Wall clock time and date at job start Tue Mar 31 2020 12:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 109.47148 * 2 1 4 4 O 1.20766 * 119.99899 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00070 * 180.02562 * 3 2 1 6 6 H 1.08993 * 109.58625 * 10.54105 * 5 3 2 7 7 C 1.53194 * 109.58787 * 130.82781 * 5 3 2 8 8 C 1.53075 * 109.29239 * 174.27968 * 7 5 3 9 9 C 1.53036 * 109.65916 * 298.84356 * 8 7 5 10 10 C 1.53190 * 109.31452 * 61.30367 * 9 8 7 11 11 N 1.46928 * 108.77425 * 305.36395 * 10 9 8 12 12 S 1.65594 * 120.62930 * 233.62880 * 11 10 9 13 13 O 1.42106 * 104.27579 * 211.68318 * 12 11 10 14 14 O 1.42094 * 104.27784 * 339.53949 * 12 11 10 15 15 C 1.81405 * 104.44969 * 95.61336 * 12 11 10 16 16 C 1.53002 * 109.46815 * 179.97438 * 15 12 11 17 17 C 1.52999 * 109.46625 * 179.97438 * 16 15 12 18 18 C 1.50705 * 109.47091 * 180.02562 * 17 16 15 19 19 H 1.07993 * 119.99761 * 0.02562 * 18 17 16 20 20 C 1.37877 * 119.99919 * 179.97438 * 18 17 16 21 21 N 1.31510 * 120.00142 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99766 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47361 * 90.00315 * 22 20 18 24 24 H 1.48500 * 109.47311 * 210.00207 * 22 20 18 25 25 H 1.48502 * 109.47230 * 329.99925 * 22 20 18 26 26 H 1.09007 * 109.46865 * 299.99670 * 1 2 3 27 27 H 1.08991 * 109.47066 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47543 * 59.99342 * 1 2 3 29 29 H 1.08996 * 109.47384 * 119.99909 * 2 1 3 30 30 H 1.09002 * 109.47232 * 240.00585 * 2 1 3 31 31 H 1.08999 * 109.49055 * 294.37410 * 7 5 3 32 32 H 1.09003 * 109.49940 * 54.46734 * 7 5 3 33 33 H 1.08999 * 109.44480 * 178.75557 * 8 7 5 34 34 H 1.08995 * 109.33771 * 58.86308 * 8 7 5 35 35 H 1.09006 * 109.49625 * 301.34889 * 9 8 7 36 36 H 1.09005 * 109.52071 * 181.27325 * 9 8 7 37 37 H 1.08995 * 109.58555 * 185.58002 * 10 9 8 38 38 H 1.09003 * 109.70357 * 65.21977 * 10 9 8 39 39 H 1.08993 * 109.46734 * 299.99908 * 15 12 11 40 40 H 1.09000 * 109.46921 * 59.99629 * 15 12 11 41 41 H 1.08993 * 109.47623 * 299.99644 * 16 15 12 42 42 H 1.08993 * 109.47189 * 60.00507 * 16 15 12 43 43 H 1.09004 * 109.47530 * 300.00252 * 17 16 15 44 44 H 1.09004 * 109.47412 * 60.00277 * 17 16 15 45 45 H 0.97010 * 120.00170 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2475 2.3387 0.0005 5 6 3.5140 1.6962 -0.0006 6 1 4.0576 0.7705 -0.1888 7 6 3.8460 2.7179 -1.0927 8 6 5.3251 3.1000 -0.9949 9 6 5.6031 3.7378 0.3681 10 6 5.2915 2.7250 1.4744 11 7 3.9133 2.2457 1.3023 12 16 2.8305 2.3240 2.5527 13 8 1.9799 1.2037 2.3503 14 8 3.6430 2.4265 3.7139 15 6 1.9246 3.8702 2.2710 16 6 0.8810 4.0580 3.3741 17 6 0.1174 5.3624 3.1368 18 6 -0.9100 5.5479 4.2236 19 1 -1.0082 4.8095 5.0055 20 6 -1.7239 6.6608 4.2201 21 7 -1.6040 7.5602 3.2682 22 14 -2.9979 6.8902 5.5669 23 1 -2.3944 7.6418 6.6964 24 1 -4.1553 7.6497 5.0293 25 1 -3.4571 5.5616 6.0455 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 -0.8899 29 1 1.8934 -0.5138 0.8899 30 1 1.8933 -0.5137 -0.8900 31 1 3.6442 2.2827 -2.0714 32 1 3.2324 3.6085 -0.9565 33 1 5.5693 3.8103 -1.7848 34 1 5.9372 2.2054 -1.1089 35 1 4.9730 4.6184 0.4931 36 1 6.6518 4.0295 0.4267 37 1 5.3926 3.2046 2.4479 38 1 5.9818 1.8840 1.4078 39 1 2.6222 4.7074 2.2839 40 1 1.4258 3.8277 1.3028 41 1 0.1834 3.2207 3.3608 42 1 1.3795 4.1003 4.3424 43 1 0.8153 6.1997 3.1503 44 1 -0.3811 5.3206 2.1683 45 1 -2.1769 8.3430 3.2656 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185953363.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:23 Heat of formation + Delta-G solvation = -147.041597 kcal Electronic energy + Delta-G solvation = -26530.564252 eV Core-core repulsion = 22866.879187 eV Total energy + Delta-G solvation = -3663.685065 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.37879 -38.96583 -38.14499 -37.21405 -36.53767 -34.23984 -33.77695 -33.45886 -32.36487 -29.72324 -27.10097 -25.72832 -25.11794 -23.96095 -22.56656 -21.42640 -20.82793 -19.85099 -18.87144 -18.60813 -17.77498 -17.26192 -16.98227 -16.53853 -16.43976 -16.14954 -15.84260 -15.49633 -15.24309 -14.88391 -14.60349 -14.48345 -14.21712 -14.09575 -13.88091 -13.45880 -13.30856 -13.15577 -13.10355 -13.05146 -13.01366 -12.77653 -12.66026 -12.60222 -12.35861 -12.23378 -12.06352 -11.88529 -11.79013 -11.74240 -11.46936 -11.42693 -11.10849 -10.62626 -10.47138 -10.03547 -8.26375 -6.39100 -0.90486 0.75125 1.36350 1.38616 1.50022 1.58281 2.36482 2.60674 2.75014 2.97792 3.06392 3.56994 3.72368 3.80519 3.88070 4.06209 4.10874 4.16520 4.27281 4.31649 4.33942 4.40528 4.43026 4.55045 4.69675 4.72916 4.87590 4.88522 4.94712 4.97659 4.98028 5.04347 5.17630 5.21218 5.24466 5.28836 5.37069 5.42148 5.48824 5.52016 5.54398 5.72836 6.13265 6.46702 6.75601 7.30401 8.85672 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015608 B = 0.004055 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.529277 B = 6903.056580 C = 7424.998447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.156 4.156 3 C 0.340 3.660 4 O -0.480 6.480 5 C 0.108 3.892 6 H 0.141 0.859 7 C -0.130 4.130 8 C -0.108 4.108 9 C -0.141 4.141 10 C 0.111 3.889 11 N -0.984 5.984 12 S 2.611 3.389 13 O -0.964 6.964 14 O -0.979 6.979 15 C -0.621 4.621 16 C -0.097 4.097 17 C 0.036 3.964 18 C -0.554 4.554 19 H 0.061 0.939 20 C 0.002 3.998 21 N -0.931 5.931 22 Si 0.968 3.032 23 H -0.268 1.268 24 H -0.278 1.278 25 H -0.264 1.264 26 H 0.031 0.969 27 H 0.079 0.921 28 H 0.050 0.950 29 H 0.113 0.887 30 H 0.132 0.868 31 H 0.098 0.902 32 H 0.052 0.948 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.052 0.948 36 H 0.101 0.899 37 H 0.085 0.915 38 H 0.104 0.896 39 H 0.132 0.868 40 H 0.143 0.857 41 H 0.059 0.941 42 H 0.065 0.935 43 H 0.000 1.000 44 H -0.006 1.006 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.615 -15.674 -12.140 26.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.193 4.193 3 C 0.217 3.783 4 O -0.356 6.356 5 C 0.002 3.998 6 H 0.159 0.841 7 C -0.169 4.169 8 C -0.146 4.146 9 C -0.180 4.180 10 C -0.013 4.013 11 N -0.825 5.825 12 S 2.708 3.292 13 O -0.954 6.954 14 O -0.970 6.970 15 C -0.751 4.751 16 C -0.136 4.136 17 C -0.002 4.002 18 C -0.592 4.592 19 H 0.079 0.921 20 C -0.196 4.196 21 N -0.571 5.571 22 Si 0.792 3.208 23 H -0.193 1.193 24 H -0.203 1.203 25 H -0.188 1.188 26 H 0.051 0.949 27 H 0.098 0.902 28 H 0.070 0.930 29 H 0.131 0.869 30 H 0.150 0.850 31 H 0.117 0.883 32 H 0.071 0.929 33 H 0.096 0.904 34 H 0.108 0.892 35 H 0.070 0.930 36 H 0.119 0.881 37 H 0.103 0.897 38 H 0.122 0.878 39 H 0.151 0.849 40 H 0.161 0.839 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.018 0.982 44 H 0.012 0.988 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 17.068 -15.698 -11.502 25.885 hybrid contribution -1.150 1.343 0.350 1.803 sum 15.917 -14.355 -11.152 24.162 Atomic orbital electron populations 1.21565 0.95121 1.02267 1.01254 1.22016 0.97464 0.93767 1.06071 1.25517 0.90808 0.93167 0.68838 1.90410 1.59839 1.48515 1.36817 1.21859 0.93448 1.00577 0.83925 0.84140 1.21971 0.98830 0.98258 0.97878 1.21451 0.94237 1.02100 0.96792 1.22012 1.03252 0.97744 0.94961 1.21803 0.80105 0.99220 1.00135 1.57646 1.23203 1.76796 1.24853 1.04854 0.74002 0.76784 0.73526 1.93526 1.68986 1.48316 1.84538 1.93518 1.67367 1.87936 1.48157 1.30794 1.12203 1.22291 1.09797 1.21217 0.96060 1.00763 0.95578 1.18899 0.94088 0.91559 0.95697 1.21699 1.19234 1.07126 1.11148 0.92080 1.26011 0.99678 0.95341 0.98616 1.70096 1.40675 1.11618 1.34696 0.85400 0.78057 0.78655 0.78688 1.19332 1.20312 1.18811 0.94945 0.90233 0.93037 0.86879 0.85044 0.88332 0.92901 0.90370 0.89155 0.92954 0.88073 0.89712 0.87764 0.84938 0.83932 0.92206 0.91656 0.98179 0.98797 0.92532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.52 9.20 71.98 0.66 -2.85 16 2 C -0.16 -3.09 5.62 29.85 0.17 -2.93 16 3 C 0.34 8.26 3.39 29.10 0.10 8.35 16 4 O -0.48 -15.76 12.59 14.42 0.18 -15.58 16 5 C 0.11 1.90 3.23 44.23 0.14 2.05 16 6 H 0.14 1.36 8.02 -2.39 -0.02 1.34 16 7 C -0.13 -1.98 5.27 30.68 0.16 -1.82 16 8 C -0.11 -1.15 5.88 30.63 0.18 -0.97 16 9 C -0.14 -1.89 6.08 30.67 0.19 -1.70 16 10 C 0.11 1.85 6.35 86.36 0.55 2.40 16 11 N -0.98 -21.67 3.22 -494.64 -1.59 -23.26 16 12 S 2.61 83.19 4.81 -56.49 -0.27 82.92 16 13 O -0.96 -32.67 13.06 -120.87 -1.58 -34.25 16 14 O -0.98 -35.32 16.54 -127.65 -2.11 -37.43 16 15 C -0.62 -23.35 5.92 71.98 0.43 -22.92 16 16 C -0.10 -4.51 5.16 30.59 0.16 -4.35 16 17 C 0.04 2.04 4.97 29.85 0.15 2.19 16 18 C -0.55 -33.53 9.11 25.60 0.23 -33.29 16 19 H 0.06 3.54 7.74 -2.91 -0.02 3.52 16 20 C 0.00 0.10 5.46 84.66 0.46 0.56 16 21 N -0.93 -58.51 13.29 21.45 0.28 -58.23 16 22 Si 0.97 45.87 29.54 68.60 2.03 47.89 16 23 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 24 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 25 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 26 H 0.03 1.01 8.10 -2.38 -0.02 0.99 16 27 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.05 1.25 8.10 -2.39 -0.02 1.23 16 29 H 0.11 2.32 7.01 -2.39 -0.02 2.30 16 30 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.05 1.12 7.80 -2.39 -0.02 1.10 16 33 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 36 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 37 H 0.08 1.64 6.93 -2.39 -0.02 1.63 16 38 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.13 4.55 8.14 -2.39 -0.02 4.53 16 40 H 0.14 5.59 5.28 -2.39 -0.01 5.57 16 41 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 42 H 0.06 2.91 8.14 -2.39 -0.02 2.89 16 43 H 0.00 -0.01 8.14 -2.38 -0.02 -0.03 16 44 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 45 H 0.27 15.55 8.31 -92.70 -0.77 14.78 16 Total: -1.00 -79.18 363.15 1.47 -77.71 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 0.95 Total: 15.52 kcal Atomic # 6 Polarization: -58.87 SS G_CDS: 3.58 Total: -55.30 kcal Atomic # 7 Polarization: -80.18 SS G_CDS: -1.31 Total: -81.49 kcal Atomic # 8 Polarization: -83.75 SS G_CDS: -3.51 Total: -87.26 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.89 kcal Atomic # 16 Polarization: 83.19 SS G_CDS: -0.27 Total: 82.92 kcal Total: -79.18 1.47 -77.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185953363.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.328 kcal (2) G-P(sol) polarization free energy of solvation -79.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds