Wall clock time and date at job start Tue Mar 31 2020 11:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47012 * 2 1 4 4 N 1.46497 * 109.46780 * 120.00350 * 2 1 3 5 5 C 1.34258 * 125.75002 * 274.99482 * 4 2 1 6 6 C 1.38049 * 107.41663 * 180.02562 * 5 4 2 7 7 C 1.47422 * 126.41914 * 179.97438 * 6 5 4 8 8 O 1.21610 * 120.00054 * 325.32320 * 7 6 5 9 9 N 1.34770 * 120.00360 * 145.31359 * 7 6 5 10 10 C 1.46505 * 119.99926 * 4.10375 * 9 7 6 11 11 C 1.50706 * 109.47166 * 94.75258 * 10 9 7 12 12 H 1.08002 * 119.99367 * 0.02562 * 11 10 9 13 13 C 1.37868 * 119.99756 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00604 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 119.99600 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46898 * 60.00482 * 15 13 11 17 17 H 1.48503 * 109.46969 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47510 * 299.99952 * 15 13 11 19 19 C 1.46499 * 120.00650 * 184.09775 * 9 7 6 20 20 C 1.50702 * 109.46960 * 89.99961 * 19 9 7 21 21 C 1.34520 * 125.78739 * 89.71658 * 20 19 9 22 22 C 1.41381 * 106.84263 * 179.88916 * 21 20 19 23 23 C 1.34517 * 106.83994 * 0.37871 * 22 21 20 24 24 O 1.34301 * 125.79421 * 270.02930 * 20 19 9 25 25 C 1.41289 * 107.16830 * 0.02562 * 6 5 4 26 26 N 1.30446 * 108.02399 * 359.97438 * 25 6 5 27 27 H 1.08992 * 109.47229 * 299.99949 * 1 2 3 28 28 H 1.09001 * 109.46859 * 59.99878 * 1 2 3 29 29 H 1.08996 * 109.47217 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46909 * 240.00104 * 2 1 3 31 31 H 1.09003 * 109.46991 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47408 * 299.99786 * 3 2 1 33 33 H 1.09000 * 109.47199 * 60.00281 * 3 2 1 34 34 H 1.08004 * 126.29673 * 359.74392 * 5 4 2 35 35 H 1.08995 * 109.47207 * 214.75658 * 10 9 7 36 36 H 1.08997 * 109.46890 * 334.75212 * 10 9 7 37 37 H 0.96997 * 120.00340 * 179.97438 * 14 13 11 38 38 H 1.08990 * 109.47836 * 210.00326 * 19 9 7 39 39 H 1.09004 * 109.47094 * 330.00811 * 19 9 7 40 40 H 1.08001 * 126.57594 * 0.03782 * 21 20 19 41 41 H 1.08002 * 126.58198 * 180.16719 * 22 21 20 42 42 H 1.07996 * 125.78954 * 179.75175 * 23 22 21 43 43 H 1.08002 * 125.98755 * 180.02562 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1903 -0.1363 2.4067 6 6 2.6632 -1.1223 3.2493 7 6 2.9953 -0.9681 4.6773 8 8 3.4702 0.0758 5.0819 9 7 2.7725 -1.9839 5.5346 10 6 2.2848 -3.2714 5.0338 11 6 3.4530 -4.1942 4.7991 12 1 4.4581 -3.8555 5.0032 13 6 3.2386 -5.4706 4.3241 14 7 2.0148 -5.8828 4.0753 15 14 4.6867 -6.6142 4.0327 16 1 5.4162 -6.8242 5.3090 17 1 4.1924 -7.9189 3.5240 18 1 5.6024 -6.0084 3.0328 19 6 3.0179 -1.8007 6.9672 20 6 1.7623 -1.2978 7.6317 21 6 0.7904 -2.0638 8.1590 22 6 -0.1894 -1.1848 8.6750 23 6 0.2383 0.0657 8.4247 24 8 1.4210 -0.0089 7.7926 25 6 2.7705 -2.3067 2.4864 26 7 2.3850 -2.0391 1.2693 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 3.1301 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.9986 0.8931 2.6716 35 1 1.6125 -3.7157 5.7677 36 1 1.7494 -3.1176 4.0969 37 1 1.8640 -6.7806 3.7407 38 1 3.3073 -2.7532 7.4110 39 1 3.8193 -1.0755 7.1087 40 1 0.7648 -3.1432 8.1855 41 1 -1.1070 -1.4639 9.1716 42 1 -0.2813 0.9754 8.6872 43 1 3.1112 -3.2657 2.8479 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190714930.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:51 Heat of formation + Delta-G solvation = 44.068589 kcal Electronic energy + Delta-G solvation = -26922.593068 eV Core-core repulsion = 23164.043962 eV Total energy + Delta-G solvation = -3758.549106 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.42811 -42.37095 -40.22875 -36.97018 -36.59703 -34.70405 -33.83260 -32.22395 -31.35122 -30.58454 -29.18224 -28.22743 -27.06217 -25.06328 -24.16688 -22.76935 -22.56251 -21.54500 -20.86373 -20.26632 -18.76327 -18.33115 -17.96947 -17.42831 -17.04459 -16.53954 -16.34461 -16.19968 -15.92463 -15.63291 -15.09991 -15.03277 -14.43583 -14.25172 -13.92759 -13.87391 -13.69382 -13.65400 -13.51659 -13.28389 -13.11144 -12.98187 -12.81961 -12.60143 -12.47003 -12.35915 -12.20067 -12.05415 -11.80355 -11.73355 -10.89290 -10.77632 -10.59009 -10.36635 -9.68603 -9.49013 -9.35218 -8.17891 -6.32710 0.67220 0.76823 1.32563 1.45862 1.47815 1.51367 1.54589 1.70775 2.11121 2.37556 2.43491 2.60506 3.11839 3.50377 3.81449 3.83839 3.91884 3.96086 4.09682 4.16873 4.19161 4.29459 4.42923 4.52949 4.62457 4.63755 4.73600 4.79034 4.84541 4.89236 4.94037 4.97162 5.06745 5.16469 5.22145 5.22866 5.29058 5.61545 5.65881 5.72141 5.81027 6.05639 6.08080 6.27757 6.55540 6.69298 6.83392 7.30287 7.41665 8.86629 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.007607 B = 0.006275 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3679.767453 B = 4460.810966 C = 7181.486535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.140 3.860 3 C -0.159 4.159 4 N -0.353 5.353 5 C 0.124 3.876 6 C -0.313 4.313 7 C 0.593 3.407 8 O -0.592 6.592 9 N -0.589 5.589 10 C 0.249 3.751 11 C -0.545 4.545 12 H 0.059 0.941 13 C 0.032 3.968 14 N -0.911 5.911 15 Si 0.950 3.050 16 H -0.268 1.268 17 H -0.283 1.283 18 H -0.274 1.274 19 C 0.197 3.803 20 C -0.042 4.042 21 C -0.206 4.206 22 C -0.224 4.224 23 C -0.043 4.043 24 O -0.190 6.190 25 C 0.085 3.915 26 N -0.334 5.334 27 H 0.062 0.938 28 H 0.111 0.889 29 H 0.044 0.956 30 H 0.106 0.894 31 H 0.058 0.942 32 H 0.114 0.886 33 H 0.072 0.928 34 H 0.206 0.794 35 H 0.018 0.982 36 H 0.036 0.964 37 H 0.268 0.732 38 H 0.119 0.881 39 H 0.087 0.913 40 H 0.147 0.853 41 H 0.173 0.827 42 H 0.240 0.760 43 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.468 12.895 -2.225 14.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.040 3.960 3 C -0.217 4.217 4 N -0.132 5.132 5 C -0.029 4.029 6 C -0.328 4.328 7 C 0.383 3.617 8 O -0.475 6.475 9 N -0.318 5.318 10 C 0.128 3.872 11 C -0.583 4.583 12 H 0.077 0.923 13 C -0.170 4.170 14 N -0.549 5.549 15 Si 0.775 3.225 16 H -0.193 1.193 17 H -0.209 1.209 18 H -0.199 1.199 19 C 0.074 3.926 20 C -0.093 4.093 21 C -0.226 4.226 22 C -0.243 4.243 23 C -0.111 4.111 24 O -0.087 6.087 25 C -0.101 4.101 26 N -0.154 5.154 27 H 0.081 0.919 28 H 0.129 0.871 29 H 0.063 0.937 30 H 0.124 0.876 31 H 0.077 0.923 32 H 0.132 0.868 33 H 0.091 0.909 34 H 0.222 0.778 35 H 0.036 0.964 36 H 0.054 0.946 37 H 0.077 0.923 38 H 0.137 0.863 39 H 0.105 0.895 40 H 0.165 0.835 41 H 0.190 0.810 42 H 0.257 0.743 43 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -5.398 13.068 -3.521 14.571 hybrid contribution 0.571 -1.121 0.903 1.548 sum -4.827 11.947 -2.618 13.149 Atomic orbital electron populations 1.22225 0.92315 1.02538 1.04609 1.21797 0.95916 0.93960 0.84310 1.22229 1.01912 0.92092 1.05457 1.49141 1.48102 1.06928 1.09054 1.22959 0.96029 0.99276 0.84602 1.20291 1.21443 0.95575 0.95484 1.17584 0.76513 0.82396 0.85166 1.90638 1.47618 1.29442 1.79839 1.48028 1.64358 1.13676 1.05757 1.19352 0.94338 0.78358 0.95104 1.21574 0.93702 0.98022 1.45014 0.92299 1.25568 0.97874 0.98924 0.94669 1.70015 1.21259 1.19305 1.44293 0.85729 0.79811 0.78116 0.78835 1.19329 1.20881 1.19895 1.19705 0.90996 1.01946 0.80000 1.23045 1.00611 0.81152 1.04541 1.21885 0.95329 1.01152 1.04260 1.22138 1.02572 0.92423 1.07134 1.24876 0.85545 1.01475 0.99157 1.84075 1.35097 1.28549 1.60942 1.25060 0.95343 0.99984 0.89675 1.77130 1.23054 0.94238 1.21019 0.91896 0.87069 0.93727 0.87565 0.92260 0.86777 0.90897 0.77766 0.96386 0.94603 0.92260 0.86331 0.89465 0.83510 0.80975 0.74344 0.78537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.84 9.52 71.98 0.69 -2.16 16 2 C 0.14 2.94 3.91 44.99 0.18 3.12 16 3 C -0.16 -2.28 8.82 71.98 0.64 -1.65 16 4 N -0.35 -11.38 3.50 -325.74 -1.14 -12.51 16 5 C 0.12 4.22 10.54 84.28 0.89 5.11 16 6 C -0.31 -13.38 5.46 -20.15 -0.11 -13.49 16 7 C 0.59 27.15 7.59 86.66 0.66 27.81 16 8 O -0.59 -28.47 16.61 -4.06 -0.07 -28.53 16 9 N -0.59 -26.41 2.44 -834.40 -2.04 -28.44 16 10 C 0.25 12.21 4.69 85.63 0.40 12.61 16 11 C -0.54 -27.83 7.28 25.60 0.19 -27.65 16 12 H 0.06 3.04 7.81 -2.91 -0.02 3.01 16 13 C 0.03 1.63 5.27 84.65 0.45 2.07 16 14 N -0.91 -49.65 13.29 21.44 0.28 -49.36 16 15 Si 0.95 41.49 29.54 68.60 2.03 43.52 16 16 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 17 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 18 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 19 C 0.20 7.76 5.99 85.63 0.51 8.27 16 20 C -0.04 -1.58 6.90 24.83 0.17 -1.41 16 21 C -0.21 -7.03 10.81 22.19 0.24 -6.79 16 22 C -0.22 -6.20 10.91 22.19 0.24 -5.96 16 23 C -0.04 -1.16 12.09 66.97 0.81 -0.35 16 24 O -0.19 -6.84 10.65 -2.51 -0.03 -6.86 16 25 C 0.09 3.86 9.55 85.65 0.82 4.68 16 26 N -0.33 -13.84 12.50 -56.27 -0.70 -14.55 16 27 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.07 0.99 7.13 -2.39 -0.02 0.97 16 34 H 0.21 5.50 7.23 -2.91 -0.02 5.48 16 35 H 0.02 0.93 8.11 -2.39 -0.02 0.91 16 36 H 0.04 1.89 4.93 -2.39 -0.01 1.88 16 37 H 0.27 13.99 8.31 -92.71 -0.77 13.22 16 38 H 0.12 4.39 8.07 -2.39 -0.02 4.37 16 39 H 0.09 3.44 7.37 -2.39 -0.02 3.42 16 40 H 0.15 4.93 8.06 -2.91 -0.02 4.91 16 41 H 0.17 3.62 8.06 -2.91 -0.02 3.60 16 42 H 0.24 3.86 8.06 -2.91 -0.02 3.84 16 43 H 0.20 9.99 4.60 -2.91 -0.01 9.97 16 Total: -1.00 -69.15 365.75 6.12 -63.03 By element: Atomic # 1 Polarization: 28.46 SS G_CDS: 1.02 Total: 29.49 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: 6.76 Total: 4.23 kcal Atomic # 7 Polarization: -101.27 SS G_CDS: -3.59 Total: -104.87 kcal Atomic # 8 Polarization: -35.30 SS G_CDS: -0.09 Total: -35.40 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Total: -69.15 6.12 -63.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190714930.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.096 kcal (2) G-P(sol) polarization free energy of solvation -69.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds