Wall clock time and date at job start Tue Mar 31 2020 12:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 109.47148 * 2 1 4 4 O 1.20766 * 119.99899 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00070 * 180.02562 * 3 2 1 6 6 H 1.08993 * 109.58625 * 10.54105 * 5 3 2 7 7 C 1.53194 * 109.58787 * 130.82781 * 5 3 2 8 8 C 1.53075 * 109.29239 * 174.27968 * 7 5 3 9 9 C 1.53036 * 109.65916 * 298.84356 * 8 7 5 10 10 C 1.53190 * 109.31452 * 61.30367 * 9 8 7 11 11 N 1.46928 * 108.77425 * 305.36395 * 10 9 8 12 12 S 1.65594 * 120.62930 * 233.62880 * 11 10 9 13 13 O 1.42106 * 104.27579 * 211.68318 * 12 11 10 14 14 O 1.42094 * 104.27784 * 339.53949 * 12 11 10 15 15 C 1.81405 * 104.44969 * 95.61336 * 12 11 10 16 16 C 1.53002 * 109.46815 * 179.97438 * 15 12 11 17 17 C 1.52999 * 109.46625 * 179.97438 * 16 15 12 18 18 C 1.50705 * 109.47091 * 180.02562 * 17 16 15 19 19 H 1.07993 * 119.99761 * 0.02562 * 18 17 16 20 20 C 1.37877 * 119.99919 * 179.97438 * 18 17 16 21 21 N 1.31510 * 120.00142 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99766 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47361 * 90.00315 * 22 20 18 24 24 H 1.48500 * 109.47311 * 210.00207 * 22 20 18 25 25 H 1.48502 * 109.47230 * 329.99925 * 22 20 18 26 26 H 1.09007 * 109.46865 * 299.99670 * 1 2 3 27 27 H 1.08991 * 109.47066 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47543 * 59.99342 * 1 2 3 29 29 H 1.08996 * 109.47384 * 119.99909 * 2 1 3 30 30 H 1.09002 * 109.47232 * 240.00585 * 2 1 3 31 31 H 1.08999 * 109.49055 * 294.37410 * 7 5 3 32 32 H 1.09003 * 109.49940 * 54.46734 * 7 5 3 33 33 H 1.08999 * 109.44480 * 178.75557 * 8 7 5 34 34 H 1.08995 * 109.33771 * 58.86308 * 8 7 5 35 35 H 1.09006 * 109.49625 * 301.34889 * 9 8 7 36 36 H 1.09005 * 109.52071 * 181.27325 * 9 8 7 37 37 H 1.08995 * 109.58555 * 185.58002 * 10 9 8 38 38 H 1.09003 * 109.70357 * 65.21977 * 10 9 8 39 39 H 1.08993 * 109.46734 * 299.99908 * 15 12 11 40 40 H 1.09000 * 109.46921 * 59.99629 * 15 12 11 41 41 H 1.08993 * 109.47623 * 299.99644 * 16 15 12 42 42 H 1.08993 * 109.47189 * 60.00507 * 16 15 12 43 43 H 1.09004 * 109.47530 * 300.00252 * 17 16 15 44 44 H 1.09004 * 109.47412 * 60.00277 * 17 16 15 45 45 H 0.97010 * 120.00170 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2475 2.3387 0.0005 5 6 3.5140 1.6962 -0.0006 6 1 4.0576 0.7705 -0.1888 7 6 3.8460 2.7179 -1.0927 8 6 5.3251 3.1000 -0.9949 9 6 5.6031 3.7378 0.3681 10 6 5.2915 2.7250 1.4744 11 7 3.9133 2.2457 1.3023 12 16 2.8305 2.3240 2.5527 13 8 1.9799 1.2037 2.3503 14 8 3.6430 2.4265 3.7139 15 6 1.9246 3.8702 2.2710 16 6 0.8810 4.0580 3.3741 17 6 0.1174 5.3624 3.1368 18 6 -0.9100 5.5479 4.2236 19 1 -1.0082 4.8095 5.0055 20 6 -1.7239 6.6608 4.2201 21 7 -1.6040 7.5602 3.2682 22 14 -2.9979 6.8902 5.5669 23 1 -2.3944 7.6418 6.6964 24 1 -4.1553 7.6497 5.0293 25 1 -3.4571 5.5616 6.0455 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 -0.8899 29 1 1.8934 -0.5138 0.8899 30 1 1.8933 -0.5137 -0.8900 31 1 3.6442 2.2827 -2.0714 32 1 3.2324 3.6085 -0.9565 33 1 5.5693 3.8103 -1.7848 34 1 5.9372 2.2054 -1.1089 35 1 4.9730 4.6184 0.4931 36 1 6.6518 4.0295 0.4267 37 1 5.3926 3.2046 2.4479 38 1 5.9818 1.8840 1.4078 39 1 2.6222 4.7074 2.2839 40 1 1.4258 3.8277 1.3028 41 1 0.1834 3.2207 3.3608 42 1 1.3795 4.1003 4.3424 43 1 0.8153 6.1997 3.1503 44 1 -0.3811 5.3206 2.1683 45 1 -2.1769 8.3430 3.2656 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185953363.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:24 Heat of formation + Delta-G solvation = -124.393727 kcal Electronic energy + Delta-G solvation = -26529.582167 eV Core-core repulsion = 22866.879187 eV Total energy + Delta-G solvation = -3662.702980 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.42225 -38.06461 -36.85719 -35.85190 -34.58912 -32.91131 -32.63601 -32.10732 -31.60191 -27.73862 -26.21461 -24.44317 -23.61298 -23.14930 -20.97579 -20.18533 -20.01702 -18.69216 -17.71311 -16.74159 -16.50187 -16.11632 -15.65361 -15.27089 -15.17178 -14.84919 -14.49755 -14.40885 -14.22075 -13.96252 -13.74183 -13.28532 -12.86573 -12.52563 -12.25065 -12.15608 -12.11818 -11.97079 -11.83756 -11.71191 -11.60788 -11.54430 -11.41592 -11.18977 -11.14985 -10.94903 -10.87782 -10.75709 -10.73181 -10.36473 -9.88330 -9.54564 -9.48128 -9.19995 -8.93360 -8.35492 -6.00254 -4.03117 0.38470 1.72423 2.69213 3.33428 3.39207 3.43560 3.62871 3.92353 4.19167 4.39033 4.46776 4.56791 4.72693 4.76579 4.95672 4.99376 5.01964 5.19852 5.24362 5.31975 5.34486 5.36410 5.37757 5.44127 5.48412 5.63536 5.74208 5.80367 5.82783 5.90493 5.92907 6.02950 6.09894 6.17419 6.29651 6.39741 6.43902 6.56471 6.95033 7.41124 7.64375 7.75866 7.98246 8.38838 9.02989 9.60964 11.11020 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015608 B = 0.004055 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.529277 B = 6903.056580 C = 7424.998447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.153 4.153 3 C 0.349 3.651 4 O -0.438 6.438 5 C 0.111 3.889 6 H 0.098 0.902 7 C -0.129 4.129 8 C -0.113 4.113 9 C -0.140 4.140 10 C 0.120 3.880 11 N -0.993 5.993 12 S 2.583 3.417 13 O -0.954 6.954 14 O -0.959 6.959 15 C -0.608 4.608 16 C -0.100 4.100 17 C 0.033 3.967 18 C -0.524 4.524 19 H 0.057 0.943 20 C 0.058 3.942 21 N -0.895 5.895 22 Si 0.894 3.106 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.273 1.273 26 H 0.070 0.930 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.113 0.887 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.096 0.904 38 H 0.073 0.927 39 H 0.123 0.877 40 H 0.150 0.850 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.019 0.981 44 H 0.022 0.978 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.751 -13.811 -11.515 23.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.191 4.191 3 C 0.223 3.777 4 O -0.311 6.311 5 C 0.004 3.996 6 H 0.115 0.885 7 C -0.168 4.168 8 C -0.151 4.151 9 C -0.179 4.179 10 C -0.004 4.004 11 N -0.831 5.831 12 S 2.683 3.317 13 O -0.944 6.944 14 O -0.950 6.950 15 C -0.741 4.741 16 C -0.140 4.140 17 C -0.006 4.006 18 C -0.563 4.563 19 H 0.075 0.925 20 C -0.143 4.143 21 N -0.534 5.534 22 Si 0.721 3.279 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.198 1.198 26 H 0.089 0.911 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.131 0.869 30 H 0.104 0.896 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.115 0.885 38 H 0.091 0.909 39 H 0.141 0.859 40 H 0.167 0.833 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.037 0.963 44 H 0.041 0.959 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 15.207 -13.849 -10.882 23.269 hybrid contribution -0.627 0.791 0.259 1.042 sum 14.580 -13.058 -10.623 22.269 Atomic orbital electron populations 1.21558 0.93542 1.01487 1.03340 1.21895 0.98736 0.94432 1.04025 1.24839 0.89612 0.92802 0.70453 1.90408 1.58496 1.47249 1.34926 1.21526 0.94833 0.98436 0.84812 0.88457 1.21922 0.97906 0.99628 0.97362 1.21436 0.95433 1.00871 0.97332 1.21972 1.02202 0.98848 0.94854 1.21469 0.81350 0.97632 0.99975 1.57921 1.23232 1.76988 1.24934 1.05901 0.74279 0.78305 0.73202 1.93538 1.68038 1.48769 1.84030 1.93547 1.67041 1.88051 1.46321 1.30727 1.12570 1.18953 1.11846 1.21448 0.95279 1.03594 0.93688 1.19039 0.94400 0.89587 0.97538 1.21254 1.18157 1.06508 1.10368 0.92464 1.25013 0.97444 0.95901 0.95992 1.69967 1.39597 1.11050 1.32792 0.86567 0.81079 0.78275 0.81954 1.20598 1.21171 1.19760 0.91083 0.92494 0.92694 0.86865 0.89628 0.90503 0.90009 0.91291 0.91675 0.90986 0.90465 0.88529 0.90918 0.85859 0.83257 0.91781 0.92079 0.96259 0.95942 0.92952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.20 37.16 0.34 -1.39 16 2 C -0.15 -1.67 5.62 -27.88 -0.16 -1.83 16 3 C 0.35 4.41 3.39 -29.03 -0.10 4.31 16 4 O -0.44 -6.93 12.59 -10.62 -0.13 -7.07 16 5 C 0.11 1.13 3.23 -68.75 -0.22 0.90 16 6 H 0.10 0.72 8.02 -51.93 -0.42 0.31 16 7 C -0.13 -1.13 5.27 -26.59 -0.14 -1.27 16 8 C -0.11 -0.80 5.88 -26.67 -0.16 -0.96 16 9 C -0.14 -1.11 6.08 -26.61 -0.16 -1.27 16 10 C 0.12 1.16 6.35 -3.71 -0.02 1.13 16 11 N -0.99 -11.78 3.22 -107.70 -0.35 -12.13 16 12 S 2.58 41.12 4.81 -107.50 -0.52 40.60 16 13 O -0.95 -16.17 13.06 -64.64 -0.84 -17.01 16 14 O -0.96 -17.43 16.54 -57.54 -0.95 -18.38 16 15 C -0.61 -10.82 5.92 37.16 0.22 -10.60 16 16 C -0.10 -2.21 5.16 -26.73 -0.14 -2.35 16 17 C 0.03 0.88 4.97 -27.88 -0.14 0.74 16 18 C -0.52 -15.31 9.11 -34.44 -0.31 -15.62 16 19 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 20 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 21 N -0.89 -27.32 13.29 55.43 0.74 -26.58 16 22 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 25 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 26 H 0.07 1.06 8.10 -51.92 -0.42 0.64 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.66 8.10 -51.93 -0.42 0.24 16 29 H 0.11 1.28 7.01 -51.93 -0.36 0.92 16 30 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.87 7.80 -51.93 -0.40 0.47 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.10 1.00 6.93 -51.93 -0.36 0.64 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.12 1.98 8.14 -51.93 -0.42 1.56 16 40 H 0.15 2.71 5.28 -51.92 -0.27 2.43 16 41 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 42 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 363.15 15.07 5.47 5.47 Total: -1.00 -34.82 363.15 -10.39 -45.21 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -7.70 Total: -0.57 kcal Atomic # 6 Polarization: -25.53 SS G_CDS: -1.09 Total: -26.62 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: 0.39 Total: -38.71 kcal Atomic # 8 Polarization: -40.53 SS G_CDS: -1.93 Total: -42.46 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Atomic # 16 Polarization: 41.12 SS G_CDS: -0.52 Total: 40.60 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.82 -10.39 -45.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185953363.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.188 kcal (2) G-P(sol) polarization free energy of solvation -34.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds