Wall clock time and date at job start Tue Mar 31 2020 11:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47481 * 2 1 4 4 H 1.09002 * 109.47122 * 305.56375 * 3 2 1 5 5 C 1.50699 * 109.46985 * 185.55919 * 3 2 1 6 6 H 1.08004 * 119.99896 * 245.45343 * 5 3 2 7 7 C 1.37880 * 120.00108 * 65.46040 * 5 3 2 8 8 N 1.31515 * 119.99882 * 9.49486 * 7 5 3 9 9 Si 1.86795 * 119.99885 * 189.50409 * 7 5 3 10 10 H 1.48500 * 109.47462 * 84.99043 * 9 7 5 11 11 H 1.48504 * 109.47087 * 204.98800 * 9 7 5 12 12 H 1.48503 * 109.47244 * 324.98922 * 9 7 5 13 13 O 1.45198 * 109.46948 * 65.56155 * 3 2 1 14 14 C 1.34889 * 116.99757 * 270.00067 * 13 3 2 15 15 O 1.21639 * 120.00349 * 359.97438 * 14 13 3 16 16 C 1.46397 * 119.99964 * 180.02562 * 14 13 3 17 17 C 1.40728 * 126.55430 * 270.02549 * 16 14 13 18 18 C 1.50702 * 125.63913 * 0.02562 * 17 16 14 19 19 N 1.30655 * 108.71961 * 180.02562 * 17 16 14 20 20 N 1.39911 * 109.54794 * 359.97438 * 19 17 16 21 21 C 1.36563 * 108.12710 * 0.02562 * 20 19 17 22 22 N 1.33352 * 120.81407 * 180.02562 * 21 20 19 23 23 C 1.31514 * 120.85307 * 0.02562 * 22 21 20 24 24 C 1.50702 * 119.94874 * 180.02562 * 23 22 21 25 25 C 1.39949 * 120.10049 * 359.97438 * 23 22 21 26 26 C 1.35771 * 119.34679 * 0.20826 * 25 23 22 27 27 C 1.50705 * 120.41748 * 179.71500 * 26 25 23 28 28 H 1.09004 * 109.46699 * 299.99723 * 1 2 3 29 29 H 1.08999 * 109.47048 * 59.99631 * 1 2 3 30 30 H 1.08996 * 109.47563 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46699 * 240.00277 * 2 1 3 32 32 H 1.08999 * 109.47048 * 120.00369 * 2 1 3 33 33 H 0.97002 * 119.99880 * 180.02562 * 8 7 5 34 34 H 1.09000 * 109.47757 * 270.00698 * 18 17 16 35 35 H 1.08999 * 109.47223 * 30.00516 * 18 17 16 36 36 H 1.09004 * 109.47142 * 150.00327 * 18 17 16 37 37 H 1.08998 * 109.47211 * 90.00105 * 24 23 22 38 38 H 1.08997 * 109.47130 * 209.99824 * 24 23 22 39 39 H 1.08997 * 109.47405 * 329.99927 * 24 23 22 40 40 H 1.07992 * 120.32537 * 180.02562 * 25 23 22 41 41 H 1.08997 * 109.46650 * 269.88013 * 27 26 25 42 42 H 1.08997 * 109.47374 * 29.88316 * 27 26 25 43 43 H 1.08999 * 109.46650 * 149.88387 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5977 1.9843 -0.8360 5 6 3.5408 1.4445 -0.1376 6 1 4.1569 1.8062 0.6724 7 6 4.1274 0.9849 -1.2977 8 7 3.3844 0.7210 -2.3503 9 14 5.9772 0.7368 -1.3741 10 1 6.3193 -0.6051 -0.8379 11 1 6.4322 0.8370 -2.7842 12 1 6.6507 1.7812 -0.5612 13 8 1.6675 2.0875 1.2463 14 6 0.4787 2.7244 1.2747 15 8 -0.2267 2.7401 0.2838 16 6 0.0380 3.3976 2.4976 17 6 -0.7161 2.8302 3.5416 18 6 -1.2138 1.4087 3.5931 19 7 -0.9134 3.7397 4.4587 20 7 -0.3050 4.9376 4.0685 21 6 0.2875 4.7375 2.8545 22 7 0.9456 5.7241 2.2447 23 6 1.0408 6.9137 2.7971 24 6 1.7890 8.0141 2.0897 25 6 0.4475 7.1597 4.0405 26 6 -0.2208 6.1585 4.6686 27 6 -0.8634 6.3949 6.0111 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 3.7970 0.3973 -3.1664 34 1 -2.2011 1.3524 3.1347 35 1 -0.5240 0.7623 3.0505 36 1 -1.2762 1.0830 4.6315 37 1 1.1019 8.5671 1.4492 38 1 2.2229 8.6903 2.8263 39 1 2.5833 7.5809 1.4819 40 1 0.5231 8.1353 4.4973 41 1 -0.1497 6.1623 6.8014 42 1 -1.1658 7.4391 6.0904 43 1 -1.7394 5.7542 6.1125 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188075435.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:11 Heat of formation + Delta-G solvation = -9.533572 kcal Electronic energy + Delta-G solvation = -26880.013406 eV Core-core repulsion = 23119.139935 eV Total energy + Delta-G solvation = -3760.873470 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.66680 -41.16974 -39.61699 -37.54183 -36.25942 -35.42335 -34.03201 -33.47129 -32.00045 -30.23257 -29.41637 -29.21175 -28.38161 -25.72026 -24.70280 -23.08716 -22.91247 -21.96059 -20.88774 -19.45852 -18.79528 -18.51019 -18.28767 -17.48490 -17.31974 -16.73026 -16.37415 -15.83880 -15.13482 -15.05121 -14.84058 -14.74847 -14.51932 -14.29609 -14.07722 -13.93781 -13.85683 -13.65017 -13.46892 -13.32377 -13.23761 -13.10730 -13.07320 -12.81739 -12.69861 -12.54746 -12.49410 -12.16227 -11.83053 -11.72217 -11.52730 -11.35213 -10.95766 -10.82993 -10.56585 -10.44733 -9.14907 -8.30459 -6.44381 -0.65396 -0.34580 0.75541 1.09674 1.18479 1.38937 1.42327 1.52648 2.06185 2.22675 2.43298 2.58349 2.85748 2.99611 3.17800 3.62440 3.80537 3.96261 4.05448 4.18450 4.33725 4.35693 4.36035 4.37831 4.54085 4.57346 4.59246 4.62564 4.66249 4.71060 4.80099 4.83420 4.85450 5.05003 5.08140 5.16293 5.22961 5.25958 5.32834 5.44433 5.50675 5.60560 5.85528 6.08598 6.14030 6.52949 6.59002 6.98117 7.25959 8.79239 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014311 B = 0.004148 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.134513 B = 6748.925416 C = 8026.098321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.119 4.119 3 C 0.222 3.778 4 H 0.006 0.994 5 C -0.554 4.554 6 H 0.058 0.942 7 C 0.022 3.978 8 N -0.914 5.914 9 Si 0.979 3.021 10 H -0.263 1.263 11 H -0.274 1.274 12 H -0.269 1.269 13 O -0.360 6.360 14 C 0.557 3.443 15 O -0.538 6.538 16 C -0.319 4.319 17 C 0.166 3.834 18 C -0.082 4.082 19 N -0.315 5.315 20 N -0.310 5.310 21 C 0.305 3.695 22 N -0.532 5.532 23 C 0.213 3.787 24 C -0.109 4.109 25 C -0.209 4.209 26 C 0.184 3.816 27 C -0.112 4.112 28 H 0.041 0.959 29 H 0.032 0.968 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.272 0.728 34 H 0.105 0.895 35 H 0.075 0.925 36 H 0.115 0.885 37 H 0.109 0.891 38 H 0.133 0.867 39 H 0.067 0.933 40 H 0.231 0.769 41 H 0.110 0.890 42 H 0.138 0.862 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.638 14.851 18.922 25.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.157 4.157 3 C 0.168 3.832 4 H 0.024 0.976 5 C -0.592 4.592 6 H 0.077 0.923 7 C -0.179 4.179 8 N -0.551 5.551 9 Si 0.802 3.198 10 H -0.187 1.187 11 H -0.199 1.199 12 H -0.193 1.193 13 O -0.276 6.276 14 C 0.400 3.600 15 O -0.429 6.429 16 C -0.334 4.334 17 C 0.005 3.995 18 C -0.140 4.140 19 N -0.139 5.139 20 N -0.079 5.079 21 C 0.073 3.927 22 N -0.248 5.248 23 C 0.055 3.945 24 C -0.165 4.165 25 C -0.232 4.232 26 C 0.068 3.932 27 C -0.168 4.168 28 H 0.060 0.940 29 H 0.051 0.949 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.123 0.877 35 H 0.094 0.906 36 H 0.133 0.867 37 H 0.127 0.873 38 H 0.151 0.849 39 H 0.086 0.914 40 H 0.247 0.753 41 H 0.128 0.872 42 H 0.156 0.844 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.062 14.574 18.758 25.085 hybrid contribution 0.867 -0.466 -1.123 1.494 sum -7.195 14.107 17.635 23.702 Atomic orbital electron populations 1.21766 0.95807 1.01116 1.00382 1.21752 0.95023 0.97337 1.01589 1.20456 0.94847 0.89562 0.78298 0.97589 1.21238 0.90385 1.45292 1.02254 0.92338 1.25813 1.04244 0.94112 0.93684 1.70116 1.38109 1.44144 1.02717 0.85263 0.77570 0.79306 0.77668 1.18732 1.19943 1.19330 1.86656 1.35333 1.63052 1.42558 1.19895 0.79150 0.74538 0.86375 1.90757 1.55783 1.59379 1.36959 1.18531 1.20279 0.92999 1.01573 1.22747 0.91357 0.97818 0.87556 1.20581 1.02518 0.84819 1.06060 1.77282 1.24857 0.88955 1.22802 1.47010 1.35782 1.10497 1.14594 1.20148 0.93297 0.94274 0.84992 1.68074 1.20192 1.01568 1.34938 1.22947 0.89027 0.90858 0.91691 1.21085 0.99836 0.93629 1.01980 1.22201 1.02217 1.02496 0.96260 1.21941 0.94275 0.79573 0.97375 1.21204 1.01294 1.06708 0.87590 0.94008 0.94875 0.90989 0.91215 0.92580 0.91936 0.87711 0.90638 0.86667 0.87311 0.84914 0.91418 0.75286 0.87184 0.84421 0.90347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.14 8.57 71.98 0.62 -5.52 16 2 C -0.12 -6.28 5.54 30.59 0.17 -6.11 16 3 C 0.22 13.27 2.11 29.85 0.06 13.34 16 4 H 0.01 0.42 7.11 -2.39 -0.02 0.41 16 5 C -0.55 -34.09 8.82 25.60 0.23 -33.86 16 6 H 0.06 3.59 7.83 -2.91 -0.02 3.57 16 7 C 0.02 1.27 5.15 84.66 0.44 1.71 16 8 N -0.91 -55.30 12.16 21.45 0.26 -55.04 16 9 Si 0.98 45.02 29.55 68.60 2.03 47.05 16 10 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 11 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 12 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 13 O -0.36 -20.39 9.82 -58.04 -0.57 -20.96 16 14 C 0.56 29.15 5.90 69.95 0.41 29.56 16 15 O -0.54 -30.54 14.31 19.38 0.28 -30.26 16 16 C -0.32 -14.16 6.04 -19.90 -0.12 -14.28 16 17 C 0.17 5.93 7.22 43.34 0.31 6.25 16 18 C -0.08 -2.23 10.26 71.24 0.73 -1.50 16 19 N -0.31 -10.15 12.39 -46.93 -0.58 -10.73 16 20 N -0.31 -9.65 3.86 -180.02 -0.69 -10.35 16 21 C 0.31 12.19 7.90 134.02 1.06 13.25 16 22 N -0.53 -19.95 10.39 -179.98 -1.87 -21.82 16 23 C 0.21 4.94 6.83 43.02 0.29 5.24 16 24 C -0.11 -1.55 10.19 71.24 0.73 -0.82 16 25 C -0.21 -3.01 9.38 22.11 0.21 -2.80 16 26 C 0.18 3.53 6.85 41.29 0.28 3.81 16 27 C -0.11 -0.98 10.08 71.24 0.72 -0.26 16 28 H 0.04 1.85 5.22 -2.38 -0.01 1.84 16 29 H 0.03 1.63 7.82 -2.39 -0.02 1.62 16 30 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 31 H 0.07 3.92 6.79 -2.38 -0.02 3.90 16 32 H 0.06 2.78 8.14 -2.39 -0.02 2.76 16 33 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 34 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 35 H 0.07 2.29 7.14 -2.39 -0.02 2.27 16 36 H 0.11 2.37 8.14 -2.38 -0.02 2.35 16 37 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.13 0.65 8.09 -2.39 -0.02 0.63 16 39 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.23 0.30 8.06 -2.91 -0.02 0.28 16 41 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.14 0.07 8.09 -2.39 -0.02 0.05 16 43 H 0.08 0.95 8.10 -2.39 -0.02 0.93 16 Total: -1.00 -90.13 364.18 6.01 -84.12 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: 1.03 Total: 10.00 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: 6.13 Total: 8.00 kcal Atomic # 7 Polarization: -95.06 SS G_CDS: -2.89 Total: -97.94 kcal Atomic # 8 Polarization: -50.93 SS G_CDS: -0.29 Total: -51.22 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -90.13 6.01 -84.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188075435.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.582 kcal (2) G-P(sol) polarization free energy of solvation -90.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds