.99773 * 17 16 14 37 37 H 1.09002 * 110.01869 * 64.29872 * 21 18 17 38 38 H 1.08997 * 110.48576 * 335.78251 * 22 21 18 39 39 H 1.08994 * 110.48319 * 98.43110 * 22 21 18 40 40 H 1.08997 * 110.71974 * 279.57337 * 23 22 21 41 41 H 1.08997 * 110.92199 * 156.29931 * 23 22 21 42 42 H 1.08994 * 110.49020 * 203.40360 * 24 23 22 43 43 H 1.09002 * 110.59545 * 80.81636 * 24 23 22 44 44 H 1.09001 * 110.03670 * 238.56971 * 25 21 18 45 45 H 1.09004 * 110.03341 * 359.95239 * 25 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9816 0.8419 5 6 3.5420 1.4444 0.1238 6 1 4.1472 1.8890 -0.6523 7 6 4.1434 0.8784 1.2279 8 7 3.4062 0.3373 2.1733 9 14 6.0050 0.8800 1.3811 10 1 6.5005 2.2799 1.3808 11 1 6.3979 0.2166 2.6503 12 1 6.5967 0.1453 0.2342 13 7 1.6525 2.0975 -1.2517 14 6 0.4351 2.6644 -1.3668 15 8 -0.3396 2.6319 -0.4343 16 6 0.0362 3.3378 -2.6547 17 6 -1.3825 3.8947 -2.5208 18 16 -1.8624 4.7058 -4.0707 19 8 -1.0300 5.8412 -4.2642 20 8 -1.9406 3.7208 -5.0920 21 6 -3.5414 5.2774 -3.6903 22 6 -4.4230 4.0839 -3.2681 23 6 -5.8101 4.4013 -3.8818 24 6 -5.4439 5.0334 -5.2476 25 6 -4.1903 5.8812 -4.9481 26 1 -0.3632 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8294 -0.0612 2.9498 32 1 2.2704 2.1197 -1.9991 33 1 0.7276 4.1530 -2.8678 34 1 0.0672 2.6132 -3.4683 35 1 -2.0742 3.0797 -2.3075 36 1 -1.4130 4.6195 -1.7072 37 1 -3.5112 6.0198 -2.8928 38 1 -4.0283 3.1543 -3.6781 39 1 -4.4901 4.0248 -2.1818 40 1 -6.3531 5.1130 -3.2600 41 1 -6.3917 3.4901 -4.0213 42 1 -6.2561 5.6664 -5.6050 43 1 -5.2147 4.2589 -5.9795 44 1 -4.4757 6.9164 -4.7608 45 1 -3.4960 5.8316 -5.7870 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183868586.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:47 Heat of formation + Delta-G solvation = -157.353128 kcal Electronic energy + Delta-G solvation = -25138.988154 eV Core-core repulsion = 21474.855947 eV Total energy + Delta-G solvation = -3664.132207 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.73312 -38.93816 -37.99171 -37.12690 -37.02527 -34.36837 -34.11555 -32.61133 -30.18276 -29.81115 -29.03873 -26.19928 -24.70835 -22.23632 -21.88288 -21.50698 -21.05144 -19.76683 -19.08366 -18.27603 -17.52831 -17.35705 -17.08308 -16.84032 -16.45409 -16.27475 -16.00915 -15.37270 -15.07795 -14.69883 -14.58377 -14.38290 -13.75834 -13.72819 -13.52601 -13.43077 -13.17276 -13.16744 -13.07903 -12.90184 -12.78468 -12.66286 -12.42653 -12.18740 -12.15645 -12.08859 -12.04455 -11.97596 -11.80205 -11.57450 -11.50617 -11.13149 -11.05159 -10.66903 -10.49898 -9.62793 -8.16604 -6.33608 -1.02983 1.44676 1.45910 1.53654 1.74223 1.82248 2.32762 2.47321 2.78516 2.96744 3.12857 3.35285 3.45197 3.49951 3.86043 3.91050 4.02408 4.24603 4.36433 4.41773 4.43452 4.49671 4.51300 4.57915 4.59526 4.74197 4.77422 4.78518 4.89469 4.98207 5.07730 5.08728 5.18485 5.20510 5.27179 5.43083 5.44256 5.56505 5.62359 5.80264 5.92659 6.17522 6.74431 6.97837 7.33274 7.56661 8.88366 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.028769 B = 0.002742 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.039145 B =10207.922337 C =10788.180675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.123 4.123 3 C 0.277 3.723 4 H 0.002 0.998 5 C -0.551 4.551 6 H 0.070 0.930 7 C 0.016 3.984 8 N -0.914 5.914 9 Si 0.968 3.032 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.266 1.266 13 N -0.709 5.709 14 C 0.505 3.495 15 O -0.578 6.578 16 C -0.138 4.138 17 C -0.591 4.591 18 S 2.423 3.577 19 O -0.975 6.975 20 O -0.965 6.965 21 C -0.557 4.557 22 C -0.122 4.122 23 C -0.118 4.118 24 C -0.130 4.130 25 C -0.111 4.111 26 H 0.028 0.972 27 H 0.047 0.953 28 H 0.045 0.955 29 H 0.039 0.961 30 H 0.071 0.929 31 H 0.265 0.735 32 H 0.404 0.596 33 H 0.119 0.881 34 H 0.123 0.877 35 H 0.150 0.850 36 H 0.148 0.852 37 H 0.167 0.833 38 H 0.078 0.922 39 H 0.103 0.897 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.067 0.933 44 H 0.103 0.897 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.883 9.118 -13.717 23.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.162 4.162 3 C 0.174 3.826 4 H 0.020 0.980 5 C -0.589 4.589 6 H 0.088 0.912 7 C -0.184 4.184 8 N -0.552 5.552 9 Si 0.793 3.207 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.190 1.190 13 N -0.358 5.358 14 C 0.290 3.710 15 O -0.459 6.459 16 C -0.178 4.178 17 C -0.720 4.720 18 S 2.611 3.389 19 O -0.972 6.972 20 O -0.962 6.962 21 C -0.670 4.670 22 C -0.160 4.160 23 C -0.156 4.156 24 C -0.168 4.168 25 C -0.149 4.149 26 H 0.047 0.953 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.239 0.761 33 H 0.138 0.862 34 H 0.141 0.859 35 H 0.168 0.832 36 H 0.166 0.834 37 H 0.185 0.815 38 H 0.097 0.903 39 H 0.121 0.879 40 H 0.102 0.898 41 H 0.099 0.901 42 H 0.107 0.893 43 H 0.086 0.914 44 H 0.121 0.879 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -16.862 9.098 -13.668 23.535 hybrid contribution 1.074 -0.217 0.921 1.431 sum -15.788 8.881 -12.747 22.149 Atomic orbital electron populations 1.21695 0.96771 0.99248 1.00485 1.21798 0.94006 0.99140 1.01255 1.18382 0.93542 0.89259 0.81456 0.98042 1.21579 0.91632 1.38972 1.06686 0.91164 1.25743 1.03177 0.94404 0.95060 1.70037 1.37054 1.38311 1.09840 0.85459 0.79302 0.78414 0.77533 1.19740 1.21162 1.19044 1.46310 1.15778 1.56048 1.17638 1.20747 0.81836 0.78593 0.89788 1.90640 1.52151 1.61036 1.42072 1.21467 0.95958 1.03110 0.97307 1.30096 1.04732 1.14840 1.22293 1.07941 0.78549 0.75176 0.77274 1.93537 1.66715 1.51554 1.85419 1.93533 1.86998 1.61209 1.54490 1.30684 1.17711 1.09511 1.09076 1.22473 0.95869 0.94298 1.03381 1.22501 0.95600 1.01668 0.95800 1.22467 0.96814 0.99329 0.98174 1.22034 0.98013 1.01918 0.92957 0.95320 0.93390 0.93637 0.94176 0.91071 0.92596 0.76113 0.86244 0.85906 0.83234 0.83376 0.81485 0.90346 0.87887 0.89777 0.90064 0.89317 0.91442 0.87854 0.92263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.42 8.51 71.98 0.61 -4.81 16 2 C -0.12 -5.96 5.45 30.59 0.17 -5.80 16 3 C 0.28 13.94 2.24 44.25 0.10 14.04 16 4 H 0.00 0.10 7.58 -2.39 -0.02 0.08 16 5 C -0.55 -28.89 8.73 25.60 0.22 -28.66 16 6 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 7 C 0.02 0.88 5.29 84.65 0.45 1.32 16 8 N -0.91 -51.86 11.29 21.45 0.24 -51.62 16 9 Si 0.97 41.94 29.54 68.60 2.03 43.96 16 10 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 11 H -0.29 -12.31 7.11 99.48 0.71 -11.60 16 12 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 13 N -0.71 -28.35 5.02 -446.08 -2.24 -30.59 16 14 C 0.50 18.57 6.40 87.66 0.56 19.13 16 15 O -0.58 -25.02 13.12 -3.03 -0.04 -25.06 16 16 C -0.14 -3.56 5.71 29.85 0.17 -3.39 16 17 C -0.59 -12.33 4.75 71.98 0.34 -11.99 16 18 S 2.42 48.35 3.88 -56.49 -0.22 48.13 16 19 O -0.98 -25.90 18.10 -127.37 -2.31 -28.20 16 20 O -0.97 -24.78 17.72 -127.37 -2.26 -27.04 16 21 C -0.56 -7.21 3.38 31.32 0.11 -7.10 16 22 C -0.12 -1.44 5.49 31.70 0.17 -1.27 16 23 C -0.12 -1.17 6.91 31.91 0.22 -0.95 16 24 C -0.13 -1.45 6.83 31.67 0.22 -1.23 16 25 C -0.11 -1.42 6.48 31.32 0.20 -1.22 16 26 H 0.03 1.33 7.85 -2.39 -0.02 1.31 16 27 H 0.05 1.97 5.64 -2.39 -0.01 1.95 16 28 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.04 1.83 8.14 -2.39 -0.02 1.82 16 30 H 0.07 3.88 5.95 -2.39 -0.01 3.87 16 31 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 32 H 0.40 13.72 8.54 -92.71 -0.79 12.93 16 33 H 0.12 2.70 8.14 -2.38 -0.02 2.68 16 34 H 0.12 2.68 8.14 -2.39 -0.02 2.66 16 35 H 0.15 2.82 7.58 -2.39 -0.02 2.80 16 36 H 0.15 2.82 8.10 -2.39 -0.02 2.80 16 37 H 0.17 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.08 1.01 7.49 -2.39 -0.02 1.00 16 39 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.07 0.85 8.14 -2.39 -0.02 0.84 16 44 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.06 0.88 7.60 -2.38 -0.02 0.86 16 Total: -1.00 -74.59 368.09 -1.06 -75.66 By element: Atomic # 1 Polarization: 26.50 SS G_CDS: 0.18 Total: 26.68 kcal Atomic # 6 Polarization: -35.47 SS G_CDS: 3.54 Total: -31.93 kcal Atomic # 7 Polarization: -80.21 SS G_CDS: -2.00 Total: -82.21 kcal Atomic # 8 Polarization: -75.70 SS G_CDS: -4.60 Total: -80.30 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.96 kcal Atomic # 16 Polarization: 48.35 SS G_CDS: -0.22 Total: 48.13 kcal Total: -74.59 -1.06 -75.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183868586.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.698 kcal (2) G-P(sol) polarization free energy of solvation -74.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds