Wall clock time and date at job start Tue Mar 31 2020 12:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09007 * 109.67182 * 2 1 4 4 C 1.53344 * 109.67849 * 239.49699 * 2 1 3 5 5 C 1.52916 * 108.67824 * 172.69993 * 4 2 1 6 6 N 1.45749 * 110.49020 * 50.75168 * 5 4 2 7 7 C 1.33362 * 124.10401 * 340.92643 * 6 5 4 8 8 O 1.21277 * 118.24121 * 182.22452 * 7 6 5 9 9 C 1.50177 * 123.50780 * 2.22356 * 7 6 5 10 10 H 1.09000 * 109.32808 * 102.49793 * 9 7 6 11 11 N 1.46498 * 109.39997 * 222.28342 * 9 7 6 12 12 C 1.34771 * 120.00397 * 275.43287 * 11 9 7 13 13 O 1.21583 * 119.99855 * 359.97438 * 12 11 9 14 14 N 1.34777 * 120.00395 * 180.02562 * 12 11 9 15 15 C 1.39237 * 120.00320 * 174.85582 * 14 12 11 16 16 C 1.39488 * 119.83110 * 325.32522 * 15 14 12 17 17 C 1.36372 * 120.16423 * 179.76288 * 16 15 14 18 18 C 1.40871 * 119.83190 * 0.53005 * 17 16 15 19 19 C 1.41156 * 120.16222 * 179.69503 * 18 17 16 20 20 H 1.08000 * 119.99779 * 205.36624 * 19 18 17 21 21 C 1.39893 * 120.00167 * 25.38163 * 19 18 17 22 22 N 1.30880 * 119.99984 * 16.80734 * 21 19 18 23 23 Si 1.86797 * 119.99798 * 196.81704 * 21 19 18 24 24 H 1.48498 * 109.47503 * 89.99540 * 23 21 19 25 25 H 1.48504 * 109.47008 * 209.99545 * 23 21 19 26 26 H 1.48499 * 109.47115 * 329.99144 * 23 21 19 27 27 C 1.40867 * 119.67112 * 359.72322 * 18 17 16 28 28 C 1.36378 * 119.82756 * 0.02562 * 27 18 17 29 29 H 1.08995 * 109.47402 * 180.50159 * 1 2 3 30 30 H 1.08998 * 109.47270 * 300.50487 * 1 2 3 31 31 H 1.09005 * 109.47297 * 60.50224 * 1 2 3 32 32 H 1.09003 * 109.59693 * 52.94034 * 4 2 1 33 33 H 1.08997 * 109.73729 * 292.54274 * 4 2 1 34 34 H 1.09007 * 109.29946 * 290.44286 * 5 4 2 35 35 H 1.08997 * 109.30062 * 171.06687 * 5 4 2 36 36 H 0.97001 * 117.95038 * 160.64367 * 6 5 4 37 37 H 0.97004 * 119.99245 * 95.42473 * 11 9 7 38 38 H 0.97002 * 119.99595 * 354.85244 * 14 12 11 39 39 H 1.07995 * 119.91466 * 359.97438 * 16 15 14 40 40 H 1.08004 * 120.08108 * 180.25382 * 17 16 15 41 41 H 0.97006 * 119.99669 * 180.02562 * 22 21 19 42 42 H 1.07991 * 120.08653 * 180.02562 * 27 18 17 43 43 H 1.08000 * 119.91127 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8969 1.0264 0.0000 4 6 2.0463 -0.7329 -1.2440 5 6 3.5642 -0.5628 -1.3179 6 7 4.1799 -0.9183 -0.0456 7 6 3.5218 -0.9782 1.1128 8 8 4.1487 -1.2461 2.1158 9 6 2.0460 -0.7316 1.2415 10 1 1.5282 -1.6856 1.3410 11 7 1.7912 0.0866 2.4297 12 6 1.6773 -0.4978 3.6387 13 8 1.7855 -1.7043 3.7433 14 7 1.4424 0.2549 4.7318 15 6 1.2182 -0.3559 5.9628 16 6 0.5390 -1.5729 6.0200 17 6 0.3200 -2.1795 7.2216 18 6 0.7718 -1.5685 8.4078 19 6 0.5432 -2.1871 9.6558 20 1 0.5001 -1.5899 10.5546 21 6 0.3728 -3.5737 9.7285 22 7 0.7428 -4.3318 8.7278 23 14 -0.3829 -4.3432 11.2536 24 1 -1.8569 -4.4202 11.0907 25 1 0.1663 -5.7099 11.4425 26 1 -0.0589 -3.5112 12.4402 27 6 1.4524 -0.3369 8.3423 28 6 1.6685 0.2552 7.1329 29 1 -0.3634 -1.0276 0.0090 30 1 -0.3634 0.5216 0.8854 31 1 -0.3634 0.5060 -0.8945 32 1 1.5867 -0.3073 -2.1362 33 1 1.7999 -1.7924 -1.1758 34 1 3.7993 0.4751 -1.5543 35 1 3.9611 -1.2066 -2.1027 36 1 5.1269 -1.1284 -0.0418 37 1 1.7046 1.0492 2.3462 38 1 1.4295 1.2222 4.6608 39 1 0.1887 -2.0375 5.1103 40 1 -0.2025 -3.1238 7.2641 41 1 0.6243 -5.2933 8.7781 42 1 1.8020 0.1372 9.2473 43 1 2.1905 1.1993 7.0810 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193929429.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:53 Heat of formation + Delta-G solvation = -42.806487 kcal Electronic energy + Delta-G solvation = -26249.949417 eV Core-core repulsion = 22487.633125 eV Total energy + Delta-G solvation = -3762.316292 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.86450 -39.34693 -37.31695 -36.98473 -35.10196 -34.20821 -33.03670 -32.46335 -29.54707 -29.33328 -28.77521 -27.44745 -24.83838 -23.65730 -21.97012 -21.39413 -20.97429 -19.97721 -19.55555 -17.78411 -17.51688 -17.19202 -16.68708 -16.57751 -15.62988 -15.13501 -14.86547 -14.54090 -14.45402 -14.03498 -13.83494 -13.73127 -13.55206 -13.17147 -12.90035 -12.60178 -12.47213 -12.05474 -11.96343 -11.73324 -11.66943 -11.38402 -11.25234 -11.11713 -11.05699 -10.84460 -10.42318 -10.11950 -9.85203 -9.75948 -9.41221 -9.21837 -9.15811 -8.78864 -8.58642 -7.39909 -6.86307 -6.61306 -4.17562 2.48646 2.79622 3.01829 3.13978 3.16206 3.17936 3.21591 3.32778 3.88700 4.02212 4.18890 4.27349 4.34984 4.45182 4.74222 4.78298 4.89589 4.95985 5.07423 5.27638 5.35895 5.43394 5.47534 5.55818 5.79044 5.82486 5.94403 6.26517 6.46069 6.50690 6.68299 6.89765 6.94382 7.16445 7.18935 7.22278 7.40940 7.45186 7.73083 7.96297 8.12923 8.16909 8.21625 8.38312 8.61255 8.74826 9.00223 9.05518 9.27485 10.31433 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.025392 B = 0.002711 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.432583 B =10324.356013 C =10468.558543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.100 4.100 3 H 0.083 0.917 4 C -0.130 4.130 5 C 0.111 3.889 6 N -0.727 5.727 7 C 0.496 3.504 8 O -0.517 6.517 9 C 0.164 3.836 10 H 0.119 0.881 11 N -0.736 5.736 12 C 0.700 3.300 13 O -0.559 6.559 14 N -0.667 5.667 15 C 0.020 3.980 16 C -0.086 4.086 17 C -0.153 4.153 18 C 0.104 3.896 19 C -0.462 4.462 20 H 0.077 0.923 21 C 0.074 3.926 22 N -0.791 5.791 23 Si 0.908 3.092 24 H -0.268 1.268 25 H -0.279 1.279 26 H -0.263 1.263 27 C -0.214 4.214 28 C -0.108 4.108 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.397 0.603 37 H 0.393 0.607 38 H 0.389 0.611 39 H 0.101 0.899 40 H 0.119 0.881 41 H 0.280 0.720 42 H 0.095 0.905 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.167 9.693 -22.105 24.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.119 4.119 3 H 0.101 0.899 4 C -0.169 4.169 5 C -0.014 4.014 6 N -0.383 5.383 7 C 0.280 3.720 8 O -0.391 6.391 9 C 0.054 3.946 10 H 0.137 0.863 11 N -0.393 5.393 12 C 0.400 3.600 13 O -0.433 6.433 14 N -0.313 5.313 15 C -0.073 4.073 16 C -0.107 4.107 17 C -0.173 4.173 18 C 0.101 3.899 19 C -0.492 4.492 20 H 0.095 0.905 21 C -0.144 4.144 22 N -0.416 5.416 23 Si 0.733 3.267 24 H -0.194 1.194 25 H -0.204 1.204 26 H -0.187 1.187 27 C -0.234 4.234 28 C -0.129 4.129 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.109 0.891 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.232 0.768 37 H 0.227 0.773 38 H 0.221 0.779 39 H 0.119 0.881 40 H 0.137 0.863 41 H 0.091 0.909 42 H 0.113 0.887 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.354 8.197 -21.505 23.017 hybrid contribution 0.279 0.430 0.382 0.639 sum 0.633 8.627 -21.123 22.826 Atomic orbital electron populations 1.21814 0.93321 1.02845 1.02348 1.21536 0.97431 0.99970 0.92997 0.89901 1.21944 0.94373 1.02184 0.98355 1.21352 0.93789 1.00704 0.85554 1.45602 1.13362 1.71668 1.07633 1.20895 0.91133 0.77086 0.82914 1.90861 1.67509 1.45639 1.35051 1.20550 0.91298 0.97767 0.84961 0.86344 1.44798 1.79468 1.09596 1.05442 1.15892 0.78086 0.85886 0.80109 1.90959 1.55695 1.12338 1.84290 1.42039 1.74496 1.08200 1.06597 1.16965 1.09915 0.98360 0.82041 1.20418 0.98242 0.94368 0.97623 1.20975 1.03910 1.01179 0.91216 1.17646 0.88279 0.90574 0.93416 1.19512 1.43433 0.91873 0.94347 0.90504 1.25920 0.93174 0.97666 0.97649 1.69879 1.33896 1.06352 1.31482 0.86323 0.79986 0.78463 0.81955 1.19367 1.20412 1.18714 1.20527 1.07650 0.99995 0.95234 1.20016 1.01294 0.99263 0.92289 0.92028 0.91816 0.92074 0.89147 0.90369 0.91786 0.90542 0.76789 0.77299 0.77874 0.88133 0.86285 0.90913 0.88717 0.89343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.12 37.15 0.34 -0.63 16 2 C -0.10 -0.70 2.30 -90.41 -0.21 -0.91 16 3 H 0.08 0.49 8.10 -51.93 -0.42 0.07 16 4 C -0.13 -0.66 5.32 -26.60 -0.14 -0.80 16 5 C 0.11 0.57 7.17 -4.49 -0.03 0.54 16 6 N -0.73 -6.85 5.45 -61.39 -0.33 -7.19 16 7 C 0.50 7.03 7.44 -11.87 -0.09 6.94 16 8 O -0.52 -10.53 16.53 3.78 0.06 -10.47 16 9 C 0.16 2.01 2.07 -69.30 -0.14 1.87 16 10 H 0.12 1.70 7.54 -51.93 -0.39 1.31 16 11 N -0.74 -10.08 4.73 -60.03 -0.28 -10.37 16 12 C 0.70 13.75 7.70 -86.92 -0.67 13.08 16 13 O -0.56 -13.90 13.28 3.51 0.05 -13.85 16 14 N -0.67 -12.77 5.31 -14.10 -0.07 -12.85 16 15 C 0.02 0.47 6.27 -83.57 -0.52 -0.05 16 16 C -0.09 -2.27 8.57 -39.79 -0.34 -2.61 16 17 C -0.15 -4.28 8.63 -39.26 -0.34 -4.62 16 18 C 0.10 2.90 5.57 -106.80 -0.59 2.30 16 19 C -0.46 -12.74 9.04 -37.86 -0.34 -13.08 16 20 H 0.08 2.02 7.90 -52.49 -0.41 1.60 16 21 C 0.07 1.94 5.15 -17.34 -0.09 1.85 16 22 N -0.79 -21.81 10.94 55.54 0.61 -21.21 16 23 Si 0.91 19.45 29.59 -169.99 -5.03 14.42 16 24 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 25 H -0.28 -5.87 7.11 56.52 0.40 -5.46 16 26 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 27 C -0.21 -5.46 9.74 -39.26 -0.38 -5.84 16 28 C -0.11 -2.53 9.90 -39.79 -0.39 -2.92 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.49 7.99 -51.93 -0.41 0.07 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.08 0.45 8.13 -51.93 -0.42 0.03 16 34 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.40 3.53 8.80 -40.82 -0.36 3.17 16 37 H 0.39 3.95 8.60 -40.82 -0.35 3.59 16 38 H 0.39 5.74 8.83 -40.82 -0.36 5.38 16 39 H 0.10 2.65 6.48 -52.49 -0.34 2.31 16 40 H 0.12 3.44 6.18 -52.48 -0.32 3.12 16 41 H 0.28 7.05 8.30 -40.82 -0.34 6.71 16 42 H 0.09 2.25 8.06 -52.49 -0.42 1.82 16 43 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 354.80 15.07 5.35 5.35 Total: -1.00 -37.44 354.80 -9.50 -46.95 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: -5.89 Total: 14.09 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: -3.95 Total: -4.88 kcal Atomic # 7 Polarization: -51.52 SS G_CDS: -0.09 Total: -51.61 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: 0.11 Total: -24.32 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.03 Total: 14.42 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -37.44 -9.50 -46.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193929429.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.139 kcal (2) G-P(sol) polarization free energy of solvation -37.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds