Wall clock time and date at job start Tue Mar 31 2020 11:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47012 * 2 1 4 4 N 1.46499 * 109.47040 * 119.99634 * 2 1 3 5 5 C 1.35037 * 124.88746 * 274.71874 * 4 2 1 6 6 C 1.35360 * 107.22737 * 179.89837 * 5 4 2 7 7 C 1.41502 * 105.50533 * 0.35058 * 6 5 4 8 8 C 1.47715 * 126.51677 * 179.79428 * 7 6 5 9 9 O 1.21568 * 119.99869 * 353.62954 * 8 7 6 10 10 N 1.34775 * 119.99562 * 173.62202 * 8 7 6 11 11 C 1.46496 * 120.00357 * 3.93897 * 10 8 7 12 12 C 1.50697 * 109.47483 * 83.33539 * 11 10 8 13 13 H 1.08003 * 120.00034 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00349 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99878 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00198 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46937 * 90.00510 * 16 14 12 18 18 H 1.48502 * 109.47264 * 210.00099 * 16 14 12 19 19 H 1.48495 * 109.47256 * 330.00212 * 16 14 12 20 20 C 1.46507 * 119.99797 * 183.93117 * 10 8 7 21 21 C 1.50697 * 109.46930 * 90.00421 * 20 10 8 22 22 C 1.34509 * 125.79185 * 89.71634 * 21 20 10 23 23 C 1.41383 * 106.84570 * 179.88905 * 22 21 20 24 24 C 1.34515 * 106.83695 * 0.37292 * 23 22 21 25 25 O 1.34301 * 125.78840 * 270.02639 * 21 20 10 26 26 N 1.28467 * 124.88258 * 95.02876 * 4 2 1 27 27 H 1.08995 * 109.46793 * 60.00236 * 1 2 3 28 28 H 1.09002 * 109.46657 * 300.00102 * 1 2 3 29 29 H 1.09003 * 109.46506 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47360 * 239.99805 * 2 1 3 31 31 H 1.08998 * 109.47217 * 59.99718 * 3 2 1 32 32 H 1.09002 * 109.46731 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.46624 * 299.99780 * 3 2 1 34 34 H 1.07998 * 126.38248 * 0.04465 * 5 4 2 35 35 H 1.08005 * 127.24549 * 180.12786 * 6 5 4 36 36 H 1.08999 * 109.47464 * 203.33796 * 11 10 8 37 37 H 1.09002 * 109.46917 * 323.33340 * 11 10 8 38 38 H 0.96996 * 119.99895 * 179.97438 * 15 14 12 39 39 H 1.08992 * 109.47074 * 210.00622 * 20 10 8 40 40 H 1.08997 * 109.46719 * 330.00500 * 20 10 8 41 41 H 1.08002 * 126.57937 * 0.02562 * 22 21 20 42 42 H 1.07991 * 126.58023 * 180.16268 * 23 22 21 43 43 H 1.07998 * 125.78948 * 179.74770 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.1899 -0.1137 2.4051 6 6 2.6495 -1.0710 3.2445 7 6 2.7480 -2.2454 2.4612 8 6 3.2086 -3.5718 2.9199 9 8 3.6588 -3.7046 4.0413 10 7 3.1296 -4.6348 2.0951 11 6 2.6681 -4.4592 0.7159 12 6 3.8205 -4.0131 -0.1466 13 1 4.7989 -3.8739 0.2892 14 6 3.6260 -3.7827 -1.4920 15 7 2.4346 -3.9517 -2.0225 16 14 5.0545 -3.2291 -2.5609 17 1 5.7458 -4.4193 -3.1184 18 1 4.5437 -2.3875 -3.6726 19 1 6.0094 -2.4406 -1.7415 20 6 3.5054 -5.9660 2.5779 21 6 2.2957 -6.6483 3.1626 22 6 1.4258 -7.4214 2.4882 23 6 0.4540 -7.8535 3.4198 24 6 0.7836 -7.3118 4.6061 25 8 1.8999 -6.5828 4.4443 26 7 2.3503 -1.9306 1.2446 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.6767 1.9564 0.8899 32 1 3.1301 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.9943 0.9184 2.6560 35 1 2.8935 -0.9607 4.2908 36 1 2.2778 -5.4049 0.3401 37 1 1.8813 -3.7053 0.6893 38 1 2.2977 -3.7892 -2.9689 39 1 3.8908 -6.5580 1.7479 40 1 4.2747 -5.8707 3.3442 41 1 1.4637 -7.6670 1.4372 42 1 -0.3924 -8.4927 3.2171 43 1 0.2421 -7.4409 5.5316 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264976116.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:56 Heat of formation + Delta-G solvation = 74.687003 kcal Electronic energy + Delta-G solvation = -27325.282700 eV Core-core repulsion = 23568.061308 eV Total energy + Delta-G solvation = -3757.221392 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.13055 -42.01346 -38.64275 -35.47661 -35.06421 -32.71046 -32.39703 -30.72017 -30.28937 -29.30404 -27.29592 -27.14633 -25.64945 -23.45576 -22.65114 -21.67752 -21.28107 -20.12626 -19.65489 -18.52186 -17.04182 -16.92363 -16.33279 -15.95173 -15.81640 -15.28365 -14.98075 -14.45781 -14.38294 -14.25381 -13.68595 -13.31190 -13.10963 -12.71292 -12.57179 -12.41326 -12.37899 -12.30703 -12.23726 -12.08674 -12.02462 -11.50347 -11.29367 -11.21717 -11.01395 -10.88385 -10.73888 -10.14819 -9.71062 -9.53159 -9.48783 -9.25775 -8.59696 -8.44779 -8.33777 -8.10506 -7.69701 -6.01245 -4.02134 2.08294 2.44881 2.71534 2.94015 3.02715 3.26319 3.33396 3.38931 3.43457 4.10532 4.28646 4.45513 4.64252 4.94031 5.12814 5.16011 5.18082 5.30181 5.33875 5.40152 5.43705 5.45821 5.58948 5.65137 5.74780 5.87491 5.95706 6.08287 6.10560 6.16982 6.21074 6.28190 6.31709 6.35667 6.48235 6.80302 6.89497 6.99156 7.32498 7.53237 7.58058 7.80262 7.92050 8.27614 8.34321 8.67674 9.00274 9.10750 9.59765 11.06666 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010624 B = 0.005537 C = 0.004350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2634.906869 B = 5055.924195 C = 6435.486067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.142 3.858 3 C -0.161 4.161 4 N -0.284 5.284 5 C -0.040 4.040 6 C -0.188 4.188 7 C -0.024 4.024 8 C 0.605 3.395 9 O -0.564 6.564 10 N -0.584 5.584 11 C 0.232 3.768 12 C -0.507 4.507 13 H 0.053 0.947 14 C 0.070 3.930 15 N -0.891 5.891 16 Si 0.884 3.116 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.277 1.277 20 C 0.195 3.805 21 C -0.014 4.014 22 C -0.202 4.202 23 C -0.217 4.217 24 C -0.053 4.053 25 O -0.167 6.167 26 N -0.181 5.181 27 H 0.075 0.925 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.115 0.885 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.168 0.832 35 H 0.151 0.849 36 H 0.030 0.970 37 H 0.071 0.929 38 H 0.259 0.741 39 H 0.112 0.888 40 H 0.091 0.909 41 H 0.149 0.851 42 H 0.143 0.857 43 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.411 4.662 5.414 8.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.041 3.959 3 C -0.219 4.219 4 N -0.073 5.073 5 C -0.181 4.181 6 C -0.217 4.217 7 C -0.183 4.183 8 C 0.393 3.607 9 O -0.442 6.442 10 N -0.313 5.313 11 C 0.113 3.887 12 C -0.546 4.546 13 H 0.072 0.928 14 C -0.132 4.132 15 N -0.531 5.531 16 Si 0.712 3.288 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.202 1.202 20 C 0.071 3.929 21 C -0.066 4.066 22 C -0.222 4.222 23 C -0.236 4.236 24 C -0.122 4.122 25 O -0.062 6.062 26 N -0.015 5.015 27 H 0.094 0.906 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.133 0.867 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.185 0.815 35 H 0.169 0.831 36 H 0.048 0.952 37 H 0.088 0.912 38 H 0.069 0.931 39 H 0.130 0.870 40 H 0.110 0.890 41 H 0.166 0.834 42 H 0.161 0.839 43 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -5.323 4.400 4.846 8.437 hybrid contribution 0.578 0.566 -0.199 0.833 sum -4.745 4.966 4.647 8.293 Atomic orbital electron populations 1.22169 0.93406 1.03781 1.02477 1.21468 0.95118 0.92759 0.86531 1.22166 1.02465 0.94110 1.03206 1.46063 1.45466 1.06924 1.08873 1.22578 1.08897 1.00247 0.86404 1.21612 1.07753 0.91597 1.00700 1.21815 1.09663 0.95758 0.91105 1.17008 0.77546 0.82432 0.83750 1.90681 1.47991 1.85147 1.20418 1.48204 1.63842 1.04580 1.14724 1.19844 0.96587 0.98343 0.73940 1.21311 0.95326 1.44936 0.93008 0.92826 1.24745 0.95276 0.95600 0.97530 1.69940 1.20942 1.49780 1.12411 0.86730 0.83053 0.78804 0.80204 1.20729 1.21330 1.20165 1.19728 0.90227 0.83912 0.99027 1.23255 1.00529 1.01344 0.81440 1.21661 0.96476 1.03180 1.00917 1.21777 1.02532 1.05981 0.93290 1.23947 0.89707 0.98082 1.00422 1.84104 1.36446 1.56550 1.29126 1.74554 1.11728 0.95185 1.20051 0.90596 0.92254 0.91058 0.86696 0.91675 0.91421 0.90166 0.81472 0.83093 0.95201 0.91190 0.93140 0.86984 0.89049 0.83368 0.83924 0.78743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 9.52 37.16 0.35 -1.60 16 2 C 0.14 2.04 3.80 -67.93 -0.26 1.78 16 3 C -0.16 -1.68 8.80 37.16 0.33 -1.36 16 4 N -0.28 -5.04 3.22 -54.83 -0.18 -5.21 16 5 C -0.04 -0.63 10.54 -17.17 -0.18 -0.81 16 6 C -0.19 -3.48 10.81 -39.37 -0.43 -3.91 16 7 C -0.02 -0.53 6.80 -82.76 -0.56 -1.09 16 8 C 0.61 14.32 7.61 -12.39 -0.09 14.23 16 9 O -0.56 -13.91 16.49 5.31 0.09 -13.82 16 10 N -0.58 -13.32 2.46 -177.61 -0.44 -13.75 16 11 C 0.23 5.77 4.77 -5.20 -0.02 5.75 16 12 C -0.51 -13.44 8.40 -34.44 -0.29 -13.73 16 13 H 0.05 1.48 7.81 -52.48 -0.41 1.07 16 14 C 0.07 1.85 5.46 -17.82 -0.10 1.76 16 15 N -0.89 -24.25 13.29 55.43 0.74 -23.51 16 16 Si 0.88 20.83 29.54 -169.99 -5.02 15.81 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 18 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 C 0.19 3.84 5.94 -5.19 -0.03 3.80 16 21 C -0.01 -0.26 6.90 -35.63 -0.25 -0.51 16 22 C -0.20 -3.53 10.81 -39.70 -0.43 -3.96 16 23 C -0.22 -3.28 10.91 -39.70 -0.43 -3.72 16 24 C -0.05 -0.80 12.09 29.42 0.36 -0.44 16 25 O -0.17 -3.14 10.65 5.70 0.06 -3.08 16 26 N -0.18 -3.99 7.80 33.42 0.26 -3.73 16 27 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.12 1.93 8.14 -51.93 -0.42 1.51 16 31 H 0.06 0.57 7.05 -51.93 -0.37 0.20 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.17 1.88 7.16 -52.49 -0.38 1.51 16 35 H 0.15 2.53 8.06 -52.48 -0.42 2.11 16 36 H 0.03 0.77 8.02 -51.93 -0.42 0.35 16 37 H 0.07 1.86 5.38 -51.93 -0.28 1.58 16 38 H 0.26 6.74 8.31 -40.82 -0.34 6.41 16 39 H 0.11 2.02 8.07 -51.93 -0.42 1.60 16 40 H 0.09 1.77 7.37 -51.93 -0.38 1.39 16 41 H 0.15 2.47 8.06 -52.49 -0.42 2.05 16 42 H 0.14 1.75 8.06 -52.49 -0.42 1.33 16 43 H 0.20 2.05 8.06 -52.49 -0.42 1.63 16 LS Contribution 368.16 15.07 5.55 5.55 Total: -1.00 -32.76 368.16 -6.99 -39.75 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -6.01 Total: 5.81 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -2.04 Total: -3.81 kcal Atomic # 7 Polarization: -46.58 SS G_CDS: 0.38 Total: -46.20 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: 0.15 Total: -16.91 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.76 -6.99 -39.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264976116.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.438 kcal (2) G-P(sol) polarization free energy of solvation -32.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds