Wall clock time and date at job start Tue Mar 31 2020 11:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47114 * 2 1 4 4 H 1.09001 * 109.47364 * 55.00148 * 3 2 1 5 5 C 1.50698 * 109.47287 * 174.99597 * 3 2 1 6 6 H 1.08004 * 119.99784 * 120.27123 * 5 3 2 7 7 C 1.37876 * 120.00463 * 300.00393 * 5 3 2 8 8 N 1.31523 * 119.99683 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00524 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.46955 * 89.99644 * 9 7 5 11 11 H 1.48495 * 109.46917 * 210.00010 * 9 7 5 12 12 H 1.48499 * 109.46939 * 329.99681 * 9 7 5 13 13 N 1.46497 * 109.47261 * 294.99982 * 3 2 1 14 14 C 1.34774 * 120.00421 * 84.99785 * 13 3 2 15 15 O 1.21593 * 119.99652 * 0.02562 * 14 13 3 16 16 N 1.34770 * 120.00270 * 179.97438 * 14 13 3 17 17 C 1.40116 * 119.99989 * 175.37301 * 16 14 13 18 18 C 1.38874 * 120.16164 * 215.08384 * 17 16 14 19 19 C 1.37867 * 120.30149 * 179.97438 * 18 17 16 20 20 C 1.39375 * 120.22655 * 359.97438 * 19 18 17 21 21 C 1.38911 * 119.06039 * 0.02562 * 20 19 18 22 22 C 1.37641 * 120.86827 * 359.73373 * 21 20 19 23 23 C 1.51145 * 106.35798 * 179.97438 * 21 20 19 24 24 C 1.51380 * 104.09986 * 359.97438 * 23 21 20 25 25 O 1.21291 * 126.43239 * 180.02562 * 24 23 21 26 26 N 1.34368 * 107.13256 * 0.02562 * 24 23 21 27 27 C 1.46494 * 123.88851 * 179.97438 * 26 24 23 28 28 H 1.08997 * 109.47525 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47353 * 300.00334 * 1 2 3 30 30 H 1.09001 * 109.47016 * 60.00106 * 1 2 3 31 31 H 1.09000 * 109.47353 * 239.99666 * 2 1 3 32 32 H 1.09001 * 109.47016 * 119.99894 * 2 1 3 33 33 H 0.97001 * 119.99636 * 180.02562 * 8 7 5 34 34 H 0.96998 * 119.99599 * 265.00070 * 13 3 2 35 35 H 0.97003 * 120.00175 * 355.37975 * 16 14 13 36 36 H 1.08006 * 119.84951 * 0.02562 * 18 17 16 37 37 H 1.08001 * 119.88806 * 180.02562 * 19 18 17 38 38 H 1.07997 * 120.06676 * 180.26061 * 22 21 20 39 39 H 1.08998 * 110.50250 * 241.34396 * 23 21 20 40 40 H 1.09007 * 110.50641 * 118.65201 * 23 21 20 41 41 H 1.09005 * 109.47254 * 270.00018 * 27 26 24 42 42 H 1.08997 * 109.47184 * 30.00428 * 27 26 24 43 43 H 1.09004 * 109.46940 * 149.99879 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5418 1.4443 0.1239 6 1 4.1470 1.8928 -0.6501 7 6 4.1432 0.8784 1.2280 8 7 3.4061 0.3374 2.1734 9 14 6.0049 0.8801 1.3813 10 1 6.4426 2.1129 2.0838 11 1 6.4389 -0.3110 2.1547 12 1 6.6131 0.8395 0.0272 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3670 15 8 -0.3413 2.6326 -0.4318 16 7 0.0788 3.2674 -2.5184 17 6 -1.2195 3.7712 -2.6729 18 6 -1.8458 3.7181 -3.9112 19 6 -3.1234 4.2124 -4.0663 20 6 -3.7969 4.7692 -2.9805 21 6 -3.1623 4.8180 -1.7457 22 6 -1.8888 4.3209 -1.5862 23 6 -4.1375 5.4680 -0.7913 24 6 -5.3522 5.7589 -1.6465 25 8 -6.3826 6.2833 -1.2798 26 7 -5.0747 5.3270 -2.8883 27 6 -6.0048 5.4289 -4.0155 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8292 -0.0604 2.9503 34 1 2.2719 2.1231 -1.9977 35 1 0.7212 3.3525 -3.2403 36 1 -1.3300 3.2868 -4.7565 37 1 -3.6043 4.1674 -5.0322 38 1 -1.4092 4.3616 -0.6194 39 1 -3.7218 6.3931 -0.3920 40 1 -4.3944 4.7835 0.0172 41 1 -6.6213 4.5311 -4.0603 42 1 -6.6434 6.3020 -3.8818 43 1 -5.4415 5.5296 -4.9433 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194052012.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:34 Heat of formation + Delta-G solvation = -42.284056 kcal Electronic energy + Delta-G solvation = -26128.429164 eV Core-core repulsion = 22366.135526 eV Total energy + Delta-G solvation = -3762.293638 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.52815 -41.31832 -39.43408 -37.67379 -36.63648 -35.11715 -34.22348 -33.85671 -32.60109 -30.48863 -29.16162 -28.44478 -27.39788 -25.07711 -23.85413 -22.83007 -22.07527 -21.31137 -21.26371 -19.73428 -18.70216 -18.16897 -17.72732 -17.51125 -17.35570 -16.85284 -16.48893 -15.94758 -15.58447 -15.28544 -14.98352 -14.75320 -14.60055 -14.52874 -14.29251 -14.05205 -13.96976 -13.70809 -13.48754 -13.26545 -13.15256 -13.11517 -12.83719 -12.67134 -12.24213 -12.09545 -12.01608 -11.78559 -11.52038 -11.26997 -11.04038 -10.92059 -10.50514 -10.41470 -9.79861 -9.60790 -8.49372 -8.13152 -6.29846 0.13182 0.39427 1.33612 1.47283 1.47714 1.57805 1.73506 1.87443 2.29069 2.44859 2.85185 3.10069 3.16804 3.36856 3.61901 3.87290 4.08627 4.24696 4.38250 4.40113 4.44403 4.50516 4.54138 4.62044 4.67149 4.76498 4.79817 4.95800 5.02490 5.05809 5.11733 5.27818 5.40813 5.47678 5.50235 5.59781 5.62477 5.65948 5.80104 5.82773 5.92395 6.14038 6.21419 6.35613 6.79016 6.80706 7.33513 7.39149 7.80051 8.92050 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.027672 B = 0.002651 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.626702 B =10558.677335 C =10863.051981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.121 4.121 3 C 0.297 3.703 4 H 0.000 1.000 5 C -0.545 4.545 6 H 0.073 0.927 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.968 3.032 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.260 1.260 13 N -0.715 5.715 14 C 0.691 3.309 15 O -0.613 6.613 16 N -0.675 5.675 17 C 0.143 3.857 18 C -0.105 4.105 19 C -0.101 4.101 20 C 0.107 3.893 21 C -0.132 4.132 22 C -0.090 4.090 23 C -0.114 4.114 24 C 0.522 3.478 25 O -0.546 6.546 26 N -0.549 5.549 27 C 0.072 3.928 28 H 0.040 0.960 29 H 0.024 0.976 30 H 0.043 0.957 31 H 0.041 0.959 32 H 0.070 0.930 33 H 0.264 0.736 34 H 0.402 0.598 35 H 0.422 0.578 36 H 0.168 0.832 37 H 0.165 0.835 38 H 0.119 0.881 39 H 0.135 0.865 40 H 0.126 0.874 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.762 7.706 -17.780 22.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.160 4.160 3 C 0.194 3.806 4 H 0.018 0.982 5 C -0.584 4.584 6 H 0.091 0.909 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.793 3.207 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.184 1.184 13 N -0.368 5.368 14 C 0.392 3.608 15 O -0.493 6.493 16 N -0.325 5.325 17 C 0.047 3.953 18 C -0.126 4.126 19 C -0.122 4.122 20 C 0.011 3.989 21 C -0.135 4.135 22 C -0.111 4.111 23 C -0.153 4.153 24 C 0.313 3.687 25 O -0.425 6.425 26 N -0.271 5.271 27 C -0.069 4.069 28 H 0.059 0.941 29 H 0.044 0.956 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.237 0.763 35 H 0.261 0.739 36 H 0.185 0.815 37 H 0.182 0.818 38 H 0.137 0.863 39 H 0.153 0.847 40 H 0.144 0.856 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -12.043 7.839 -16.604 21.958 hybrid contribution 1.392 -0.091 0.257 1.418 sum -10.651 7.749 -16.346 20.993 Atomic orbital electron populations 1.21631 0.97039 0.98765 1.00237 1.21797 0.93645 0.99359 1.01210 1.18233 0.93305 0.88762 0.80343 0.98227 1.21578 0.91454 1.38607 1.06715 0.90904 1.25735 1.03071 0.94509 0.95114 1.70054 1.36975 1.38468 1.09833 0.85405 0.79410 0.77278 0.78592 1.20613 1.21199 1.18365 1.45419 1.14189 1.58730 1.18438 1.16205 0.82908 0.78626 0.83062 1.90881 1.52725 1.65920 1.39734 1.42439 1.12587 1.60217 1.17249 1.17549 0.85352 0.97539 0.94828 1.20909 0.94238 1.00945 0.96479 1.20417 0.94022 1.00030 0.97770 1.18319 0.85023 0.99703 0.95856 1.19630 0.95044 1.03928 0.94920 1.20315 0.93807 0.97262 0.99763 1.21083 0.91788 1.04084 0.98373 1.20786 0.88263 0.76578 0.83122 1.90740 1.29919 1.44792 1.77051 1.45782 1.14334 1.55770 1.11217 1.22063 0.93108 1.03515 0.88189 0.94072 0.95650 0.93785 0.94039 0.91143 0.92675 0.76313 0.73937 0.81494 0.81781 0.86323 0.84745 0.85614 0.90734 0.90360 0.87365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.28 8.51 71.98 0.61 -4.67 16 2 C -0.12 -5.78 5.45 30.59 0.17 -5.61 16 3 C 0.30 14.57 2.24 44.24 0.10 14.67 16 4 H 0.00 -0.01 7.58 -2.39 -0.02 -0.03 16 5 C -0.55 -27.65 8.73 25.60 0.22 -27.43 16 6 H 0.07 3.43 7.74 -2.91 -0.02 3.41 16 7 C 0.02 0.83 5.29 84.65 0.45 1.28 16 8 N -0.91 -51.29 11.30 21.45 0.24 -51.05 16 9 Si 0.97 40.96 29.54 68.60 2.03 42.99 16 10 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 11 H -0.29 -12.08 7.11 99.48 0.71 -11.37 16 12 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 13 N -0.72 -27.25 5.03 -461.43 -2.32 -29.57 16 14 C 0.69 25.32 6.98 179.06 1.25 26.57 16 15 O -0.61 -27.42 10.91 -4.01 -0.04 -27.46 16 16 N -0.68 -17.25 5.35 -316.97 -1.70 -18.95 16 17 C 0.14 3.53 6.32 38.14 0.24 3.77 16 18 C -0.10 -1.72 9.94 22.33 0.22 -1.50 16 19 C -0.10 -1.53 9.73 22.46 0.22 -1.31 16 20 C 0.11 2.18 6.70 38.32 0.26 2.43 16 21 C -0.13 -3.27 6.34 -19.70 -0.12 -3.39 16 22 C -0.09 -2.61 8.69 22.30 0.19 -2.41 16 23 C -0.11 -2.61 6.87 29.46 0.20 -2.41 16 24 C 0.52 13.09 8.23 87.94 0.72 13.81 16 25 O -0.55 -16.98 17.67 -3.06 -0.05 -17.03 16 26 N -0.55 -11.08 3.14 -653.96 -2.05 -13.14 16 27 C 0.07 0.91 10.77 127.77 1.38 2.29 16 28 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.02 1.21 7.84 -2.39 -0.02 1.19 16 30 H 0.04 1.88 5.64 -2.39 -0.01 1.87 16 31 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.07 3.80 5.95 -2.39 -0.01 3.79 16 33 H 0.26 14.10 8.31 -92.71 -0.77 13.33 16 34 H 0.40 12.52 8.56 -92.71 -0.79 11.73 16 35 H 0.42 7.36 8.84 -92.71 -0.82 6.54 16 36 H 0.17 1.60 8.06 -2.91 -0.02 1.57 16 37 H 0.16 1.25 7.69 -2.91 -0.02 1.22 16 38 H 0.12 4.21 6.22 -2.91 -0.02 4.19 16 39 H 0.13 2.66 8.14 -2.39 -0.02 2.64 16 40 H 0.13 2.80 8.14 -2.38 -0.02 2.78 16 41 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 42 H 0.08 1.08 7.95 -2.39 -0.02 1.06 16 43 H 0.11 0.72 7.61 -2.39 -0.02 0.70 16 Total: -1.00 -71.61 353.75 1.66 -69.95 By element: Atomic # 1 Polarization: 28.72 SS G_CDS: -0.55 Total: 28.17 kcal Atomic # 6 Polarization: 9.98 SS G_CDS: 6.11 Total: 16.09 kcal Atomic # 7 Polarization: -106.87 SS G_CDS: -5.83 Total: -112.69 kcal Atomic # 8 Polarization: -44.40 SS G_CDS: -0.10 Total: -44.50 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.99 kcal Total: -71.61 1.66 -69.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194052012.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.662 kcal (2) G-P(sol) polarization free energy of solvation -71.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds