Wall clock time and date at job start Tue Mar 31 2020 12:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.67202 * 2 1 4 4 C 1.53347 * 109.70848 * 239.48121 * 2 1 3 5 5 C 1.52913 * 108.67414 * 172.71735 * 4 2 1 6 6 N 1.45750 * 110.49273 * 50.75507 * 5 4 2 7 7 C 1.33358 * 124.10225 * 340.92115 * 6 5 4 8 8 O 1.21286 * 118.24373 * 182.22792 * 7 6 5 9 9 C 1.50173 * 123.51230 * 2.22563 * 7 6 5 10 10 H 1.08998 * 109.33564 * 222.33514 * 9 7 6 11 11 N 1.46498 * 109.40168 * 102.54446 * 9 7 6 12 12 C 1.34771 * 119.99764 * 84.57515 * 11 9 7 13 13 O 1.21577 * 120.00380 * 359.97438 * 12 11 9 14 14 N 1.34780 * 119.99538 * 180.02562 * 12 11 9 15 15 C 1.39247 * 119.99807 * 185.68207 * 14 12 11 16 16 C 1.39483 * 119.83477 * 214.93354 * 15 14 12 17 17 C 1.36374 * 120.16578 * 180.27452 * 16 15 14 18 18 C 1.40865 * 119.82892 * 359.48433 * 17 16 15 19 19 C 1.41154 * 120.16299 * 180.22762 * 18 17 16 20 20 H 1.07998 * 120.00065 * 145.69824 * 19 18 17 21 21 C 1.39895 * 119.99945 * 325.70322 * 19 18 17 22 22 N 1.30874 * 120.00320 * 354.48268 * 21 19 18 23 23 Si 1.86804 * 119.99858 * 174.48294 * 21 19 18 24 24 H 1.48500 * 109.47111 * 60.00153 * 23 21 19 25 25 H 1.48505 * 109.47006 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47185 * 300.00045 * 23 21 19 27 27 C 1.40872 * 119.67382 * 0.24774 * 18 17 16 28 28 C 1.36367 * 119.82801 * 359.97438 * 27 18 17 29 29 H 1.09000 * 109.47592 * 299.50100 * 1 2 3 30 30 H 1.09000 * 109.47101 * 59.50673 * 1 2 3 31 31 H 1.09002 * 109.46707 * 179.50578 * 1 2 3 32 32 H 1.09002 * 109.60005 * 292.47505 * 4 2 1 33 33 H 1.09001 * 109.60187 * 52.95906 * 4 2 1 34 34 H 1.09002 * 109.29863 * 171.06497 * 5 4 2 35 35 H 1.08998 * 109.30348 * 290.43907 * 5 4 2 36 36 H 0.97003 * 117.95430 * 160.92464 * 6 5 4 37 37 H 0.97006 * 119.99815 * 264.57569 * 11 9 7 38 38 H 0.96998 * 120.00344 * 5.68178 * 14 12 11 39 39 H 1.07997 * 119.91393 * 0.03526 * 16 15 14 40 40 H 1.07997 * 120.08274 * 179.75442 * 17 16 15 41 41 H 0.96995 * 120.00464 * 179.97438 * 22 21 19 42 42 H 1.08000 * 120.08235 * 180.02562 * 27 18 17 43 43 H 1.07999 * 119.91618 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8969 1.0264 0.0000 4 6 2.0471 -0.7331 -1.2436 5 6 3.5650 -0.5629 -1.3165 6 7 4.1800 -0.9183 -0.0438 7 6 3.5212 -0.9780 1.1141 8 8 4.1475 -1.2457 2.1177 9 6 2.0453 -0.7314 1.2421 10 1 1.8566 -0.1217 2.1256 11 7 1.3478 -2.0126 1.3768 12 6 1.2338 -2.5937 2.5874 13 8 1.7102 -2.0550 3.5677 14 7 0.5924 -3.7727 2.7112 15 6 0.3707 -4.3153 3.9743 16 6 0.4125 -5.6980 4.1526 17 6 0.1908 -6.2370 5.3855 18 6 -0.0701 -5.3929 6.4826 19 6 -0.2958 -5.9430 7.7628 20 1 0.0404 -5.4165 8.6438 21 6 -0.9550 -7.1703 7.8905 22 7 -1.4576 -7.7563 6.8337 23 14 -1.1178 -7.9728 9.5695 24 1 -1.8644 -7.0682 10.4802 25 1 -1.8528 -9.2563 9.4355 26 1 0.2338 -8.2318 10.1276 27 6 -0.1052 -3.9971 6.2958 28 6 0.1139 -3.4730 5.0561 29 1 -0.3634 0.5060 0.8944 30 1 -0.3633 0.5215 -0.8855 31 1 -0.3633 -1.0277 -0.0089 32 1 1.8009 -1.7926 -1.1724 33 1 1.5881 -0.3078 -2.1361 34 1 3.9625 -1.2070 -2.1010 35 1 3.8003 0.4748 -1.5530 36 1 5.1279 -1.1243 -0.0386 37 1 0.9680 -2.4426 0.5946 38 1 0.2853 -4.2431 1.9205 39 1 0.6172 -6.3436 3.3113 40 1 0.2196 -7.3081 5.5212 41 1 -1.9143 -8.6074 6.9221 42 1 -0.3043 -3.3438 7.1324 43 1 0.0870 -2.4031 4.9111 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193929400.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:45 Heat of formation + Delta-G solvation = -41.377923 kcal Electronic energy + Delta-G solvation = -26257.663875 eV Core-core repulsion = 22495.409530 eV Total energy + Delta-G solvation = -3762.254345 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.01163 -39.42712 -37.45524 -37.03334 -35.08229 -34.25150 -33.03938 -32.39589 -29.65154 -29.44492 -28.74289 -27.56843 -24.82345 -23.88606 -21.88110 -21.71826 -20.96819 -20.14267 -19.18685 -18.22770 -17.30876 -17.15370 -16.80014 -16.43714 -15.66538 -15.29566 -15.06119 -14.83148 -14.51713 -13.92608 -13.82155 -13.75525 -13.60310 -13.10551 -12.91933 -12.68343 -12.59542 -12.22593 -12.04828 -11.69949 -11.63123 -11.43992 -11.28250 -11.07584 -11.02924 -10.89738 -10.47586 -10.20003 -10.03460 -9.71489 -9.44488 -9.26075 -9.15818 -8.87737 -8.70461 -7.47401 -6.78773 -6.59496 -4.23850 2.32540 2.73855 3.02854 3.12893 3.15766 3.16631 3.17301 3.31643 3.77045 4.03834 4.16560 4.23169 4.26359 4.41349 4.64687 4.77928 4.83956 4.95943 5.05291 5.24412 5.32974 5.36287 5.41710 5.59800 5.73139 5.76141 5.91403 6.24771 6.41502 6.47031 6.60321 6.81374 6.83188 7.09940 7.14290 7.22115 7.32173 7.41666 7.70230 7.90933 8.01623 8.14163 8.15779 8.36972 8.50173 8.69704 8.98582 9.00590 9.16046 10.36554 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.032335 B = 0.002582 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.739123 B =10843.371260 C =11018.729881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.105 4.105 3 H 0.093 0.907 4 C -0.134 4.134 5 C 0.111 3.889 6 N -0.725 5.725 7 C 0.499 3.501 8 O -0.519 6.519 9 C 0.165 3.835 10 H 0.119 0.881 11 N -0.736 5.736 12 C 0.693 3.307 13 O -0.555 6.555 14 N -0.667 5.667 15 C 0.027 3.973 16 C -0.121 4.121 17 C -0.138 4.138 18 C 0.104 3.896 19 C -0.465 4.465 20 H 0.075 0.925 21 C 0.072 3.928 22 N -0.813 5.813 23 Si 0.912 3.088 24 H -0.267 1.267 25 H -0.280 1.280 26 H -0.266 1.266 27 C -0.203 4.203 28 C -0.082 4.082 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.397 0.603 37 H 0.393 0.607 38 H 0.390 0.610 39 H 0.090 0.910 40 H 0.121 0.879 41 H 0.278 0.722 42 H 0.096 0.904 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.335 11.807 -20.969 24.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.124 4.124 3 H 0.111 0.889 4 C -0.172 4.172 5 C -0.014 4.014 6 N -0.380 5.380 7 C 0.283 3.717 8 O -0.392 6.392 9 C 0.055 3.945 10 H 0.137 0.863 11 N -0.396 5.396 12 C 0.393 3.607 13 O -0.429 6.429 14 N -0.313 5.313 15 C -0.065 4.065 16 C -0.142 4.142 17 C -0.158 4.158 18 C 0.102 3.898 19 C -0.496 4.496 20 H 0.093 0.907 21 C -0.143 4.143 22 N -0.441 5.441 23 Si 0.737 3.263 24 H -0.192 1.192 25 H -0.205 1.205 26 H -0.190 1.190 27 C -0.223 4.223 28 C -0.103 4.103 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.107 0.893 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.232 0.768 37 H 0.228 0.772 38 H 0.223 0.777 39 H 0.108 0.892 40 H 0.138 0.862 41 H 0.088 0.912 42 H 0.114 0.886 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.715 12.024 -19.536 23.239 hybrid contribution -0.061 -0.987 -0.306 1.036 sum 3.654 11.037 -19.842 22.997 Atomic orbital electron populations 1.21767 0.93284 1.02660 1.02435 1.21637 0.97556 1.00008 0.93167 0.88922 1.21992 0.94563 1.01746 0.98930 1.21344 0.93744 1.00779 0.85485 1.45579 1.13334 1.71441 1.07659 1.20802 0.90965 0.77142 0.82816 1.90860 1.67651 1.45606 1.35066 1.20668 0.86999 0.86185 1.00655 0.86309 1.44950 1.61992 1.23626 1.09071 1.16000 0.79475 0.81938 0.83270 1.90986 1.51290 1.64306 1.36304 1.42094 1.59762 1.21144 1.08324 1.17003 1.14254 0.91728 0.83525 1.20239 1.04371 0.92039 0.97511 1.20904 1.03180 1.00048 0.91623 1.17657 0.88006 0.90619 0.93537 1.19443 1.33386 1.03351 0.93464 0.90652 1.25833 0.93690 0.96383 0.98348 1.69778 1.28283 1.15632 1.30380 0.86319 0.79217 0.78458 0.82330 1.19166 1.20511 1.19043 1.20782 1.10561 0.95442 0.95555 1.20264 0.99590 0.97784 0.92628 0.91818 0.92071 0.92100 0.90915 0.89272 0.90609 0.91613 0.76787 0.77158 0.77706 0.89210 0.86156 0.91171 0.88608 0.88002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 8.91 37.16 0.33 -0.57 16 2 C -0.10 -0.69 2.58 -90.40 -0.23 -0.93 16 3 H 0.09 0.53 8.13 -51.93 -0.42 0.11 16 4 C -0.13 -0.61 5.28 -26.60 -0.14 -0.75 16 5 C 0.11 0.53 7.17 -4.49 -0.03 0.50 16 6 N -0.73 -6.49 5.45 -61.39 -0.33 -6.83 16 7 C 0.50 6.79 7.24 -11.87 -0.09 6.70 16 8 O -0.52 -10.21 17.35 5.53 0.10 -10.11 16 9 C 0.16 1.93 2.27 -69.30 -0.16 1.77 16 10 H 0.12 1.68 7.58 -51.93 -0.39 1.29 16 11 N -0.74 -9.28 4.21 -60.03 -0.25 -9.53 16 12 C 0.69 12.80 8.22 -86.92 -0.71 12.08 16 13 O -0.55 -13.05 13.34 5.28 0.07 -12.98 16 14 N -0.67 -12.19 5.31 -14.10 -0.07 -12.27 16 15 C 0.03 0.63 6.26 -83.56 -0.52 0.11 16 16 C -0.12 -2.86 9.90 -39.79 -0.39 -3.25 16 17 C -0.14 -3.64 8.57 -39.26 -0.34 -3.98 16 18 C 0.10 2.89 5.50 -106.80 -0.59 2.30 16 19 C -0.47 -12.81 9.03 -37.86 -0.34 -13.15 16 20 H 0.08 2.01 7.85 -52.49 -0.41 1.59 16 21 C 0.07 1.87 5.31 -17.34 -0.09 1.78 16 22 N -0.81 -21.51 10.95 55.54 0.61 -20.91 16 23 Si 0.91 19.44 29.56 -169.99 -5.03 14.41 16 24 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 25 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 26 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 27 C -0.20 -5.35 9.74 -39.26 -0.38 -5.73 16 28 C -0.08 -2.06 8.57 -39.79 -0.34 -2.40 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.39 6.79 -51.93 -0.35 0.04 16 32 H 0.07 0.36 6.96 -51.93 -0.36 0.00 16 33 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.40 3.36 8.80 -40.82 -0.36 3.00 16 37 H 0.39 3.58 6.58 -40.82 -0.27 3.31 16 38 H 0.39 5.54 8.83 -40.82 -0.36 5.18 16 39 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 40 H 0.12 3.26 6.46 -52.49 -0.34 2.92 16 41 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 42 H 0.10 2.40 8.06 -52.49 -0.42 1.97 16 43 H 0.10 2.51 6.50 -52.49 -0.34 2.17 16 LS Contribution 351.65 15.07 5.30 5.30 Total: -1.00 -36.16 351.65 -9.35 -45.51 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -5.70 Total: 12.92 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: -4.03 Total: -5.51 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: -0.05 Total: -49.53 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: 0.17 Total: -23.09 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.03 Total: 14.41 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -36.16 -9.35 -45.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193929400.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.129 kcal (2) G-P(sol) polarization free energy of solvation -36.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds