Wall clock time and date at job start Tue Mar 31 2020 11:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47012 * 2 1 4 4 N 1.46497 * 109.46780 * 120.00350 * 2 1 3 5 5 C 1.34258 * 125.75002 * 274.99482 * 4 2 1 6 6 C 1.38049 * 107.41663 * 180.02562 * 5 4 2 7 7 C 1.47422 * 126.41914 * 179.97438 * 6 5 4 8 8 O 1.21610 * 120.00054 * 325.32320 * 7 6 5 9 9 N 1.34770 * 120.00360 * 145.31359 * 7 6 5 10 10 C 1.46505 * 119.99926 * 4.10375 * 9 7 6 11 11 C 1.50706 * 109.47166 * 94.75258 * 10 9 7 12 12 H 1.08002 * 119.99367 * 0.02562 * 11 10 9 13 13 C 1.37868 * 119.99756 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00604 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 119.99600 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46898 * 60.00482 * 15 13 11 17 17 H 1.48503 * 109.46969 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47510 * 299.99952 * 15 13 11 19 19 C 1.46499 * 120.00650 * 184.09775 * 9 7 6 20 20 C 1.50702 * 109.46960 * 89.99961 * 19 9 7 21 21 C 1.34520 * 125.78739 * 89.71658 * 20 19 9 22 22 C 1.41381 * 106.84263 * 179.88916 * 21 20 19 23 23 C 1.34517 * 106.83994 * 0.37871 * 22 21 20 24 24 O 1.34301 * 125.79421 * 270.02930 * 20 19 9 25 25 C 1.41289 * 107.16830 * 0.02562 * 6 5 4 26 26 N 1.30446 * 108.02399 * 359.97438 * 25 6 5 27 27 H 1.08992 * 109.47229 * 299.99949 * 1 2 3 28 28 H 1.09001 * 109.46859 * 59.99878 * 1 2 3 29 29 H 1.08996 * 109.47217 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46909 * 240.00104 * 2 1 3 31 31 H 1.09003 * 109.46991 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47408 * 299.99786 * 3 2 1 33 33 H 1.09000 * 109.47199 * 60.00281 * 3 2 1 34 34 H 1.08004 * 126.29673 * 359.74392 * 5 4 2 35 35 H 1.08995 * 109.47207 * 214.75658 * 10 9 7 36 36 H 1.08997 * 109.46890 * 334.75212 * 10 9 7 37 37 H 0.96997 * 120.00340 * 179.97438 * 14 13 11 38 38 H 1.08990 * 109.47836 * 210.00326 * 19 9 7 39 39 H 1.09004 * 109.47094 * 330.00811 * 19 9 7 40 40 H 1.08001 * 126.57594 * 0.03782 * 21 20 19 41 41 H 1.08002 * 126.58198 * 180.16719 * 22 21 20 42 42 H 1.07996 * 125.78954 * 179.75175 * 23 22 21 43 43 H 1.08002 * 125.98755 * 180.02562 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1903 -0.1363 2.4067 6 6 2.6632 -1.1223 3.2493 7 6 2.9953 -0.9681 4.6773 8 8 3.4702 0.0758 5.0819 9 7 2.7725 -1.9839 5.5346 10 6 2.2848 -3.2714 5.0338 11 6 3.4530 -4.1942 4.7991 12 1 4.4581 -3.8555 5.0032 13 6 3.2386 -5.4706 4.3241 14 7 2.0148 -5.8828 4.0753 15 14 4.6867 -6.6142 4.0327 16 1 5.4162 -6.8242 5.3090 17 1 4.1924 -7.9189 3.5240 18 1 5.6024 -6.0084 3.0328 19 6 3.0179 -1.8007 6.9672 20 6 1.7623 -1.2978 7.6317 21 6 0.7904 -2.0638 8.1590 22 6 -0.1894 -1.1848 8.6750 23 6 0.2383 0.0657 8.4247 24 8 1.4210 -0.0089 7.7926 25 6 2.7705 -2.3067 2.4864 26 7 2.3850 -2.0391 1.2693 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 3.1301 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.9986 0.8931 2.6716 35 1 1.6125 -3.7157 5.7677 36 1 1.7494 -3.1176 4.0969 37 1 1.8640 -6.7806 3.7407 38 1 3.3073 -2.7532 7.4110 39 1 3.8193 -1.0755 7.1087 40 1 0.7648 -3.1432 8.1855 41 1 -1.1070 -1.4639 9.1716 42 1 -0.2813 0.9754 8.6872 43 1 3.1112 -3.2657 2.8479 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190714930.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:52 Heat of formation + Delta-G solvation = 61.925884 kcal Electronic energy + Delta-G solvation = -26921.818717 eV Core-core repulsion = 23164.043962 eV Total energy + Delta-G solvation = -3757.774756 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.13452 -40.88630 -38.56425 -35.61048 -35.11201 -32.86989 -32.47843 -30.75174 -29.91330 -29.19197 -27.46448 -27.34718 -25.61263 -23.33079 -22.73187 -21.35053 -21.15059 -20.23546 -19.60540 -18.70557 -17.12314 -16.90629 -16.31103 -15.89191 -15.54372 -15.14982 -15.00259 -14.55190 -14.43827 -14.25955 -13.87379 -13.64109 -12.87529 -12.76007 -12.57768 -12.45273 -12.42992 -12.38909 -12.28737 -12.13887 -12.05856 -11.49775 -11.27846 -11.25504 -11.09497 -10.93229 -10.63462 -10.38660 -10.15887 -9.82769 -9.53944 -9.12079 -8.93528 -8.59083 -8.13383 -8.04969 -7.75662 -6.21539 -4.31055 2.06816 2.13325 2.76060 2.95677 2.99903 3.25294 3.30786 3.33575 3.40988 4.01076 4.15335 4.35242 4.49657 4.77152 4.94141 5.08058 5.09331 5.12282 5.30159 5.34554 5.39272 5.45973 5.50630 5.52258 5.64280 5.75384 5.93055 5.95868 6.02305 6.12287 6.15543 6.18822 6.32596 6.46643 6.50001 6.74105 6.88135 7.25206 7.32270 7.36884 7.52166 7.58264 7.73274 8.02591 8.23736 8.34325 8.78036 9.06705 9.36833 10.83347 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.007607 B = 0.006275 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3679.767453 B = 4460.810966 C = 7181.486535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.155 3.845 3 C -0.166 4.166 4 N -0.369 5.369 5 C 0.103 3.897 6 C -0.278 4.278 7 C 0.597 3.403 8 O -0.572 6.572 9 N -0.588 5.588 10 C 0.229 3.771 11 C -0.546 4.546 12 H 0.065 0.935 13 C 0.069 3.931 14 N -0.881 5.881 15 Si 0.894 3.106 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.273 1.273 19 C 0.197 3.803 20 C -0.013 4.013 21 C -0.203 4.203 22 C -0.216 4.216 23 C -0.055 4.055 24 O -0.168 6.168 25 C 0.100 3.900 26 N -0.314 5.314 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.102 0.898 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.173 0.827 35 H 0.035 0.965 36 H 0.052 0.948 37 H 0.268 0.732 38 H 0.113 0.887 39 H 0.090 0.910 40 H 0.149 0.851 41 H 0.143 0.857 42 H 0.195 0.805 43 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.461 10.943 -1.672 11.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.053 3.947 3 C -0.224 4.224 4 N -0.149 5.149 5 C -0.047 4.047 6 C -0.293 4.293 7 C 0.386 3.614 8 O -0.454 6.454 9 N -0.317 5.317 10 C 0.109 3.891 11 C -0.584 4.584 12 H 0.084 0.916 13 C -0.136 4.136 14 N -0.518 5.518 15 Si 0.721 3.279 16 H -0.200 1.200 17 H -0.211 1.211 18 H -0.198 1.198 19 C 0.073 3.927 20 C -0.065 4.065 21 C -0.223 4.223 22 C -0.235 4.235 23 C -0.123 4.123 24 O -0.063 6.063 25 C -0.086 4.086 26 N -0.133 5.133 27 H 0.081 0.919 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.120 0.880 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.190 0.810 35 H 0.053 0.947 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.131 0.869 39 H 0.109 0.891 40 H 0.167 0.833 41 H 0.160 0.840 42 H 0.212 0.788 43 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -4.392 11.127 -2.965 12.325 hybrid contribution 0.359 -0.628 0.793 1.073 sum -4.033 10.500 -2.172 11.455 Atomic orbital electron populations 1.22241 0.93830 1.03488 1.02738 1.21202 0.94722 0.92584 0.86225 1.22214 1.02465 0.94252 1.03440 1.48690 1.50144 1.08225 1.07829 1.22572 0.98321 0.98706 0.85134 1.20223 1.18751 0.94702 0.95616 1.17354 0.76870 0.82654 0.84527 1.90674 1.46487 1.28891 1.79304 1.48034 1.64674 1.14445 1.04586 1.19751 0.95129 0.77774 0.96410 1.21494 0.93797 0.97696 1.45457 0.91635 1.24966 0.95936 0.97727 0.94940 1.69923 1.19646 1.18986 1.43255 0.86602 0.82480 0.79884 0.78901 1.20007 1.21122 1.19832 1.19676 0.90171 1.01616 0.81206 1.23298 1.00184 0.80500 1.02497 1.21675 0.94942 1.00875 1.04786 1.21785 1.01955 0.92831 1.06965 1.23933 0.87163 0.99713 1.01513 1.84099 1.33384 1.28786 1.60042 1.25534 0.93949 1.00428 0.88736 1.77244 1.22623 0.91793 1.21670 0.91949 0.90770 0.91387 0.88020 0.91393 0.90207 0.91493 0.81005 0.94732 0.93051 0.92232 0.86886 0.89135 0.83340 0.83955 0.78800 0.75909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 9.52 37.16 0.35 -1.34 16 2 C 0.15 1.81 3.91 -67.93 -0.27 1.54 16 3 C -0.17 -1.48 8.82 37.16 0.33 -1.16 16 4 N -0.37 -6.12 3.50 -54.31 -0.19 -6.31 16 5 C 0.10 1.80 10.54 -16.56 -0.17 1.63 16 6 C -0.28 -5.82 5.46 -105.07 -0.57 -6.40 16 7 C 0.60 13.30 7.59 -12.52 -0.10 13.20 16 8 O -0.57 -13.55 16.61 5.27 0.09 -13.47 16 9 N -0.59 -12.67 2.44 -177.71 -0.43 -13.11 16 10 C 0.23 5.36 4.69 -5.19 -0.02 5.34 16 11 C -0.55 -13.45 7.28 -34.44 -0.25 -13.70 16 12 H 0.07 1.63 7.81 -52.49 -0.41 1.22 16 13 C 0.07 1.74 5.27 -17.82 -0.09 1.65 16 14 N -0.88 -23.36 13.29 55.43 0.74 -22.63 16 15 Si 0.89 19.89 29.54 -169.99 -5.02 14.87 16 16 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 17 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 18 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 19 C 0.20 3.75 5.99 -5.19 -0.03 3.72 16 20 C -0.01 -0.24 6.90 -35.62 -0.25 -0.49 16 21 C -0.20 -3.46 10.81 -39.70 -0.43 -3.89 16 22 C -0.22 -3.20 10.91 -39.70 -0.43 -3.64 16 23 C -0.05 -0.80 12.09 29.42 0.36 -0.44 16 24 O -0.17 -3.07 10.65 5.70 0.06 -3.00 16 25 C 0.10 2.18 9.55 -16.98 -0.16 2.02 16 26 N -0.31 -6.41 12.50 30.86 0.39 -6.02 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.59 7.13 -51.93 -0.37 0.22 16 34 H 0.17 2.53 7.23 -52.48 -0.38 2.15 16 35 H 0.03 0.85 8.11 -51.93 -0.42 0.43 16 36 H 0.05 1.28 4.93 -51.93 -0.26 1.03 16 37 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 38 H 0.11 1.99 8.07 -51.93 -0.42 1.57 16 39 H 0.09 1.71 7.37 -51.93 -0.38 1.33 16 40 H 0.15 2.44 8.06 -52.49 -0.42 2.02 16 41 H 0.14 1.71 8.06 -52.49 -0.42 1.29 16 42 H 0.20 1.97 8.06 -52.49 -0.42 1.55 16 43 H 0.23 5.35 4.60 -52.49 -0.24 5.11 16 LS Contribution 365.75 15.07 5.51 5.51 Total: -1.00 -30.80 365.75 -6.42 -37.22 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -5.82 Total: 8.88 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: -1.74 Total: -1.95 kcal Atomic # 7 Polarization: -48.57 SS G_CDS: 0.50 Total: -48.07 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: 0.15 Total: -16.47 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.80 -6.42 -37.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190714930.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.150 kcal (2) G-P(sol) polarization free energy of solvation -30.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds