Wall clock time and date at job start Tue Mar 31 2020 12:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.67202 * 2 1 4 4 C 1.53347 * 109.70848 * 239.48121 * 2 1 3 5 5 C 1.52913 * 108.67414 * 172.71735 * 4 2 1 6 6 N 1.45750 * 110.49273 * 50.75507 * 5 4 2 7 7 C 1.33358 * 124.10225 * 340.92115 * 6 5 4 8 8 O 1.21286 * 118.24373 * 182.22792 * 7 6 5 9 9 C 1.50173 * 123.51230 * 2.22563 * 7 6 5 10 10 H 1.08998 * 109.33564 * 222.33514 * 9 7 6 11 11 N 1.46498 * 109.40168 * 102.54446 * 9 7 6 12 12 C 1.34771 * 119.99764 * 84.57515 * 11 9 7 13 13 O 1.21577 * 120.00380 * 359.97438 * 12 11 9 14 14 N 1.34780 * 119.99538 * 180.02562 * 12 11 9 15 15 C 1.39247 * 119.99807 * 185.68207 * 14 12 11 16 16 C 1.39483 * 119.83477 * 214.93354 * 15 14 12 17 17 C 1.36374 * 120.16578 * 180.27452 * 16 15 14 18 18 C 1.40865 * 119.82892 * 359.48433 * 17 16 15 19 19 C 1.41154 * 120.16299 * 180.22762 * 18 17 16 20 20 H 1.07998 * 120.00065 * 145.69824 * 19 18 17 21 21 C 1.39895 * 119.99945 * 325.70322 * 19 18 17 22 22 N 1.30874 * 120.00320 * 354.48268 * 21 19 18 23 23 Si 1.86804 * 119.99858 * 174.48294 * 21 19 18 24 24 H 1.48500 * 109.47111 * 60.00153 * 23 21 19 25 25 H 1.48505 * 109.47006 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47185 * 300.00045 * 23 21 19 27 27 C 1.40872 * 119.67382 * 0.24774 * 18 17 16 28 28 C 1.36367 * 119.82801 * 359.97438 * 27 18 17 29 29 H 1.09000 * 109.47592 * 299.50100 * 1 2 3 30 30 H 1.09000 * 109.47101 * 59.50673 * 1 2 3 31 31 H 1.09002 * 109.46707 * 179.50578 * 1 2 3 32 32 H 1.09002 * 109.60005 * 292.47505 * 4 2 1 33 33 H 1.09001 * 109.60187 * 52.95906 * 4 2 1 34 34 H 1.09002 * 109.29863 * 171.06497 * 5 4 2 35 35 H 1.08998 * 109.30348 * 290.43907 * 5 4 2 36 36 H 0.97003 * 117.95430 * 160.92464 * 6 5 4 37 37 H 0.97006 * 119.99815 * 264.57569 * 11 9 7 38 38 H 0.96998 * 120.00344 * 5.68178 * 14 12 11 39 39 H 1.07997 * 119.91393 * 0.03526 * 16 15 14 40 40 H 1.07997 * 120.08274 * 179.75442 * 17 16 15 41 41 H 0.96995 * 120.00464 * 179.97438 * 22 21 19 42 42 H 1.08000 * 120.08235 * 180.02562 * 27 18 17 43 43 H 1.07999 * 119.91618 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8969 1.0264 0.0000 4 6 2.0471 -0.7331 -1.2436 5 6 3.5650 -0.5629 -1.3165 6 7 4.1800 -0.9183 -0.0438 7 6 3.5212 -0.9780 1.1141 8 8 4.1475 -1.2457 2.1177 9 6 2.0453 -0.7314 1.2421 10 1 1.8566 -0.1217 2.1256 11 7 1.3478 -2.0126 1.3768 12 6 1.2338 -2.5937 2.5874 13 8 1.7102 -2.0550 3.5677 14 7 0.5924 -3.7727 2.7112 15 6 0.3707 -4.3153 3.9743 16 6 0.4125 -5.6980 4.1526 17 6 0.1908 -6.2370 5.3855 18 6 -0.0701 -5.3929 6.4826 19 6 -0.2958 -5.9430 7.7628 20 1 0.0404 -5.4165 8.6438 21 6 -0.9550 -7.1703 7.8905 22 7 -1.4576 -7.7563 6.8337 23 14 -1.1178 -7.9728 9.5695 24 1 -1.8644 -7.0682 10.4802 25 1 -1.8528 -9.2563 9.4355 26 1 0.2338 -8.2318 10.1276 27 6 -0.1052 -3.9971 6.2958 28 6 0.1139 -3.4730 5.0561 29 1 -0.3634 0.5060 0.8944 30 1 -0.3633 0.5215 -0.8855 31 1 -0.3633 -1.0277 -0.0089 32 1 1.8009 -1.7926 -1.1724 33 1 1.5881 -0.3078 -2.1361 34 1 3.9625 -1.2070 -2.1010 35 1 3.8003 0.4748 -1.5530 36 1 5.1279 -1.1243 -0.0386 37 1 0.9680 -2.4426 0.5946 38 1 0.2853 -4.2431 1.9205 39 1 0.6172 -6.3436 3.3113 40 1 0.2196 -7.3081 5.5212 41 1 -1.9143 -8.6074 6.9221 42 1 -0.3043 -3.3438 7.1324 43 1 0.0870 -2.4031 4.9111 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193929400.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:44 Heat of formation + Delta-G solvation = -68.680458 kcal Electronic energy + Delta-G solvation = -26258.847802 eV Core-core repulsion = 22495.409530 eV Total energy + Delta-G solvation = -3763.438272 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.08276 -40.86903 -39.18134 -38.06459 -36.29862 -35.83666 -34.75060 -33.52580 -31.50066 -30.83987 -29.98341 -28.51747 -26.64450 -24.56641 -23.56722 -22.81152 -22.45044 -21.82824 -20.04356 -19.67294 -19.16472 -18.19399 -18.14603 -17.50259 -17.05155 -16.82375 -16.12842 -15.92366 -15.81017 -15.67455 -15.07121 -14.87739 -14.69021 -14.44610 -14.14079 -14.00639 -13.83633 -13.62714 -13.37726 -13.30862 -12.81275 -12.76494 -12.69251 -12.35040 -12.20013 -11.89132 -11.81173 -11.64630 -11.59404 -11.31574 -11.22373 -11.05013 -10.56453 -10.08489 -10.03195 -9.47631 -8.71751 -8.53611 -6.28898 0.84666 1.12589 1.20913 1.39962 1.49755 1.51474 1.99619 2.10504 2.25469 2.40457 2.82472 3.34778 3.46106 3.61426 3.70776 3.74609 3.88253 4.37068 4.41635 4.44883 4.48162 4.54067 4.57946 4.86725 4.90663 4.98561 5.02344 5.09923 5.13697 5.14316 5.25298 5.31424 5.34894 5.43375 5.44011 5.64356 5.76792 5.84870 6.02847 6.09672 6.18189 6.31083 6.39314 6.67088 6.96624 7.01071 7.09603 7.21071 7.64579 8.44133 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.032335 B = 0.002582 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.739123 B =10843.371260 C =11018.729881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.092 4.092 3 H 0.107 0.893 4 C -0.131 4.131 5 C 0.101 3.899 6 N -0.709 5.709 7 C 0.495 3.505 8 O -0.595 6.595 9 C 0.161 3.839 10 H 0.085 0.915 11 N -0.709 5.709 12 C 0.691 3.309 13 O -0.608 6.608 14 N -0.657 5.657 15 C 0.043 3.957 16 C -0.118 4.118 17 C -0.154 4.154 18 C 0.073 3.927 19 C -0.505 4.505 20 H 0.069 0.931 21 C 0.033 3.967 22 N -0.839 5.839 23 Si 0.985 3.015 24 H -0.263 1.263 25 H -0.265 1.265 26 H -0.263 1.263 27 C -0.221 4.221 28 C -0.094 4.094 29 H 0.043 0.957 30 H 0.088 0.912 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.126 0.874 34 H 0.103 0.897 35 H 0.089 0.911 36 H 0.400 0.600 37 H 0.415 0.585 38 H 0.414 0.586 39 H 0.125 0.875 40 H 0.110 0.890 41 H 0.286 0.714 42 H 0.094 0.906 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.918 11.873 -24.554 27.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 H 0.125 0.875 4 C -0.169 4.169 5 C -0.021 4.021 6 N -0.360 5.360 7 C 0.279 3.721 8 O -0.474 6.474 9 C 0.052 3.948 10 H 0.103 0.897 11 N -0.370 5.370 12 C 0.391 3.609 13 O -0.486 6.486 14 N -0.306 5.306 15 C -0.051 4.051 16 C -0.139 4.139 17 C -0.174 4.174 18 C 0.071 3.929 19 C -0.535 4.535 20 H 0.088 0.912 21 C -0.180 4.180 22 N -0.466 5.466 23 Si 0.806 3.194 24 H -0.188 1.188 25 H -0.189 1.189 26 H -0.187 1.187 27 C -0.241 4.241 28 C -0.114 4.114 29 H 0.062 0.938 30 H 0.107 0.893 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.144 0.856 34 H 0.121 0.879 35 H 0.107 0.893 36 H 0.235 0.765 37 H 0.254 0.746 38 H 0.251 0.749 39 H 0.143 0.857 40 H 0.128 0.872 41 H 0.097 0.903 42 H 0.113 0.887 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.279 12.113 -23.296 26.461 hybrid contribution 0.128 -0.867 0.576 1.049 sum 3.407 11.246 -22.720 25.579 Atomic orbital electron populations 1.21780 0.92695 1.02744 1.02856 1.21650 0.97870 1.00220 0.91385 0.87482 1.22069 0.94277 1.01644 0.98871 1.21782 0.93959 1.02845 0.83535 1.45609 1.13513 1.68948 1.07943 1.21081 0.91513 0.76440 0.83064 1.90830 1.69158 1.49500 1.37912 1.20795 0.86389 0.85374 1.02256 0.89667 1.44623 1.60918 1.23600 1.07824 1.16219 0.78852 0.81572 0.84249 1.90965 1.53320 1.65557 1.38748 1.41843 1.59838 1.21363 1.07544 1.17034 1.11622 0.91557 0.84927 1.20494 1.03092 0.92665 0.97635 1.20901 1.04395 0.99471 0.92639 1.17969 0.89224 0.91282 0.94471 1.19660 1.35431 1.05076 0.93371 0.91239 1.26664 0.92593 0.96218 1.02510 1.69826 1.28322 1.16120 1.32381 0.85212 0.79310 0.77745 0.77114 1.18779 1.18914 1.18743 1.20905 1.11503 0.95376 0.96327 1.20362 1.00046 0.98001 0.92986 0.93771 0.89284 0.92224 0.90971 0.85623 0.87878 0.89260 0.76468 0.74584 0.74918 0.85695 0.87241 0.90335 0.88750 0.88200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 8.91 71.98 0.64 -0.71 16 2 C -0.09 -0.95 2.58 -10.65 -0.03 -0.97 16 3 H 0.11 0.87 8.13 -2.38 -0.02 0.85 16 4 C -0.13 -0.55 5.28 30.68 0.16 -0.39 16 5 C 0.10 0.52 7.17 86.49 0.62 1.14 16 6 N -0.71 -11.25 5.45 -467.33 -2.55 -13.80 16 7 C 0.49 13.39 7.24 87.71 0.63 14.02 16 8 O -0.59 -24.55 17.35 -3.03 -0.05 -24.61 16 9 C 0.16 3.70 2.27 44.11 0.10 3.80 16 10 H 0.09 2.56 7.58 -2.39 -0.02 2.54 16 11 N -0.71 -17.12 4.21 -462.11 -1.94 -19.06 16 12 C 0.69 25.56 8.22 179.06 1.47 27.03 16 13 O -0.61 -29.75 13.34 -3.94 -0.05 -29.80 16 14 N -0.66 -23.39 5.31 -316.78 -1.68 -25.07 16 15 C 0.04 1.98 6.26 38.57 0.24 2.22 16 16 C -0.12 -5.57 9.90 22.13 0.22 -5.35 16 17 C -0.15 -8.36 8.57 22.48 0.19 -8.17 16 18 C 0.07 4.21 5.50 -21.28 -0.12 4.09 16 19 C -0.50 -28.92 9.03 23.39 0.21 -28.71 16 20 H 0.07 3.89 7.85 -2.91 -0.02 3.87 16 21 C 0.03 1.72 5.31 85.24 0.45 2.17 16 22 N -0.84 -45.00 10.95 21.82 0.24 -44.76 16 23 Si 0.99 40.21 29.56 68.60 2.03 42.23 16 24 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 25 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 26 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 27 C -0.22 -12.23 9.74 22.48 0.22 -12.01 16 28 C -0.09 -4.83 8.57 22.13 0.19 -4.64 16 29 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.06 0.58 6.79 -2.39 -0.02 0.56 16 32 H 0.07 0.36 6.96 -2.39 -0.02 0.35 16 33 H 0.13 -0.22 8.14 -2.39 -0.02 -0.24 16 34 H 0.10 0.10 8.14 -2.39 -0.02 0.08 16 35 H 0.09 0.16 8.14 -2.39 -0.02 0.14 16 36 H 0.40 6.17 8.80 -92.71 -0.82 5.35 16 37 H 0.42 6.42 6.58 -92.70 -0.61 5.81 16 38 H 0.41 10.73 8.83 -92.71 -0.82 9.91 16 39 H 0.13 4.90 8.06 -2.91 -0.02 4.88 16 40 H 0.11 6.10 6.46 -2.91 -0.02 6.08 16 41 H 0.29 13.89 8.30 -92.71 -0.77 13.12 16 42 H 0.09 5.04 8.06 -2.91 -0.02 5.02 16 43 H 0.10 5.14 6.50 -2.91 -0.02 5.13 16 Total: -1.00 -85.94 351.65 0.03 -85.91 By element: Atomic # 1 Polarization: 36.60 SS G_CDS: -1.17 Total: 35.43 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: 5.21 Total: -6.48 kcal Atomic # 7 Polarization: -96.75 SS G_CDS: -5.93 Total: -102.69 kcal Atomic # 8 Polarization: -54.30 SS G_CDS: -0.11 Total: -54.41 kcal Atomic # 14 Polarization: 40.21 SS G_CDS: 2.03 Total: 42.23 kcal Total: -85.94 0.03 -85.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193929400.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.231 kcal (2) G-P(sol) polarization free energy of solvation -85.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds