Wall clock time and date at job start Tue Mar 31 2020 12:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.70366 * 2 1 4 4 C 1.53326 * 109.67616 * 120.50698 * 2 1 3 5 5 C 1.52920 * 108.68710 * 187.24448 * 4 2 1 6 6 N 1.45757 * 110.49119 * 309.25987 * 5 4 2 7 7 C 1.33358 * 124.10222 * 19.09158 * 6 5 4 8 8 O 1.21285 * 118.23942 * 177.75957 * 7 6 5 9 9 C 1.50170 * 123.51019 * 357.73552 * 7 6 5 10 10 H 1.09000 * 109.40313 * 257.55698 * 9 7 6 11 11 N 1.46507 * 109.39959 * 137.73361 * 9 7 6 12 12 C 1.34774 * 119.99915 * 85.00097 * 11 9 7 13 13 O 1.21578 * 120.00230 * 359.97438 * 12 11 9 14 14 N 1.34774 * 119.99634 * 180.27930 * 12 11 9 15 15 C 1.39248 * 119.99697 * 175.04083 * 14 12 11 16 16 C 1.39482 * 119.82986 * 215.21852 * 15 14 12 17 17 C 1.36382 * 120.16269 * 179.76410 * 16 15 14 18 18 C 1.40867 * 119.83042 * 0.51306 * 17 16 15 19 19 C 1.41155 * 120.16407 * 179.76336 * 18 17 16 20 20 H 1.08001 * 120.00044 * 328.75655 * 19 18 17 21 21 C 1.39897 * 119.99574 * 148.75365 * 19 18 17 22 22 N 1.30883 * 119.99291 * 167.76678 * 21 19 18 23 23 Si 1.86796 * 120.00509 * 347.76370 * 21 19 18 24 24 H 1.48495 * 109.47095 * 92.59382 * 23 21 19 25 25 H 1.48502 * 109.47345 * 212.59675 * 23 21 19 26 26 H 1.48502 * 109.46980 * 332.59580 * 23 21 19 27 27 C 1.40874 * 119.66973 * 359.74246 * 18 17 16 28 28 C 1.36372 * 119.83055 * 0.02562 * 27 18 17 29 29 H 1.08994 * 109.47223 * 180.51114 * 1 2 3 30 30 H 1.09002 * 109.46798 * 300.51185 * 1 2 3 31 31 H 1.09003 * 109.46807 * 60.50808 * 1 2 3 32 32 H 1.09004 * 109.58995 * 67.49064 * 4 2 1 33 33 H 1.09000 * 109.60487 * 307.01392 * 4 2 1 34 34 H 1.08998 * 109.30176 * 188.94196 * 5 4 2 35 35 H 1.09001 * 109.13009 * 69.46357 * 5 4 2 36 36 H 0.96997 * 117.94752 * 199.07829 * 6 5 4 37 37 H 0.96998 * 119.99892 * 265.00175 * 11 9 7 38 38 H 0.97002 * 120.00606 * 355.03340 * 14 12 11 39 39 H 1.07991 * 119.91662 * 0.02562 * 16 15 14 40 40 H 1.08002 * 120.08097 * 180.25948 * 17 16 15 41 41 H 0.97003 * 119.99645 * 180.02562 * 22 21 19 42 42 H 1.08004 * 120.08224 * 179.97438 * 27 18 17 43 43 H 1.08000 * 119.91057 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0462 -0.7329 1.2439 5 6 3.5643 -0.5641 1.3172 6 7 4.1794 -0.9203 0.0447 7 6 3.5209 -0.9793 -1.1135 8 8 4.1474 -1.2475 -2.1168 9 6 2.0453 -0.7318 -1.2418 10 1 1.5256 -1.6849 -1.3406 11 7 1.7906 0.0868 -2.4298 12 6 1.6673 -0.4984 -3.6376 13 8 1.7679 -1.7056 -3.7413 14 7 1.4386 0.2552 -4.7313 15 6 1.4140 -0.3363 -5.9916 16 6 1.9037 0.3618 -7.0954 17 6 1.8873 -0.2129 -8.3321 18 6 1.3642 -1.5106 -8.4949 19 6 1.3392 -2.1102 -9.7725 20 1 1.2246 -1.4975 -10.6544 21 6 1.4631 -3.4982 -9.8963 22 7 1.2031 -4.0788 -11.0401 23 14 1.9995 -4.5227 -8.4293 24 1 0.8009 -4.9999 -7.6941 25 1 2.7875 -5.6893 -8.9018 26 1 2.8366 -3.6931 -7.5258 27 6 0.8666 -2.2072 -7.3761 28 6 0.8940 -1.6214 -6.1449 29 1 -0.3633 -1.0276 0.0092 30 1 -0.3633 0.5218 0.8854 31 1 -0.3633 0.5059 -0.8945 32 1 1.7991 -1.7922 1.1728 33 1 1.5873 -0.3070 2.1361 34 1 3.9610 -1.2083 2.1019 35 1 3.7973 0.4746 1.5517 36 1 5.1270 -1.1272 0.0399 37 1 1.7107 1.0499 -2.3471 38 1 1.2911 1.2096 -4.6405 39 1 2.3007 1.3582 -6.9697 40 1 2.2707 0.3273 -9.1852 41 1 1.2886 -5.0413 -11.1258 42 1 0.4636 -3.2024 -7.4933 43 1 0.5124 -2.1541 -5.2865 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193929412.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:48 Heat of formation + Delta-G solvation = -70.306031 kcal Electronic energy + Delta-G solvation = -26431.526672 eV Core-core repulsion = 22668.017911 eV Total energy + Delta-G solvation = -3763.508762 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.02613 -40.93627 -39.34697 -37.96312 -36.39171 -35.91152 -34.93563 -33.72551 -31.75068 -31.36718 -29.98694 -28.47370 -26.52934 -24.47436 -23.61587 -23.05887 -22.56950 -21.56282 -20.58009 -19.59375 -19.18029 -18.61864 -18.16478 -17.60789 -17.33372 -16.76472 -16.16480 -15.81544 -15.62580 -15.57919 -15.33409 -15.17645 -14.93252 -14.51263 -14.35316 -14.16808 -14.08516 -13.81333 -13.69437 -13.23547 -12.76772 -12.70529 -12.67048 -12.36324 -12.32116 -12.07938 -11.83570 -11.73944 -11.71643 -11.32742 -11.19866 -11.00599 -10.70780 -10.08957 -10.04434 -9.60018 -8.92596 -8.88629 -6.43394 0.66281 0.85725 1.21301 1.29564 1.33061 1.44219 1.84851 2.07763 2.11243 2.40284 2.65574 3.28773 3.45340 3.50101 3.59776 3.78780 3.92841 4.21232 4.26406 4.35976 4.49234 4.52282 4.62259 4.64822 4.86165 4.94558 4.96604 4.97636 5.01384 5.08867 5.11111 5.23572 5.32842 5.35812 5.44565 5.50896 5.67170 5.84315 5.88067 5.92942 6.07565 6.23277 6.30230 6.39233 6.71096 6.84552 7.09572 7.21766 7.64346 8.18467 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022680 B = 0.003133 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.296742 B = 8934.466606 C = 9349.452003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.088 4.088 3 H 0.106 0.894 4 C -0.128 4.128 5 C 0.102 3.898 6 N -0.712 5.712 7 C 0.491 3.509 8 O -0.594 6.594 9 C 0.160 3.840 10 H 0.093 0.907 11 N -0.711 5.711 12 C 0.698 3.302 13 O -0.615 6.615 14 N -0.658 5.658 15 C 0.043 3.957 16 C -0.091 4.091 17 C -0.195 4.195 18 C 0.062 3.938 19 C -0.475 4.475 20 H 0.068 0.932 21 C 0.055 3.945 22 N -0.852 5.852 23 Si 0.957 3.043 24 H -0.268 1.268 25 H -0.276 1.276 26 H -0.269 1.269 27 C -0.238 4.238 28 C -0.084 4.084 29 H 0.048 0.952 30 H 0.088 0.912 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.127 0.873 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.400 0.600 37 H 0.416 0.584 38 H 0.418 0.582 39 H 0.145 0.855 40 H 0.119 0.881 41 H 0.292 0.708 42 H 0.091 0.909 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.431 12.971 31.655 34.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.107 4.107 3 H 0.124 0.876 4 C -0.166 4.166 5 C -0.021 4.021 6 N -0.364 5.364 7 C 0.276 3.724 8 O -0.473 6.473 9 C 0.050 3.950 10 H 0.111 0.889 11 N -0.368 5.368 12 C 0.399 3.601 13 O -0.493 6.493 14 N -0.306 5.306 15 C -0.051 4.051 16 C -0.112 4.112 17 C -0.215 4.215 18 C 0.059 3.941 19 C -0.505 4.505 20 H 0.086 0.914 21 C -0.159 4.159 22 N -0.480 5.480 23 Si 0.784 3.216 24 H -0.194 1.194 25 H -0.203 1.203 26 H -0.194 1.194 27 C -0.258 4.258 28 C -0.105 4.105 29 H 0.067 0.933 30 H 0.107 0.893 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.145 0.855 34 H 0.120 0.880 35 H 0.109 0.891 36 H 0.235 0.765 37 H 0.254 0.746 38 H 0.255 0.745 39 H 0.162 0.838 40 H 0.137 0.863 41 H 0.103 0.897 42 H 0.109 0.891 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.576 11.620 30.895 33.013 hybrid contribution 0.553 -0.382 -0.256 0.719 sum 1.129 11.239 30.639 32.655 Atomic orbital electron populations 1.21820 0.92767 1.02361 1.03247 1.21575 0.97690 1.00581 0.90849 0.87616 1.22031 0.94304 1.01684 0.98624 1.21786 0.93841 1.02851 0.83610 1.45639 1.13510 1.69245 1.07974 1.21195 0.91697 0.76349 0.83162 1.90833 1.69078 1.49563 1.37846 1.20801 0.90295 0.97517 0.86345 0.88883 1.44523 1.77309 1.10793 1.04178 1.16138 0.77413 0.85192 0.81399 1.90901 1.58336 1.14915 1.85196 1.41775 1.74462 1.11500 1.02911 1.17097 1.08609 0.95133 0.84291 1.20545 0.99043 1.00294 0.91280 1.20887 1.06521 0.96823 0.97277 1.17949 0.90224 0.93602 0.92338 1.19427 1.45242 0.92477 0.93352 0.91383 1.26533 0.91925 0.98911 0.98552 1.69688 1.38063 1.13166 1.27081 0.85635 0.79422 0.77695 0.78847 1.19372 1.20275 1.19425 1.20764 1.10053 1.00840 0.94166 1.20581 0.98378 0.95541 0.95977 0.93252 0.89295 0.92814 0.91374 0.85462 0.87990 0.89112 0.76480 0.74605 0.74466 0.83775 0.86269 0.89732 0.89132 0.87445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 9.12 71.98 0.66 -0.53 16 2 C -0.09 -0.77 2.30 -10.66 -0.02 -0.79 16 3 H 0.11 0.53 8.10 -2.39 -0.02 0.52 16 4 C -0.13 -0.57 5.32 30.68 0.16 -0.41 16 5 C 0.10 0.49 7.17 86.49 0.62 1.11 16 6 N -0.71 -10.98 5.45 -467.31 -2.55 -13.52 16 7 C 0.49 12.79 7.44 87.71 0.65 13.44 16 8 O -0.59 -23.76 16.58 -2.14 -0.04 -23.79 16 9 C 0.16 3.41 2.07 44.10 0.09 3.50 16 10 H 0.09 2.51 7.52 -2.39 -0.02 2.49 16 11 N -0.71 -16.62 4.70 -462.10 -2.17 -18.80 16 12 C 0.70 24.88 7.83 179.06 1.40 26.28 16 13 O -0.61 -29.12 12.99 -3.06 -0.04 -29.15 16 14 N -0.66 -21.69 5.31 -316.79 -1.68 -23.37 16 15 C 0.04 1.85 6.30 38.56 0.24 2.09 16 16 C -0.09 -3.71 9.90 22.14 0.22 -3.49 16 17 C -0.20 -9.23 9.74 22.48 0.22 -9.01 16 18 C 0.06 3.38 5.13 -21.27 -0.11 3.27 16 19 C -0.47 -28.03 9.59 23.39 0.22 -27.81 16 20 H 0.07 4.18 8.06 -2.91 -0.02 4.16 16 21 C 0.05 3.16 5.47 85.24 0.47 3.62 16 22 N -0.85 -49.51 13.93 21.82 0.30 -49.21 16 23 Si 0.96 49.44 24.39 68.60 1.67 51.11 16 24 H -0.27 -13.44 6.67 99.48 0.66 -12.78 16 25 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 26 H -0.27 -15.04 6.67 99.48 0.66 -14.37 16 27 C -0.24 -12.92 6.93 22.48 0.16 -12.77 16 28 C -0.08 -4.23 8.61 22.13 0.19 -4.04 16 29 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.05 0.56 7.97 -2.39 -0.02 0.54 16 32 H 0.07 0.49 8.12 -2.39 -0.02 0.47 16 33 H 0.13 -0.22 8.14 -2.39 -0.02 -0.24 16 34 H 0.10 0.10 8.14 -2.39 -0.02 0.08 16 35 H 0.09 0.09 8.14 -2.39 -0.02 0.07 16 36 H 0.40 6.03 8.80 -92.71 -0.82 5.22 16 37 H 0.42 6.07 8.61 -92.71 -0.80 5.28 16 38 H 0.42 9.42 8.83 -92.71 -0.82 8.60 16 39 H 0.14 4.49 8.06 -2.92 -0.02 4.46 16 40 H 0.12 5.20 8.06 -2.91 -0.02 5.18 16 41 H 0.29 15.40 8.30 -92.71 -0.77 14.63 16 42 H 0.09 5.01 4.40 -2.91 -0.01 4.99 16 43 H 0.11 5.48 6.22 -2.91 -0.02 5.46 16 Total: -1.00 -88.46 348.49 -0.77 -89.24 By element: Atomic # 1 Polarization: 24.49 SS G_CDS: -1.44 Total: 23.05 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: 5.17 Total: -5.55 kcal Atomic # 7 Polarization: -98.80 SS G_CDS: -6.10 Total: -104.90 kcal Atomic # 8 Polarization: -52.87 SS G_CDS: -0.08 Total: -52.95 kcal Atomic # 14 Polarization: 49.44 SS G_CDS: 1.67 Total: 51.11 kcal Total: -88.46 -0.77 -89.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193929412.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.930 kcal (2) G-P(sol) polarization free energy of solvation -88.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds