Wall clock time and date at job start Tue Mar 31 2020 11:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47012 * 2 1 4 4 N 1.46499 * 109.47040 * 119.99634 * 2 1 3 5 5 C 1.35037 * 124.88746 * 274.71874 * 4 2 1 6 6 C 1.35360 * 107.22737 * 179.89837 * 5 4 2 7 7 C 1.41502 * 105.50533 * 0.35058 * 6 5 4 8 8 C 1.47715 * 126.51677 * 179.79428 * 7 6 5 9 9 O 1.21568 * 119.99869 * 353.62954 * 8 7 6 10 10 N 1.34775 * 119.99562 * 173.62202 * 8 7 6 11 11 C 1.46496 * 120.00357 * 3.93897 * 10 8 7 12 12 C 1.50697 * 109.47483 * 83.33539 * 11 10 8 13 13 H 1.08003 * 120.00034 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00349 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99878 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00198 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46937 * 90.00510 * 16 14 12 18 18 H 1.48502 * 109.47264 * 210.00099 * 16 14 12 19 19 H 1.48495 * 109.47256 * 330.00212 * 16 14 12 20 20 C 1.46507 * 119.99797 * 183.93117 * 10 8 7 21 21 C 1.50697 * 109.46930 * 90.00421 * 20 10 8 22 22 C 1.34509 * 125.79185 * 89.71634 * 21 20 10 23 23 C 1.41383 * 106.84570 * 179.88905 * 22 21 20 24 24 C 1.34515 * 106.83695 * 0.37292 * 23 22 21 25 25 O 1.34301 * 125.78840 * 270.02639 * 21 20 10 26 26 N 1.28467 * 124.88258 * 95.02876 * 4 2 1 27 27 H 1.08995 * 109.46793 * 60.00236 * 1 2 3 28 28 H 1.09002 * 109.46657 * 300.00102 * 1 2 3 29 29 H 1.09003 * 109.46506 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47360 * 239.99805 * 2 1 3 31 31 H 1.08998 * 109.47217 * 59.99718 * 3 2 1 32 32 H 1.09002 * 109.46731 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.46624 * 299.99780 * 3 2 1 34 34 H 1.07998 * 126.38248 * 0.04465 * 5 4 2 35 35 H 1.08005 * 127.24549 * 180.12786 * 6 5 4 36 36 H 1.08999 * 109.47464 * 203.33796 * 11 10 8 37 37 H 1.09002 * 109.46917 * 323.33340 * 11 10 8 38 38 H 0.96996 * 119.99895 * 179.97438 * 15 14 12 39 39 H 1.08992 * 109.47074 * 210.00622 * 20 10 8 40 40 H 1.08997 * 109.46719 * 330.00500 * 20 10 8 41 41 H 1.08002 * 126.57937 * 0.02562 * 22 21 20 42 42 H 1.07991 * 126.58023 * 180.16268 * 23 22 21 43 43 H 1.07998 * 125.78948 * 179.74770 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.1899 -0.1137 2.4051 6 6 2.6495 -1.0710 3.2445 7 6 2.7480 -2.2454 2.4612 8 6 3.2086 -3.5718 2.9199 9 8 3.6588 -3.7046 4.0413 10 7 3.1296 -4.6348 2.0951 11 6 2.6681 -4.4592 0.7159 12 6 3.8205 -4.0131 -0.1466 13 1 4.7989 -3.8739 0.2892 14 6 3.6260 -3.7827 -1.4920 15 7 2.4346 -3.9517 -2.0225 16 14 5.0545 -3.2291 -2.5609 17 1 5.7458 -4.4193 -3.1184 18 1 4.5437 -2.3875 -3.6726 19 1 6.0094 -2.4406 -1.7415 20 6 3.5054 -5.9660 2.5779 21 6 2.2957 -6.6483 3.1626 22 6 1.4258 -7.4214 2.4882 23 6 0.4540 -7.8535 3.4198 24 6 0.7836 -7.3118 4.6061 25 8 1.8999 -6.5828 4.4443 26 7 2.3503 -1.9306 1.2446 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.6767 1.9564 0.8899 32 1 3.1301 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.9943 0.9184 2.6560 35 1 2.8935 -0.9607 4.2908 36 1 2.2778 -5.4049 0.3401 37 1 1.8813 -3.7053 0.6893 38 1 2.2977 -3.7892 -2.9689 39 1 3.8908 -6.5580 1.7479 40 1 4.2747 -5.8707 3.3442 41 1 1.4637 -7.6670 1.4372 42 1 -0.3924 -8.4927 3.2171 43 1 0.2421 -7.4409 5.5316 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264976116.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:55 Heat of formation + Delta-G solvation = 55.369388 kcal Electronic energy + Delta-G solvation = -27326.120374 eV Core-core repulsion = 23568.061308 eV Total energy + Delta-G solvation = -3758.059067 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.50934 -43.41652 -40.40868 -36.90235 -36.62954 -34.60139 -33.86350 -32.22632 -31.67109 -30.71741 -29.07057 -28.19634 -27.16948 -25.21761 -24.23026 -23.12298 -22.61244 -21.50129 -20.94668 -20.13809 -18.74840 -18.27239 -18.01644 -17.59635 -17.38152 -16.73972 -16.51771 -16.28053 -15.95766 -15.46670 -15.11606 -14.68412 -14.57340 -14.25287 -13.94312 -13.85825 -13.74596 -13.70978 -13.55341 -13.34743 -13.20335 -13.02320 -12.96551 -12.71653 -12.53560 -12.31801 -12.11570 -12.04802 -11.71194 -11.18430 -11.05980 -10.82574 -10.46120 -9.99873 -9.90299 -9.58561 -9.39383 -8.07745 -6.15167 0.70568 0.83309 1.35898 1.37598 1.39546 1.48302 1.64695 1.75934 2.12508 2.37263 2.53416 2.61371 3.23751 3.50180 3.75105 3.86599 3.95033 4.03935 4.10099 4.14166 4.16031 4.30371 4.43057 4.53731 4.67269 4.73666 4.79295 4.85939 4.87985 4.91540 4.93590 4.96063 5.03019 5.17268 5.19080 5.24868 5.37857 5.52517 5.63049 5.81572 5.85896 6.17615 6.22957 6.24218 6.49486 6.86414 7.13767 7.38998 7.50304 8.99628 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010624 B = 0.005537 C = 0.004350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2634.906869 B = 5055.924195 C = 6435.486067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.131 3.869 3 C -0.152 4.152 4 N -0.282 5.282 5 C -0.009 4.009 6 C -0.206 4.206 7 C -0.061 4.061 8 C 0.595 3.405 9 O -0.585 6.585 10 N -0.587 5.587 11 C 0.254 3.746 12 C -0.513 4.513 13 H 0.035 0.965 14 C 0.036 3.964 15 N -0.912 5.912 16 Si 0.939 3.061 17 H -0.276 1.276 18 H -0.276 1.276 19 H -0.284 1.284 20 C 0.193 3.807 21 C -0.045 4.045 22 C -0.204 4.204 23 C -0.222 4.222 24 C -0.043 4.043 25 O -0.192 6.192 26 N -0.224 5.224 27 H 0.104 0.896 28 H 0.080 0.920 29 H 0.035 0.965 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.055 0.945 33 H 0.106 0.894 34 H 0.223 0.777 35 H 0.163 0.837 36 H 0.014 0.986 37 H 0.056 0.944 38 H 0.262 0.738 39 H 0.120 0.880 40 H 0.087 0.913 41 H 0.149 0.851 42 H 0.175 0.825 43 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.641 6.554 5.516 10.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.031 3.969 3 C -0.210 4.210 4 N -0.072 5.072 5 C -0.151 4.151 6 C -0.235 4.235 7 C -0.219 4.219 8 C 0.384 3.616 9 O -0.466 6.466 10 N -0.316 5.316 11 C 0.133 3.867 12 C -0.552 4.552 13 H 0.053 0.947 14 C -0.164 4.164 15 N -0.551 5.551 16 Si 0.766 3.234 17 H -0.201 1.201 18 H -0.201 1.201 19 H -0.209 1.209 20 C 0.070 3.930 21 C -0.096 4.096 22 C -0.224 4.224 23 C -0.241 4.241 24 C -0.110 4.110 25 O -0.088 6.088 26 N -0.059 5.059 27 H 0.123 0.877 28 H 0.099 0.901 29 H 0.054 0.946 30 H 0.098 0.902 31 H 0.111 0.889 32 H 0.074 0.926 33 H 0.125 0.875 34 H 0.239 0.761 35 H 0.181 0.819 36 H 0.032 0.968 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.138 0.862 40 H 0.105 0.895 41 H 0.167 0.833 42 H 0.193 0.807 43 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -6.554 6.268 4.930 10.322 hybrid contribution 0.874 -0.007 -0.219 0.901 sum -5.680 6.261 4.711 9.678 Atomic orbital electron populations 1.22129 0.91633 1.02241 1.04950 1.21823 0.96534 0.94391 0.84115 1.22171 1.01681 0.91217 1.05906 1.46477 1.44153 1.05989 1.10561 1.23260 1.05565 1.01710 0.84551 1.21892 1.08918 0.91012 1.01656 1.21917 1.11494 0.96172 0.92339 1.17397 0.77301 0.83321 0.83623 1.90632 1.49206 1.85707 1.21073 1.48217 1.63617 1.05802 1.13986 1.19414 0.95734 0.96713 0.74789 1.21299 0.94827 1.45466 0.93637 0.94692 1.25298 0.97323 0.95442 0.98336 1.70021 1.22251 1.50076 1.12801 0.85864 0.80278 0.78505 0.78747 1.20134 1.20114 1.20948 1.19774 0.91054 0.82916 0.99229 1.22995 1.01265 1.03180 0.82174 1.21889 0.96699 1.02482 1.01333 1.22144 1.02923 1.06442 0.92605 1.24909 0.88053 0.95900 1.02183 1.84078 1.38075 1.57700 1.28964 1.74428 1.13354 0.97700 1.20461 0.87740 0.90102 0.94557 0.90206 0.88898 0.92609 0.87550 0.76057 0.81907 0.96842 0.92683 0.92835 0.86229 0.89473 0.83339 0.80728 0.74288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.42 9.52 71.98 0.69 -2.74 16 2 C 0.13 3.59 3.80 44.99 0.17 3.76 16 3 C -0.15 -2.63 8.80 71.98 0.63 -2.00 16 4 N -0.28 -9.83 3.22 -327.38 -1.05 -10.88 16 5 C -0.01 -0.27 10.54 83.54 0.88 0.61 16 6 C -0.21 -7.55 10.81 22.41 0.24 -7.31 16 7 C -0.06 -2.80 6.80 42.46 0.29 -2.51 16 8 C 0.59 29.61 7.61 86.75 0.66 30.27 16 9 O -0.59 -30.25 16.49 -3.93 -0.06 -30.31 16 10 N -0.59 -28.36 2.46 -834.09 -2.05 -30.41 16 11 C 0.25 13.30 4.77 85.63 0.41 13.71 16 12 C -0.51 -28.36 8.40 25.60 0.21 -28.14 16 13 H 0.03 2.02 7.81 -2.91 -0.02 2.00 16 14 C 0.04 1.94 5.46 84.65 0.46 2.40 16 15 N -0.91 -50.59 13.29 21.45 0.28 -50.31 16 16 Si 0.94 43.29 29.54 68.60 2.03 45.31 16 17 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 18 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 19 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 20 C 0.19 8.08 5.94 85.63 0.51 8.59 16 21 C -0.05 -1.77 6.90 24.83 0.17 -1.60 16 22 C -0.20 -7.21 10.81 22.19 0.24 -6.97 16 23 C -0.22 -6.41 10.91 22.19 0.24 -6.17 16 24 C -0.04 -1.22 12.09 66.97 0.81 -0.41 16 25 O -0.19 -7.30 10.65 -2.53 -0.03 -7.32 16 26 N -0.22 -10.18 7.80 -48.17 -0.38 -10.55 16 27 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 31 H 0.09 1.11 7.05 -2.39 -0.02 1.10 16 32 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.11 1.32 8.14 -2.38 -0.02 1.30 16 34 H 0.22 3.79 7.16 -2.91 -0.02 3.77 16 35 H 0.16 5.38 8.06 -2.91 -0.02 5.35 16 36 H 0.01 0.74 8.02 -2.39 -0.02 0.72 16 37 H 0.06 3.10 5.38 -2.39 -0.01 3.08 16 38 H 0.26 13.79 8.31 -92.71 -0.77 13.02 16 39 H 0.12 4.63 8.07 -2.39 -0.02 4.61 16 40 H 0.09 3.63 7.37 -2.39 -0.02 3.61 16 41 H 0.15 5.12 8.06 -2.91 -0.02 5.09 16 42 H 0.18 3.80 8.06 -2.91 -0.02 3.77 16 43 H 0.24 4.23 8.06 -2.91 -0.02 4.21 16 Total: -1.00 -75.44 368.16 6.37 -69.08 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: 1.01 Total: 23.91 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: 6.62 Total: 1.49 kcal Atomic # 7 Polarization: -98.95 SS G_CDS: -3.20 Total: -102.15 kcal Atomic # 8 Polarization: -37.55 SS G_CDS: -0.09 Total: -37.64 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Total: -75.44 6.37 -69.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264976116.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.446 kcal (2) G-P(sol) polarization free energy of solvation -75.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds