Wall clock time and date at job start Tue Mar 31 2020 11:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47481 * 2 1 4 4 H 1.09002 * 109.47122 * 305.56375 * 3 2 1 5 5 C 1.50699 * 109.46985 * 185.55919 * 3 2 1 6 6 H 1.08004 * 119.99896 * 245.45343 * 5 3 2 7 7 C 1.37880 * 120.00108 * 65.46040 * 5 3 2 8 8 N 1.31515 * 119.99882 * 9.49486 * 7 5 3 9 9 Si 1.86795 * 119.99885 * 189.50409 * 7 5 3 10 10 H 1.48500 * 109.47462 * 84.99043 * 9 7 5 11 11 H 1.48504 * 109.47087 * 204.98800 * 9 7 5 12 12 H 1.48503 * 109.47244 * 324.98922 * 9 7 5 13 13 O 1.45198 * 109.46948 * 65.56155 * 3 2 1 14 14 C 1.34889 * 116.99757 * 270.00067 * 13 3 2 15 15 O 1.21639 * 120.00349 * 359.97438 * 14 13 3 16 16 C 1.46397 * 119.99964 * 180.02562 * 14 13 3 17 17 C 1.40728 * 126.55430 * 270.02549 * 16 14 13 18 18 C 1.50702 * 125.63913 * 0.02562 * 17 16 14 19 19 N 1.30655 * 108.71961 * 180.02562 * 17 16 14 20 20 N 1.39911 * 109.54794 * 359.97438 * 19 17 16 21 21 C 1.36563 * 108.12710 * 0.02562 * 20 19 17 22 22 N 1.33352 * 120.81407 * 180.02562 * 21 20 19 23 23 C 1.31514 * 120.85307 * 0.02562 * 22 21 20 24 24 C 1.50702 * 119.94874 * 180.02562 * 23 22 21 25 25 C 1.39949 * 120.10049 * 359.97438 * 23 22 21 26 26 C 1.35771 * 119.34679 * 0.20826 * 25 23 22 27 27 C 1.50705 * 120.41748 * 179.71500 * 26 25 23 28 28 H 1.09004 * 109.46699 * 299.99723 * 1 2 3 29 29 H 1.08999 * 109.47048 * 59.99631 * 1 2 3 30 30 H 1.08996 * 109.47563 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46699 * 240.00277 * 2 1 3 32 32 H 1.08999 * 109.47048 * 120.00369 * 2 1 3 33 33 H 0.97002 * 119.99880 * 180.02562 * 8 7 5 34 34 H 1.09000 * 109.47757 * 270.00698 * 18 17 16 35 35 H 1.08999 * 109.47223 * 30.00516 * 18 17 16 36 36 H 1.09004 * 109.47142 * 150.00327 * 18 17 16 37 37 H 1.08998 * 109.47211 * 90.00105 * 24 23 22 38 38 H 1.08997 * 109.47130 * 209.99824 * 24 23 22 39 39 H 1.08997 * 109.47405 * 329.99927 * 24 23 22 40 40 H 1.07992 * 120.32537 * 180.02562 * 25 23 22 41 41 H 1.08997 * 109.46650 * 269.88013 * 27 26 25 42 42 H 1.08997 * 109.47374 * 29.88316 * 27 26 25 43 43 H 1.08999 * 109.46650 * 149.88387 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5977 1.9843 -0.8360 5 6 3.5408 1.4445 -0.1376 6 1 4.1569 1.8062 0.6724 7 6 4.1274 0.9849 -1.2977 8 7 3.3844 0.7210 -2.3503 9 14 5.9772 0.7368 -1.3741 10 1 6.3193 -0.6051 -0.8379 11 1 6.4322 0.8370 -2.7842 12 1 6.6507 1.7812 -0.5612 13 8 1.6675 2.0875 1.2463 14 6 0.4787 2.7244 1.2747 15 8 -0.2267 2.7401 0.2838 16 6 0.0380 3.3976 2.4976 17 6 -0.7161 2.8302 3.5416 18 6 -1.2138 1.4087 3.5931 19 7 -0.9134 3.7397 4.4587 20 7 -0.3050 4.9376 4.0685 21 6 0.2875 4.7375 2.8545 22 7 0.9456 5.7241 2.2447 23 6 1.0408 6.9137 2.7971 24 6 1.7890 8.0141 2.0897 25 6 0.4475 7.1597 4.0405 26 6 -0.2208 6.1585 4.6686 27 6 -0.8634 6.3949 6.0111 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 3.7970 0.3973 -3.1664 34 1 -2.2011 1.3524 3.1347 35 1 -0.5240 0.7623 3.0505 36 1 -1.2762 1.0830 4.6315 37 1 1.1019 8.5671 1.4492 38 1 2.2229 8.6903 2.8263 39 1 2.5833 7.5809 1.4819 40 1 0.5231 8.1353 4.4973 41 1 -0.1497 6.1623 6.8014 42 1 -1.1658 7.4391 6.0904 43 1 -1.7394 5.7542 6.1125 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188075435.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:12 Heat of formation + Delta-G solvation = 14.111332 kcal Electronic energy + Delta-G solvation = -26878.988086 eV Core-core repulsion = 23119.139935 eV Total energy + Delta-G solvation = -3759.848150 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.51018 -39.32065 -38.41521 -35.61038 -35.16158 -33.29965 -32.99385 -31.41796 -30.93767 -28.96877 -28.55088 -27.56783 -27.11862 -24.00193 -22.89926 -22.15558 -21.50409 -20.17043 -19.18595 -18.28503 -17.16606 -16.91726 -16.58307 -16.19431 -15.48528 -15.08827 -14.70972 -14.44852 -14.09320 -14.00575 -13.84670 -13.39140 -13.16294 -13.03344 -12.95170 -12.89502 -12.67133 -12.41016 -12.32328 -12.08537 -11.71142 -11.47961 -11.30612 -11.10987 -11.08296 -10.89502 -10.76419 -10.57496 -10.18773 -9.87610 -9.75704 -9.55052 -9.38753 -9.28526 -8.71547 -8.37412 -7.86738 -6.11344 -4.14026 0.35339 0.71888 1.83583 2.37174 2.99317 3.21698 3.30783 3.35836 3.39840 3.61307 3.73452 3.94661 4.17798 4.45799 4.58527 4.73821 4.87416 4.98112 5.00476 5.01618 5.21282 5.34064 5.34629 5.43717 5.45040 5.54424 5.59979 5.75651 5.79779 5.99139 6.05142 6.24859 6.26921 6.34054 6.45573 6.54213 6.91733 7.05375 7.22869 7.28569 7.34782 7.60833 7.66731 7.79207 7.97543 8.24381 8.77916 9.04126 9.49340 10.97780 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014311 B = 0.004148 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.134513 B = 6748.925416 C = 8026.098321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.128 4.128 3 C 0.218 3.782 4 H 0.054 0.946 5 C -0.521 4.521 6 H 0.067 0.933 7 C 0.066 3.934 8 N -0.885 5.885 9 Si 0.906 3.094 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.272 1.272 13 O -0.347 6.347 14 C 0.548 3.452 15 O -0.506 6.506 16 C -0.250 4.250 17 C 0.163 3.837 18 C -0.082 4.082 19 N -0.315 5.315 20 N -0.308 5.308 21 C 0.311 3.689 22 N -0.461 5.461 23 C 0.212 3.788 24 C -0.108 4.108 25 C -0.231 4.231 26 C 0.198 3.802 27 C -0.117 4.117 28 H 0.036 0.964 29 H 0.055 0.945 30 H 0.034 0.966 31 H 0.089 0.911 32 H 0.045 0.955 33 H 0.265 0.735 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.167 0.833 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.955 12.628 15.995 21.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.166 4.166 3 C 0.165 3.835 4 H 0.072 0.928 5 C -0.559 4.559 6 H 0.085 0.915 7 C -0.137 4.137 8 N -0.523 5.523 9 Si 0.733 3.267 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.197 1.197 13 O -0.263 6.263 14 C 0.390 3.610 15 O -0.395 6.395 16 C -0.265 4.265 17 C 0.003 3.997 18 C -0.141 4.141 19 N -0.140 5.140 20 N -0.078 5.078 21 C 0.081 3.919 22 N -0.174 5.174 23 C 0.049 3.951 24 C -0.165 4.165 25 C -0.255 4.255 26 C 0.082 3.918 27 C -0.174 4.174 28 H 0.055 0.945 29 H 0.074 0.926 30 H 0.053 0.947 31 H 0.107 0.893 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.103 0.897 37 H 0.109 0.891 38 H 0.104 0.896 39 H 0.109 0.891 40 H 0.185 0.815 41 H 0.112 0.888 42 H 0.113 0.887 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.364 12.300 15.789 21.692 hybrid contribution 0.969 -0.095 -0.276 1.012 sum -7.395 12.205 15.513 21.078 Atomic orbital electron populations 1.21902 0.98073 0.99079 1.01224 1.21922 0.93018 0.99427 1.02210 1.20681 0.95286 0.88562 0.78954 0.92812 1.20989 0.89680 1.43584 1.01607 0.91457 1.24872 0.98886 0.95293 0.94649 1.69997 1.35769 1.44332 1.02168 0.86389 0.84339 0.78843 0.77171 1.20289 1.21092 1.19732 1.86661 1.33626 1.62402 1.43599 1.19348 0.80567 0.75715 0.85385 1.90809 1.55225 1.58252 1.35188 1.18625 1.15663 0.91238 1.00928 1.22352 0.92307 0.96417 0.88661 1.20455 1.02494 0.86932 1.04214 1.77379 1.24451 0.88821 1.23326 1.46733 1.36449 1.09281 1.15312 1.20149 0.93370 0.94519 0.83846 1.68020 1.17302 0.99473 1.32631 1.21987 0.90561 0.91940 0.90585 1.20848 1.00459 0.94352 1.00885 1.21494 1.05179 1.00631 0.98226 1.20759 0.94319 0.81131 0.95632 1.20986 1.01862 1.04274 0.90254 0.94541 0.92595 0.94685 0.89264 0.93656 0.92492 0.89168 0.89076 0.89686 0.89077 0.89624 0.89110 0.81510 0.88791 0.88730 0.89221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 8.57 37.16 0.32 -2.89 16 2 C -0.13 -3.21 5.54 -26.73 -0.15 -3.36 16 3 C 0.22 6.09 2.11 -27.89 -0.06 6.03 16 4 H 0.05 1.68 7.11 -51.93 -0.37 1.31 16 5 C -0.52 -15.23 8.82 -34.44 -0.30 -15.53 16 6 H 0.07 1.97 7.83 -52.48 -0.41 1.56 16 7 C 0.07 1.86 5.15 -17.82 -0.09 1.77 16 8 N -0.89 -25.88 12.16 55.43 0.67 -25.21 16 9 Si 0.91 21.64 29.55 -169.99 -5.02 16.62 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 12 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 13 O -0.35 -9.13 9.82 -41.01 -0.40 -9.53 16 14 C 0.55 13.28 5.90 34.01 0.20 13.48 16 15 O -0.51 -13.20 14.31 -19.37 -0.28 -13.48 16 16 C -0.25 -5.21 6.04 -104.67 -0.63 -5.84 16 17 C 0.16 2.81 7.22 -82.15 -0.59 2.22 16 18 C -0.08 -1.11 10.26 36.01 0.37 -0.74 16 19 N -0.32 -5.10 12.39 33.81 0.42 -4.68 16 20 N -0.31 -4.87 3.86 -8.25 -0.03 -4.90 16 21 C 0.31 5.96 7.90 -155.86 -1.23 4.73 16 22 N -0.46 -8.35 10.39 -8.24 -0.09 -8.44 16 23 C 0.21 2.64 6.83 -82.09 -0.56 2.08 16 24 C -0.11 -0.91 10.19 36.01 0.37 -0.54 16 25 C -0.23 -2.15 9.38 -39.82 -0.37 -2.53 16 26 C 0.20 2.20 6.85 -81.49 -0.56 1.64 16 27 C -0.12 -0.77 10.08 36.01 0.36 -0.41 16 28 H 0.04 0.77 5.22 -51.93 -0.27 0.50 16 29 H 0.05 1.31 7.82 -51.93 -0.41 0.91 16 30 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.09 2.40 6.79 -51.93 -0.35 2.04 16 32 H 0.04 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 34 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.09 1.32 7.14 -51.93 -0.37 0.95 16 36 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.09 0.43 8.09 -51.93 -0.42 0.01 16 39 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.17 0.75 8.06 -52.49 -0.42 0.32 16 41 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.09 0.33 8.09 -51.93 -0.42 -0.09 16 43 H 0.09 0.68 8.10 -51.93 -0.42 0.26 16 LS Contribution 364.18 15.07 5.49 5.49 Total: -1.00 -36.74 364.18 -8.13 -44.87 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -5.96 Total: -0.83 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: -2.93 Total: 0.10 kcal Atomic # 7 Polarization: -44.21 SS G_CDS: 0.98 Total: -43.23 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -0.68 Total: -23.01 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -36.74 -8.13 -44.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188075435.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.980 kcal (2) G-P(sol) polarization free energy of solvation -36.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds