Wall clock time and date at job start Tue Mar 31 2020 11:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47114 * 2 1 4 4 H 1.09001 * 109.47364 * 55.00148 * 3 2 1 5 5 C 1.50698 * 109.47287 * 174.99597 * 3 2 1 6 6 H 1.08004 * 119.99784 * 120.27123 * 5 3 2 7 7 C 1.37876 * 120.00463 * 300.00393 * 5 3 2 8 8 N 1.31523 * 119.99683 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00524 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.46955 * 89.99644 * 9 7 5 11 11 H 1.48495 * 109.46917 * 210.00010 * 9 7 5 12 12 H 1.48499 * 109.46939 * 329.99681 * 9 7 5 13 13 N 1.46497 * 109.47261 * 294.99982 * 3 2 1 14 14 C 1.34774 * 120.00421 * 84.99785 * 13 3 2 15 15 O 1.21593 * 119.99652 * 0.02562 * 14 13 3 16 16 N 1.34770 * 120.00270 * 179.97438 * 14 13 3 17 17 C 1.40116 * 119.99989 * 175.37301 * 16 14 13 18 18 C 1.38874 * 120.16164 * 215.08384 * 17 16 14 19 19 C 1.37867 * 120.30149 * 179.97438 * 18 17 16 20 20 C 1.39375 * 120.22655 * 359.97438 * 19 18 17 21 21 C 1.38911 * 119.06039 * 0.02562 * 20 19 18 22 22 C 1.37641 * 120.86827 * 359.73373 * 21 20 19 23 23 C 1.51145 * 106.35798 * 179.97438 * 21 20 19 24 24 C 1.51380 * 104.09986 * 359.97438 * 23 21 20 25 25 O 1.21291 * 126.43239 * 180.02562 * 24 23 21 26 26 N 1.34368 * 107.13256 * 0.02562 * 24 23 21 27 27 C 1.46494 * 123.88851 * 179.97438 * 26 24 23 28 28 H 1.08997 * 109.47525 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47353 * 300.00334 * 1 2 3 30 30 H 1.09001 * 109.47016 * 60.00106 * 1 2 3 31 31 H 1.09000 * 109.47353 * 239.99666 * 2 1 3 32 32 H 1.09001 * 109.47016 * 119.99894 * 2 1 3 33 33 H 0.97001 * 119.99636 * 180.02562 * 8 7 5 34 34 H 0.96998 * 119.99599 * 265.00070 * 13 3 2 35 35 H 0.97003 * 120.00175 * 355.37975 * 16 14 13 36 36 H 1.08006 * 119.84951 * 0.02562 * 18 17 16 37 37 H 1.08001 * 119.88806 * 180.02562 * 19 18 17 38 38 H 1.07997 * 120.06676 * 180.26061 * 22 21 20 39 39 H 1.08998 * 110.50250 * 241.34396 * 23 21 20 40 40 H 1.09007 * 110.50641 * 118.65201 * 23 21 20 41 41 H 1.09005 * 109.47254 * 270.00018 * 27 26 24 42 42 H 1.08997 * 109.47184 * 30.00428 * 27 26 24 43 43 H 1.09004 * 109.46940 * 149.99879 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5418 1.4443 0.1239 6 1 4.1470 1.8928 -0.6501 7 6 4.1432 0.8784 1.2280 8 7 3.4061 0.3374 2.1734 9 14 6.0049 0.8801 1.3813 10 1 6.4426 2.1129 2.0838 11 1 6.4389 -0.3110 2.1547 12 1 6.6131 0.8395 0.0272 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3670 15 8 -0.3413 2.6326 -0.4318 16 7 0.0788 3.2674 -2.5184 17 6 -1.2195 3.7712 -2.6729 18 6 -1.8458 3.7181 -3.9112 19 6 -3.1234 4.2124 -4.0663 20 6 -3.7969 4.7692 -2.9805 21 6 -3.1623 4.8180 -1.7457 22 6 -1.8888 4.3209 -1.5862 23 6 -4.1375 5.4680 -0.7913 24 6 -5.3522 5.7589 -1.6465 25 8 -6.3826 6.2833 -1.2798 26 7 -5.0747 5.3270 -2.8883 27 6 -6.0048 5.4289 -4.0155 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8292 -0.0604 2.9503 34 1 2.2719 2.1231 -1.9977 35 1 0.7212 3.3525 -3.2403 36 1 -1.3300 3.2868 -4.7565 37 1 -3.6043 4.1674 -5.0322 38 1 -1.4092 4.3616 -0.6194 39 1 -3.7218 6.3931 -0.3920 40 1 -4.3944 4.7835 0.0172 41 1 -6.6213 4.5311 -4.0603 42 1 -6.6434 6.3020 -3.8818 43 1 -5.4415 5.5296 -4.9433 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194052012.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:35 Heat of formation + Delta-G solvation = -21.660989 kcal Electronic energy + Delta-G solvation = -26127.534881 eV Core-core repulsion = 22366.135526 eV Total energy + Delta-G solvation = -3761.399354 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.59315 -39.98992 -38.31565 -36.43948 -35.09113 -33.93256 -32.97463 -32.38496 -30.90391 -29.48675 -27.94578 -26.96286 -26.49623 -23.34496 -22.62376 -21.83735 -20.67651 -20.36866 -19.55752 -18.28258 -17.53760 -17.21906 -16.49196 -16.42090 -16.01548 -15.16002 -15.06277 -14.61617 -14.30956 -14.08755 -13.94237 -13.88990 -13.37183 -13.18120 -13.13856 -12.94382 -12.68143 -12.62035 -12.45253 -12.09817 -11.60102 -11.29435 -11.22557 -10.99630 -10.90752 -10.73464 -10.34222 -10.27086 -10.21907 -9.69531 -9.45978 -9.32147 -9.08504 -8.85618 -8.54018 -7.95511 -7.48129 -6.16268 -4.25791 1.09006 1.29310 2.31748 2.57597 3.10507 3.21930 3.29317 3.30910 3.55879 3.91693 4.04924 4.26880 4.31539 4.70018 4.80513 4.93126 4.99077 5.04565 5.15703 5.19527 5.26670 5.29489 5.33282 5.59283 5.88085 5.91442 5.95940 6.33440 6.38616 6.45305 6.45895 6.53611 6.64581 6.78245 6.97916 7.06681 7.15353 7.31380 7.34249 7.41570 7.60841 7.74333 7.82653 7.93871 8.15081 8.68882 8.79862 9.19713 9.42596 10.89029 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.027672 B = 0.002651 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.626702 B =10558.677335 C =10863.051981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.128 4.128 3 C 0.287 3.713 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.718 5.718 14 C 0.692 3.308 15 O -0.576 6.576 16 N -0.696 5.696 17 C 0.166 3.834 18 C -0.122 4.122 19 C -0.116 4.116 20 C 0.109 3.891 21 C -0.120 4.120 22 C -0.068 4.068 23 C -0.113 4.113 24 C 0.526 3.474 25 O -0.513 6.513 26 N -0.552 5.552 27 C 0.080 3.920 28 H 0.021 0.979 29 H 0.050 0.950 30 H 0.038 0.962 31 H 0.030 0.970 32 H 0.099 0.901 33 H 0.265 0.735 34 H 0.386 0.614 35 H 0.403 0.597 36 H 0.132 0.868 37 H 0.125 0.875 38 H 0.153 0.847 39 H 0.123 0.877 40 H 0.125 0.875 41 H 0.064 0.936 42 H 0.081 0.919 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.086 7.709 -14.155 19.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.167 4.167 3 C 0.185 3.815 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.369 5.369 14 C 0.393 3.607 15 O -0.454 6.454 16 N -0.344 5.344 17 C 0.069 3.931 18 C -0.143 4.143 19 C -0.137 4.137 20 C 0.014 3.986 21 C -0.123 4.123 22 C -0.089 4.089 23 C -0.152 4.152 24 C 0.316 3.684 25 O -0.388 6.388 26 N -0.275 5.275 27 C -0.062 4.062 28 H 0.040 0.960 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.117 0.883 33 H 0.075 0.925 34 H 0.218 0.782 35 H 0.238 0.762 36 H 0.149 0.851 37 H 0.143 0.857 38 H 0.170 0.830 39 H 0.141 0.859 40 H 0.143 0.857 41 H 0.083 0.917 42 H 0.099 0.901 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.373 7.819 -12.876 19.494 hybrid contribution 1.587 -0.148 -0.817 1.791 sum -10.786 7.671 -13.693 19.044 Atomic orbital electron populations 1.21813 0.98237 0.97928 1.01284 1.21954 0.92707 0.99847 1.02234 1.18724 0.94000 0.88903 0.79887 0.93172 1.21213 0.90654 1.39051 1.06443 0.92103 1.24876 0.98606 0.94784 0.95367 1.69897 1.35151 1.37510 1.09280 0.86450 0.84804 0.77673 0.78179 1.20568 1.21062 1.19886 1.45843 1.13238 1.58421 1.19348 1.16118 0.83689 0.78686 0.82231 1.90886 1.51780 1.64752 1.37938 1.42822 1.11724 1.61429 1.18404 1.17314 0.85510 0.96485 0.93771 1.20575 0.94279 1.02447 0.97043 1.19983 0.94574 1.02272 0.96870 1.18107 0.85022 0.99717 0.95773 1.19619 0.95381 1.03627 0.93686 1.20516 0.92808 0.95155 1.00454 1.21048 0.92224 1.03509 0.98425 1.20674 0.88579 0.76885 0.82296 1.90764 1.28706 1.43029 1.76316 1.45692 1.14093 1.56805 1.10950 1.21776 0.93080 1.03085 0.88254 0.96022 0.93128 0.94278 0.95099 0.88277 0.92504 0.78205 0.76202 0.85056 0.85712 0.82982 0.85916 0.85718 0.91726 0.90065 0.90375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.51 37.16 0.32 -2.63 16 2 C -0.13 -3.01 5.45 -26.74 -0.15 -3.16 16 3 C 0.29 6.84 2.24 -69.09 -0.15 6.69 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.00 16 5 C -0.54 -13.51 8.73 -34.44 -0.30 -13.81 16 6 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 7 C 0.07 1.74 5.29 -17.82 -0.09 1.65 16 8 N -0.88 -24.00 11.30 55.43 0.63 -23.37 16 9 Si 0.90 20.01 29.54 -169.99 -5.02 14.99 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 13 N -0.72 -13.71 5.03 -59.82 -0.30 -14.01 16 14 C 0.69 12.62 6.98 -86.93 -0.61 12.02 16 15 O -0.58 -12.37 10.91 5.28 0.06 -12.31 16 16 N -0.70 -9.38 5.35 -14.16 -0.08 -9.46 16 17 C 0.17 2.18 6.32 -83.57 -0.53 1.65 16 18 C -0.12 -1.25 9.94 -39.48 -0.39 -1.64 16 19 C -0.12 -1.12 9.73 -39.29 -0.38 -1.51 16 20 C 0.11 1.24 6.70 -83.59 -0.56 0.68 16 21 C -0.12 -1.50 6.34 -104.37 -0.66 -2.16 16 22 C -0.07 -0.97 8.69 -39.53 -0.34 -1.31 16 23 C -0.11 -1.26 6.87 -28.48 -0.20 -1.45 16 24 C 0.53 6.66 8.23 -10.83 -0.09 6.57 16 25 O -0.51 -7.89 17.67 5.55 0.10 -7.79 16 26 N -0.55 -6.10 3.14 -120.56 -0.38 -6.47 16 27 C 0.08 0.62 10.77 59.84 0.64 1.27 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 1.18 7.84 -51.93 -0.41 0.77 16 30 H 0.04 0.83 5.64 -51.93 -0.29 0.54 16 31 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.10 2.59 5.95 -51.93 -0.31 2.28 16 33 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 34 H 0.39 6.27 8.56 -40.82 -0.35 5.92 16 35 H 0.40 4.05 8.84 -40.82 -0.36 3.69 16 36 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 37 H 0.12 0.88 7.69 -52.49 -0.40 0.48 16 38 H 0.15 2.50 6.22 -52.49 -0.33 2.17 16 39 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.13 1.30 8.14 -51.92 -0.42 0.88 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.08 0.63 7.95 -51.93 -0.41 0.22 16 43 H 0.08 0.44 7.61 -51.93 -0.40 0.04 16 LS Contribution 353.75 15.07 5.33 5.33 Total: -1.00 -31.45 353.75 -8.89 -40.33 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -5.73 Total: 9.93 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: -3.49 Total: 2.84 kcal Atomic # 7 Polarization: -53.19 SS G_CDS: -0.13 Total: -53.31 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: 0.16 Total: -20.10 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.45 -8.89 -40.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194052012.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.672 kcal (2) G-P(sol) polarization free energy of solvation -31.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds