Wall clock time and date at job start Tue Mar 31 2020 12:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09007 * 109.67182 * 2 1 4 4 C 1.53344 * 109.67849 * 239.49699 * 2 1 3 5 5 C 1.52916 * 108.67824 * 172.69993 * 4 2 1 6 6 N 1.45749 * 110.49020 * 50.75168 * 5 4 2 7 7 C 1.33362 * 124.10401 * 340.92643 * 6 5 4 8 8 O 1.21277 * 118.24121 * 182.22452 * 7 6 5 9 9 C 1.50177 * 123.50780 * 2.22356 * 7 6 5 10 10 H 1.09000 * 109.32808 * 102.49793 * 9 7 6 11 11 N 1.46498 * 109.39997 * 222.28342 * 9 7 6 12 12 C 1.34771 * 120.00397 * 275.43287 * 11 9 7 13 13 O 1.21583 * 119.99855 * 359.97438 * 12 11 9 14 14 N 1.34777 * 120.00395 * 180.02562 * 12 11 9 15 15 C 1.39237 * 120.00320 * 174.85582 * 14 12 11 16 16 C 1.39488 * 119.83110 * 325.32522 * 15 14 12 17 17 C 1.36372 * 120.16423 * 179.76288 * 16 15 14 18 18 C 1.40871 * 119.83190 * 0.53005 * 17 16 15 19 19 C 1.41156 * 120.16222 * 179.69503 * 18 17 16 20 20 H 1.08000 * 119.99779 * 205.36624 * 19 18 17 21 21 C 1.39893 * 120.00167 * 25.38163 * 19 18 17 22 22 N 1.30880 * 119.99984 * 16.80734 * 21 19 18 23 23 Si 1.86797 * 119.99798 * 196.81704 * 21 19 18 24 24 H 1.48498 * 109.47503 * 89.99540 * 23 21 19 25 25 H 1.48504 * 109.47008 * 209.99545 * 23 21 19 26 26 H 1.48499 * 109.47115 * 329.99144 * 23 21 19 27 27 C 1.40867 * 119.67112 * 359.72322 * 18 17 16 28 28 C 1.36378 * 119.82756 * 0.02562 * 27 18 17 29 29 H 1.08995 * 109.47402 * 180.50159 * 1 2 3 30 30 H 1.08998 * 109.47270 * 300.50487 * 1 2 3 31 31 H 1.09005 * 109.47297 * 60.50224 * 1 2 3 32 32 H 1.09003 * 109.59693 * 52.94034 * 4 2 1 33 33 H 1.08997 * 109.73729 * 292.54274 * 4 2 1 34 34 H 1.09007 * 109.29946 * 290.44286 * 5 4 2 35 35 H 1.08997 * 109.30062 * 171.06687 * 5 4 2 36 36 H 0.97001 * 117.95038 * 160.64367 * 6 5 4 37 37 H 0.97004 * 119.99245 * 95.42473 * 11 9 7 38 38 H 0.97002 * 119.99595 * 354.85244 * 14 12 11 39 39 H 1.07995 * 119.91466 * 359.97438 * 16 15 14 40 40 H 1.08004 * 120.08108 * 180.25382 * 17 16 15 41 41 H 0.97006 * 119.99669 * 180.02562 * 22 21 19 42 42 H 1.07991 * 120.08653 * 180.02562 * 27 18 17 43 43 H 1.08000 * 119.91127 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8969 1.0264 0.0000 4 6 2.0463 -0.7329 -1.2440 5 6 3.5642 -0.5628 -1.3179 6 7 4.1799 -0.9183 -0.0456 7 6 3.5218 -0.9782 1.1128 8 8 4.1487 -1.2461 2.1158 9 6 2.0460 -0.7316 1.2415 10 1 1.5282 -1.6856 1.3410 11 7 1.7912 0.0866 2.4297 12 6 1.6773 -0.4978 3.6387 13 8 1.7855 -1.7043 3.7433 14 7 1.4424 0.2549 4.7318 15 6 1.2182 -0.3559 5.9628 16 6 0.5390 -1.5729 6.0200 17 6 0.3200 -2.1795 7.2216 18 6 0.7718 -1.5685 8.4078 19 6 0.5432 -2.1871 9.6558 20 1 0.5001 -1.5899 10.5546 21 6 0.3728 -3.5737 9.7285 22 7 0.7428 -4.3318 8.7278 23 14 -0.3829 -4.3432 11.2536 24 1 -1.8569 -4.4202 11.0907 25 1 0.1663 -5.7099 11.4425 26 1 -0.0589 -3.5112 12.4402 27 6 1.4524 -0.3369 8.3423 28 6 1.6685 0.2552 7.1329 29 1 -0.3634 -1.0276 0.0090 30 1 -0.3634 0.5216 0.8854 31 1 -0.3634 0.5060 -0.8945 32 1 1.5867 -0.3073 -2.1362 33 1 1.7999 -1.7924 -1.1758 34 1 3.7993 0.4751 -1.5543 35 1 3.9611 -1.2066 -2.1027 36 1 5.1269 -1.1284 -0.0418 37 1 1.7046 1.0492 2.3462 38 1 1.4295 1.2222 4.6608 39 1 0.1887 -2.0375 5.1103 40 1 -0.2025 -3.1238 7.2641 41 1 0.6243 -5.2933 8.7781 42 1 1.8020 0.1372 9.2473 43 1 2.1905 1.1993 7.0810 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193929429.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:52 Heat of formation + Delta-G solvation = -71.925207 kcal Electronic energy + Delta-G solvation = -26251.212099 eV Core-core repulsion = 22487.633125 eV Total energy + Delta-G solvation = -3763.578975 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.98863 -40.84052 -39.13923 -37.95331 -36.37599 -35.88590 -34.76404 -33.64634 -31.41219 -30.90767 -29.93387 -28.45201 -26.65112 -24.50620 -23.28209 -22.98810 -22.54730 -21.48950 -20.55883 -19.33910 -19.14252 -18.50989 -18.03364 -17.56044 -17.17245 -16.76539 -16.06436 -15.73290 -15.71449 -15.50098 -15.16074 -14.98132 -14.77823 -14.49586 -14.15101 -13.95394 -13.72673 -13.67608 -13.34886 -13.22571 -12.80222 -12.68735 -12.65531 -12.32841 -12.29782 -11.85279 -11.75235 -11.72251 -11.68777 -11.31053 -11.25650 -11.01957 -10.50991 -10.05875 -10.03529 -9.44024 -8.82260 -8.58016 -6.24823 0.88081 1.15063 1.33281 1.38071 1.49839 1.53150 1.89567 2.14114 2.22457 2.44903 2.80246 3.34692 3.46322 3.60566 3.75837 3.79499 3.93579 4.26123 4.43443 4.47220 4.49533 4.53021 4.63240 4.86592 4.96555 4.98067 5.01558 5.07889 5.11002 5.18516 5.25286 5.31364 5.36586 5.44116 5.46556 5.66835 5.78245 5.86033 6.09725 6.13594 6.18216 6.30543 6.37555 6.69883 6.94605 7.03703 7.14754 7.23257 7.71298 8.36815 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.025392 B = 0.002711 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.432583 B =10324.356013 C =10468.558543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.087 4.087 3 H 0.106 0.894 4 C -0.128 4.128 5 C 0.102 3.898 6 N -0.711 5.711 7 C 0.491 3.509 8 O -0.594 6.594 9 C 0.160 3.840 10 H 0.090 0.910 11 N -0.712 5.712 12 C 0.696 3.304 13 O -0.616 6.616 14 N -0.658 5.658 15 C 0.030 3.970 16 C -0.100 4.100 17 C -0.177 4.177 18 C 0.071 3.929 19 C -0.495 4.495 20 H 0.083 0.917 21 C 0.027 3.973 22 N -0.833 5.833 23 Si 0.988 3.012 24 H -0.261 1.261 25 H -0.272 1.272 26 H -0.253 1.253 27 C -0.221 4.221 28 C -0.104 4.104 29 H 0.047 0.953 30 H 0.051 0.949 31 H 0.090 0.910 32 H 0.128 0.872 33 H 0.067 0.933 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.400 0.600 37 H 0.415 0.585 38 H 0.414 0.586 39 H 0.089 0.911 40 H 0.097 0.903 41 H 0.286 0.714 42 H 0.112 0.888 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.172 12.240 -24.287 27.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.106 4.106 3 H 0.124 0.876 4 C -0.166 4.166 5 C -0.021 4.021 6 N -0.363 5.363 7 C 0.276 3.724 8 O -0.473 6.473 9 C 0.050 3.950 10 H 0.108 0.892 11 N -0.369 5.369 12 C 0.397 3.603 13 O -0.494 6.494 14 N -0.306 5.306 15 C -0.064 4.064 16 C -0.120 4.120 17 C -0.197 4.197 18 C 0.068 3.932 19 C -0.525 4.525 20 H 0.101 0.899 21 C -0.187 4.187 22 N -0.460 5.460 23 Si 0.809 3.191 24 H -0.186 1.186 25 H -0.197 1.197 26 H -0.176 1.176 27 C -0.241 4.241 28 C -0.124 4.124 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.109 0.891 32 H 0.146 0.854 33 H 0.086 0.914 34 H 0.110 0.890 35 H 0.121 0.879 36 H 0.235 0.765 37 H 0.253 0.747 38 H 0.251 0.749 39 H 0.107 0.893 40 H 0.115 0.885 41 H 0.096 0.904 42 H 0.130 0.870 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.359 10.850 -23.818 26.176 hybrid contribution 0.347 -0.275 0.798 0.913 sum 0.706 10.576 -23.020 25.343 Atomic orbital electron populations 1.21820 0.92872 1.02268 1.03246 1.21571 0.97621 1.00589 0.90832 0.87554 1.22027 0.94377 1.01661 0.98553 1.21784 0.93754 1.02927 0.83588 1.45629 1.13535 1.69234 1.07936 1.21188 0.91659 0.76337 0.83204 1.90829 1.69028 1.49524 1.37920 1.20798 0.90361 0.97412 0.86395 0.89247 1.44527 1.77604 1.10824 1.03976 1.16157 0.77498 0.85212 0.81468 1.90929 1.58028 1.15128 1.85362 1.41800 1.74232 1.09402 1.05164 1.17036 1.07859 0.97309 0.84168 1.20443 0.99250 0.95788 0.96556 1.20874 1.05426 1.01074 0.92366 1.18001 0.89467 0.92059 0.93638 1.19812 1.45201 0.92975 0.94466 0.89916 1.26908 0.92810 0.97755 1.01192 1.69975 1.35094 1.06904 1.33979 0.85118 0.78989 0.77529 0.77494 1.18600 1.19651 1.17620 1.20820 1.07075 0.99319 0.96919 1.20372 1.00401 1.00528 0.91088 0.93392 0.92979 0.89116 0.85360 0.91423 0.89027 0.87925 0.76458 0.74729 0.74930 0.89258 0.88540 0.90402 0.87036 0.85015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.12 71.98 0.66 -0.89 16 2 C -0.09 -0.96 2.30 -10.66 -0.02 -0.99 16 3 H 0.11 0.76 8.10 -2.38 -0.02 0.74 16 4 C -0.13 -0.80 5.32 30.68 0.16 -0.64 16 5 C 0.10 0.64 7.17 86.49 0.62 1.26 16 6 N -0.71 -12.20 5.45 -467.32 -2.55 -14.74 16 7 C 0.49 13.93 7.44 87.71 0.65 14.59 16 8 O -0.59 -25.19 16.53 -1.32 -0.02 -25.21 16 9 C 0.16 3.87 2.07 44.10 0.09 3.96 16 10 H 0.09 2.73 7.54 -2.39 -0.02 2.71 16 11 N -0.71 -19.12 4.73 -462.11 -2.18 -21.30 16 12 C 0.70 27.85 7.70 179.06 1.38 29.23 16 13 O -0.62 -32.31 13.28 -2.27 -0.03 -32.34 16 14 N -0.66 -24.80 5.31 -316.79 -1.68 -26.49 16 15 C 0.03 1.45 6.27 38.57 0.24 1.70 16 16 C -0.10 -5.52 8.57 22.14 0.19 -5.33 16 17 C -0.18 -10.54 8.63 22.48 0.19 -10.35 16 18 C 0.07 4.12 5.57 -21.28 -0.12 4.00 16 19 C -0.49 -28.18 9.04 23.39 0.21 -27.97 16 20 H 0.08 4.43 7.90 -2.91 -0.02 4.41 16 21 C 0.03 1.47 5.15 85.24 0.44 1.91 16 22 N -0.83 -48.22 10.94 21.82 0.24 -47.98 16 23 Si 0.99 40.69 29.59 68.60 2.03 42.72 16 24 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 25 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 26 H -0.25 -9.89 7.11 99.48 0.71 -9.18 16 27 C -0.22 -11.33 9.74 22.48 0.22 -11.11 16 28 C -0.10 -4.73 9.90 22.13 0.22 -4.51 16 29 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.05 0.69 7.99 -2.39 -0.02 0.67 16 31 H 0.09 0.48 8.14 -2.38 -0.02 0.46 16 32 H 0.13 -0.03 8.14 -2.39 -0.02 -0.05 16 33 H 0.07 0.61 8.13 -2.39 -0.02 0.59 16 34 H 0.09 0.21 8.14 -2.38 -0.02 0.19 16 35 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 36 H 0.40 6.63 8.80 -92.71 -0.82 5.81 16 37 H 0.42 7.42 8.60 -92.70 -0.80 6.62 16 38 H 0.41 11.30 8.83 -92.71 -0.82 10.48 16 39 H 0.09 5.04 6.48 -2.91 -0.02 5.02 16 40 H 0.10 6.04 6.18 -2.91 -0.02 6.02 16 41 H 0.29 15.05 8.30 -92.70 -0.77 14.28 16 42 H 0.11 5.22 8.06 -2.91 -0.02 5.19 16 43 H 0.13 4.84 8.06 -2.91 -0.02 4.82 16 Total: -1.00 -90.15 354.80 -0.42 -90.57 By element: Atomic # 1 Polarization: 41.29 SS G_CDS: -1.36 Total: 39.93 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: 5.13 Total: -5.16 kcal Atomic # 7 Polarization: -104.33 SS G_CDS: -6.17 Total: -110.51 kcal Atomic # 8 Polarization: -57.50 SS G_CDS: -0.05 Total: -57.55 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.72 kcal Total: -90.15 -0.42 -90.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193929429.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.648 kcal (2) G-P(sol) polarization free energy of solvation -90.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds