Wall clock time and date at job start Tue Mar 31 2020 12:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.70366 * 2 1 4 4 C 1.53326 * 109.67616 * 120.50698 * 2 1 3 5 5 C 1.52920 * 108.68710 * 187.24448 * 4 2 1 6 6 N 1.45757 * 110.49119 * 309.25987 * 5 4 2 7 7 C 1.33358 * 124.10222 * 19.09158 * 6 5 4 8 8 O 1.21285 * 118.23942 * 177.75957 * 7 6 5 9 9 C 1.50170 * 123.51019 * 357.73552 * 7 6 5 10 10 H 1.09000 * 109.40313 * 257.55698 * 9 7 6 11 11 N 1.46507 * 109.39959 * 137.73361 * 9 7 6 12 12 C 1.34774 * 119.99915 * 85.00097 * 11 9 7 13 13 O 1.21578 * 120.00230 * 359.97438 * 12 11 9 14 14 N 1.34774 * 119.99634 * 180.27930 * 12 11 9 15 15 C 1.39248 * 119.99697 * 175.04083 * 14 12 11 16 16 C 1.39482 * 119.82986 * 215.21852 * 15 14 12 17 17 C 1.36382 * 120.16269 * 179.76410 * 16 15 14 18 18 C 1.40867 * 119.83042 * 0.51306 * 17 16 15 19 19 C 1.41155 * 120.16407 * 179.76336 * 18 17 16 20 20 H 1.08001 * 120.00044 * 328.75655 * 19 18 17 21 21 C 1.39897 * 119.99574 * 148.75365 * 19 18 17 22 22 N 1.30883 * 119.99291 * 167.76678 * 21 19 18 23 23 Si 1.86796 * 120.00509 * 347.76370 * 21 19 18 24 24 H 1.48495 * 109.47095 * 92.59382 * 23 21 19 25 25 H 1.48502 * 109.47345 * 212.59675 * 23 21 19 26 26 H 1.48502 * 109.46980 * 332.59580 * 23 21 19 27 27 C 1.40874 * 119.66973 * 359.74246 * 18 17 16 28 28 C 1.36372 * 119.83055 * 0.02562 * 27 18 17 29 29 H 1.08994 * 109.47223 * 180.51114 * 1 2 3 30 30 H 1.09002 * 109.46798 * 300.51185 * 1 2 3 31 31 H 1.09003 * 109.46807 * 60.50808 * 1 2 3 32 32 H 1.09004 * 109.58995 * 67.49064 * 4 2 1 33 33 H 1.09000 * 109.60487 * 307.01392 * 4 2 1 34 34 H 1.08998 * 109.30176 * 188.94196 * 5 4 2 35 35 H 1.09001 * 109.13009 * 69.46357 * 5 4 2 36 36 H 0.96997 * 117.94752 * 199.07829 * 6 5 4 37 37 H 0.96998 * 119.99892 * 265.00175 * 11 9 7 38 38 H 0.97002 * 120.00606 * 355.03340 * 14 12 11 39 39 H 1.07991 * 119.91662 * 0.02562 * 16 15 14 40 40 H 1.08002 * 120.08097 * 180.25948 * 17 16 15 41 41 H 0.97003 * 119.99645 * 180.02562 * 22 21 19 42 42 H 1.08004 * 120.08224 * 179.97438 * 27 18 17 43 43 H 1.08000 * 119.91057 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0462 -0.7329 1.2439 5 6 3.5643 -0.5641 1.3172 6 7 4.1794 -0.9203 0.0447 7 6 3.5209 -0.9793 -1.1135 8 8 4.1474 -1.2475 -2.1168 9 6 2.0453 -0.7318 -1.2418 10 1 1.5256 -1.6849 -1.3406 11 7 1.7906 0.0868 -2.4298 12 6 1.6673 -0.4984 -3.6376 13 8 1.7679 -1.7056 -3.7413 14 7 1.4386 0.2552 -4.7313 15 6 1.4140 -0.3363 -5.9916 16 6 1.9037 0.3618 -7.0954 17 6 1.8873 -0.2129 -8.3321 18 6 1.3642 -1.5106 -8.4949 19 6 1.3392 -2.1102 -9.7725 20 1 1.2246 -1.4975 -10.6544 21 6 1.4631 -3.4982 -9.8963 22 7 1.2031 -4.0788 -11.0401 23 14 1.9995 -4.5227 -8.4293 24 1 0.8009 -4.9999 -7.6941 25 1 2.7875 -5.6893 -8.9018 26 1 2.8366 -3.6931 -7.5258 27 6 0.8666 -2.2072 -7.3761 28 6 0.8940 -1.6214 -6.1449 29 1 -0.3633 -1.0276 0.0092 30 1 -0.3633 0.5218 0.8854 31 1 -0.3633 0.5059 -0.8945 32 1 1.7991 -1.7922 1.1728 33 1 1.5873 -0.3070 2.1361 34 1 3.9610 -1.2083 2.1019 35 1 3.7973 0.4746 1.5517 36 1 5.1270 -1.1272 0.0399 37 1 1.7107 1.0499 -2.3471 38 1 1.2911 1.2096 -4.6405 39 1 2.3007 1.3582 -6.9697 40 1 2.2707 0.3273 -9.1852 41 1 1.2886 -5.0413 -11.1258 42 1 0.4636 -3.2024 -7.4933 43 1 0.5124 -2.1541 -5.2865 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193929412.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:49 Heat of formation + Delta-G solvation = -40.074526 kcal Electronic energy + Delta-G solvation = -26430.215736 eV Core-core repulsion = 22668.017911 eV Total energy + Delta-G solvation = -3762.197825 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.96799 -39.53588 -37.59084 -37.08128 -35.21138 -34.29372 -33.14983 -32.64151 -29.86306 -29.72353 -29.12764 -27.57916 -24.78928 -23.67240 -22.04356 -21.71630 -21.19819 -20.10996 -19.66858 -18.02558 -17.62112 -17.29174 -16.87581 -16.71878 -15.89632 -15.18234 -14.89930 -14.66952 -14.60030 -14.14178 -13.89394 -13.72912 -13.63889 -13.47700 -13.15649 -12.65347 -12.49873 -12.42158 -12.20797 -12.10199 -11.83510 -11.73359 -11.33058 -11.19432 -10.81575 -10.68276 -10.47781 -10.19920 -10.09384 -9.66383 -9.51913 -9.28826 -9.02443 -8.92350 -8.88424 -7.66945 -7.04047 -6.81012 -4.32887 2.37594 2.59753 2.81299 2.92239 3.16278 3.26907 3.36446 3.51328 3.70957 4.10491 4.14442 4.19221 4.26648 4.36469 4.60519 4.65228 4.82911 4.88555 4.99489 5.20323 5.28905 5.33687 5.40148 5.48140 5.52428 5.71417 5.85838 6.01274 6.24551 6.36693 6.52669 6.60325 6.73566 6.85864 6.99154 7.06160 7.12698 7.28765 7.53878 7.70370 7.76926 7.98652 8.13473 8.19971 8.41464 8.45793 8.73588 8.91466 9.07831 10.21157 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022680 B = 0.003133 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.296742 B = 8934.466606 C = 9349.452003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.101 4.101 3 H 0.083 0.917 4 C -0.130 4.130 5 C 0.110 3.890 6 N -0.727 5.727 7 C 0.496 3.504 8 O -0.518 6.518 9 C 0.164 3.836 10 H 0.119 0.881 11 N -0.734 5.734 12 C 0.702 3.298 13 O -0.562 6.562 14 N -0.667 5.667 15 C 0.018 3.982 16 C -0.097 4.097 17 C -0.195 4.195 18 C 0.086 3.914 19 C -0.444 4.444 20 H 0.090 0.910 21 C 0.083 3.917 22 N -0.818 5.818 23 Si 0.911 3.089 24 H -0.271 1.271 25 H -0.294 1.294 26 H -0.241 1.241 27 C -0.227 4.227 28 C -0.063 4.063 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.397 0.603 37 H 0.395 0.605 38 H 0.391 0.609 39 H 0.095 0.905 40 H 0.104 0.896 41 H 0.284 0.716 42 H 0.102 0.898 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.213 10.117 27.278 29.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.120 4.120 3 H 0.102 0.898 4 C -0.169 4.169 5 C -0.014 4.014 6 N -0.382 5.382 7 C 0.280 3.720 8 O -0.391 6.391 9 C 0.054 3.946 10 H 0.137 0.863 11 N -0.391 5.391 12 C 0.403 3.597 13 O -0.437 6.437 14 N -0.313 5.313 15 C -0.075 4.075 16 C -0.118 4.118 17 C -0.215 4.215 18 C 0.083 3.917 19 C -0.473 4.473 20 H 0.108 0.892 21 C -0.135 4.135 22 N -0.443 5.443 23 Si 0.738 3.262 24 H -0.198 1.198 25 H -0.222 1.222 26 H -0.164 1.164 27 C -0.247 4.247 28 C -0.083 4.083 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.109 0.891 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.233 0.767 37 H 0.228 0.772 38 H 0.224 0.776 39 H 0.114 0.886 40 H 0.122 0.878 41 H 0.094 0.906 42 H 0.119 0.881 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 0.373 8.686 26.399 27.793 hybrid contribution 0.598 0.300 0.753 1.007 sum 0.972 8.986 27.151 28.616 Atomic orbital electron populations 1.21816 0.93308 1.02805 1.02404 1.21547 0.97435 1.00025 0.92993 0.89845 1.21950 0.94410 1.02155 0.98357 1.21367 0.93778 1.00750 0.85546 1.45595 1.13353 1.71632 1.07619 1.20853 0.91072 0.77139 0.82945 1.90866 1.67534 1.45683 1.35029 1.20565 0.91414 0.97737 0.84919 0.86311 1.44777 1.79195 1.09566 1.05596 1.15881 0.77937 0.85815 0.80095 1.90923 1.56286 1.12310 1.84194 1.41977 1.74621 1.10249 1.04489 1.16912 1.12138 0.96276 0.82180 1.20165 1.00355 0.98456 0.92815 1.20589 1.07572 0.97844 0.95504 1.17798 0.88996 0.92074 0.92866 1.19435 1.42473 0.92079 0.93351 0.89189 1.26131 0.91776 0.98407 0.97160 1.69684 1.35985 1.12408 1.26217 0.86337 0.80038 0.78498 0.81282 1.19755 1.22215 1.16382 1.20734 1.09561 1.00945 0.93443 1.20472 0.97111 0.93977 0.96770 0.92045 0.92007 0.91845 0.90386 0.89074 0.90451 0.91731 0.76720 0.77153 0.77551 0.88642 0.87802 0.90595 0.88050 0.86926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.12 37.16 0.34 -0.50 16 2 C -0.10 -0.63 2.30 -90.41 -0.21 -0.83 16 3 H 0.08 0.43 8.10 -51.93 -0.42 0.01 16 4 C -0.13 -0.57 5.32 -26.60 -0.14 -0.71 16 5 C 0.11 0.51 7.17 -4.48 -0.03 0.47 16 6 N -0.73 -6.40 5.45 -61.39 -0.33 -6.74 16 7 C 0.50 6.65 7.44 -11.87 -0.09 6.57 16 8 O -0.52 -10.15 16.58 4.61 0.08 -10.08 16 9 C 0.16 1.85 2.07 -69.30 -0.14 1.71 16 10 H 0.12 1.58 7.52 -51.93 -0.39 1.19 16 11 N -0.73 -9.25 4.70 -60.03 -0.28 -9.54 16 12 C 0.70 12.83 7.83 -86.92 -0.68 12.15 16 13 O -0.56 -13.06 12.99 4.35 0.06 -13.01 16 14 N -0.67 -11.76 5.31 -14.10 -0.07 -11.84 16 15 C 0.02 0.39 6.30 -83.57 -0.53 -0.13 16 16 C -0.10 -2.11 9.90 -39.79 -0.39 -2.50 16 17 C -0.20 -4.69 9.74 -39.26 -0.38 -5.07 16 18 C 0.09 2.30 5.13 -106.80 -0.55 1.75 16 19 C -0.44 -12.57 9.59 -37.85 -0.36 -12.94 16 20 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 21 C 0.08 2.31 5.47 -17.34 -0.09 2.21 16 22 N -0.82 -22.92 13.93 55.55 0.77 -22.15 16 23 Si 0.91 23.05 24.39 -169.99 -4.15 18.90 16 24 H -0.27 -6.70 6.67 56.52 0.38 -6.32 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 26 H -0.24 -6.49 6.67 56.52 0.38 -6.11 16 27 C -0.23 -5.99 6.93 -39.26 -0.27 -6.26 16 28 C -0.06 -1.57 8.61 -39.79 -0.34 -1.91 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.42 7.97 -51.93 -0.41 0.01 16 32 H 0.08 0.40 8.12 -51.93 -0.42 -0.03 16 33 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 36 H 0.40 3.32 8.80 -40.82 -0.36 2.96 16 37 H 0.39 3.54 8.61 -40.82 -0.35 3.19 16 38 H 0.39 5.17 8.83 -40.82 -0.36 4.81 16 39 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 40 H 0.10 2.32 8.06 -52.49 -0.42 1.90 16 41 H 0.28 7.26 8.30 -40.82 -0.34 6.92 16 42 H 0.10 2.69 4.40 -52.48 -0.23 2.46 16 43 H 0.11 2.79 6.22 -52.49 -0.33 2.47 16 LS Contribution 348.49 15.07 5.25 5.25 Total: -1.00 -37.39 348.49 -8.40 -45.79 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -5.84 Total: 9.40 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -3.88 Total: -6.01 kcal Atomic # 7 Polarization: -50.35 SS G_CDS: 0.08 Total: -50.26 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: 0.13 Total: -23.08 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -4.15 Total: 18.90 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -37.39 -8.40 -45.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193929412.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.719 kcal (2) G-P(sol) polarization free energy of solvation -37.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds