Wall clock time and date at job start Tue Mar 31 2020 11:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46867 * 2 1 4 4 N 1.46497 * 109.46916 * 179.97438 * 3 2 1 5 5 C 1.34263 * 125.75301 * 125.00257 * 4 3 2 6 6 C 1.38047 * 107.41776 * 179.97438 * 5 4 3 7 7 C 1.47430 * 126.41500 * 179.97438 * 6 5 4 8 8 O 1.21607 * 119.99722 * 44.10978 * 7 6 5 9 9 N 1.34768 * 120.00008 * 224.10601 * 7 6 5 10 10 C 1.46500 * 120.00172 * 185.42510 * 9 7 6 11 11 C 1.50701 * 109.47228 * 89.99901 * 10 9 7 12 12 H 1.07995 * 119.99802 * 0.02562 * 11 10 9 13 13 C 1.37881 * 119.99784 * 180.02562 * 11 10 9 14 14 N 1.31510 * 119.99747 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 120.00005 * 359.97438 * 13 11 10 16 16 H 1.48503 * 109.46830 * 90.00437 * 15 13 11 17 17 H 1.48497 * 109.47042 * 210.00131 * 15 13 11 18 18 H 1.48502 * 109.47377 * 330.00329 * 15 13 11 19 19 C 1.46504 * 120.00253 * 5.42186 * 9 7 6 20 20 C 1.50698 * 109.46864 * 84.37341 * 19 9 7 21 21 C 1.34515 * 125.79055 * 89.72331 * 20 19 9 22 22 C 1.41385 * 106.83912 * 179.89026 * 21 20 19 23 23 C 1.34515 * 106.84368 * 0.36247 * 22 21 20 24 24 O 1.34303 * 125.78843 * 270.02472 * 20 19 9 25 25 C 1.41293 * 107.16899 * 0.02562 * 6 5 4 26 26 N 1.30443 * 108.02108 * 359.73794 * 25 6 5 27 27 H 1.09008 * 109.47019 * 299.99808 * 1 2 3 28 28 H 1.08994 * 109.47518 * 59.99882 * 1 2 3 29 29 H 1.09001 * 109.47306 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46883 * 120.00164 * 2 1 3 31 31 H 1.09000 * 109.46737 * 240.00190 * 2 1 3 32 32 H 1.09001 * 109.47523 * 300.00341 * 3 2 1 33 33 H 1.09008 * 109.47144 * 60.00269 * 3 2 1 34 34 H 1.07997 * 126.28709 * 359.97438 * 5 4 3 35 35 H 1.09000 * 109.47173 * 210.00011 * 10 9 7 36 36 H 1.09001 * 109.47051 * 329.99914 * 10 9 7 37 37 H 0.97003 * 119.99845 * 179.97438 * 14 13 11 38 38 H 1.09001 * 109.47627 * 204.37444 * 19 9 7 39 39 H 1.09005 * 109.47191 * 324.37389 * 19 9 7 40 40 H 1.07995 * 126.58068 * 0.02562 * 21 20 19 41 41 H 1.07997 * 126.57583 * 180.16274 * 22 21 20 42 42 H 1.07994 * 125.79388 * 179.75289 * 23 22 21 43 43 H 1.07999 * 125.98680 * 180.02562 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.2898 2.0674 -0.8917 6 6 5.6000 1.8188 -0.5350 7 6 6.8043 2.3066 -1.2317 8 8 6.8644 3.4622 -1.6055 9 7 7.8385 1.4717 -1.4544 10 6 9.0805 1.9837 -2.0389 11 6 10.0066 2.4318 -0.9377 12 1 9.7008 2.3437 0.0943 13 6 11.2443 2.9544 -1.2479 14 7 12.0523 3.3459 -0.2870 15 14 11.7734 3.1061 -3.0330 16 1 11.3578 4.4301 -3.5615 17 1 13.2501 2.9781 -3.1241 18 1 11.1331 2.0307 -3.8322 19 6 7.7210 0.0521 -1.1118 20 6 7.0529 -0.6842 -2.2443 21 6 7.6787 -1.2538 -3.2900 22 6 6.6760 -1.8314 -4.1023 23 6 5.4968 -1.5732 -3.5087 24 8 5.7312 -0.8780 -2.3837 25 6 5.5708 1.0085 0.6221 26 7 4.3223 0.7957 0.9342 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.6766 1.9564 -0.8899 33 1 1.6766 1.9563 0.8901 34 1 3.9571 2.6563 -1.7336 35 1 9.5607 1.1958 -2.6193 36 1 8.8546 2.8282 -2.6899 37 1 12.9232 3.7132 -0.5051 38 1 8.7140 -0.3645 -0.9433 39 1 7.1236 -0.0549 -0.2063 40 1 8.7429 -1.2690 -3.4726 41 1 6.8275 -2.3729 -5.0244 42 1 4.5262 -1.8736 -3.8748 43 1 6.4313 0.6350 1.1572 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272681878.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:59 Heat of formation + Delta-G solvation = 67.976448 kcal Electronic energy + Delta-G solvation = -26826.483654 eV Core-core repulsion = 23068.971271 eV Total energy + Delta-G solvation = -3757.512384 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.33346 -41.19124 -38.63859 -35.54698 -35.22683 -32.79876 -32.62751 -31.71292 -30.36294 -30.07910 -28.06176 -26.48473 -25.53405 -23.18161 -22.47601 -21.52944 -21.15495 -20.69276 -20.36735 -18.82647 -17.56338 -17.02649 -16.66218 -16.08084 -15.77247 -15.70587 -15.23842 -14.82783 -14.69369 -14.30537 -14.04280 -13.71772 -13.38729 -13.03155 -12.74528 -12.65400 -12.60991 -12.54038 -12.44640 -12.32309 -12.12726 -11.72857 -11.63469 -11.41835 -11.21182 -10.91398 -10.73680 -10.53092 -10.15925 -9.72590 -9.54718 -9.39347 -9.13744 -8.57831 -8.43532 -8.30262 -7.77249 -6.07386 -4.06433 1.84134 1.89286 2.41540 2.52170 2.78373 3.18491 3.31296 3.37347 3.39722 3.74505 3.97542 4.29576 4.41359 4.52638 4.74683 4.85388 4.90722 4.96859 5.03944 5.14651 5.15359 5.21891 5.25503 5.29234 5.39768 5.52989 5.62129 5.63344 5.76404 5.88630 5.89853 5.92935 5.98071 6.13290 6.27743 6.55505 6.68113 6.74511 6.95246 6.98638 7.27533 7.40115 7.61483 7.70365 8.21065 8.47701 8.94054 9.00259 9.52933 11.05735 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015146 B = 0.004160 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.208067 B = 6729.173878 C = 7929.487374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.135 4.135 3 C 0.133 3.867 4 N -0.365 5.365 5 C 0.108 3.892 6 C -0.268 4.268 7 C 0.592 3.408 8 O -0.538 6.538 9 N -0.584 5.584 10 C 0.217 3.783 11 C -0.531 4.531 12 H 0.077 0.923 13 C 0.074 3.926 14 N -0.896 5.896 15 Si 0.873 3.127 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.265 1.265 19 C 0.184 3.816 20 C -0.016 4.016 21 C -0.203 4.203 22 C -0.214 4.214 23 C -0.053 4.053 24 O -0.167 6.167 25 C 0.079 3.921 26 N -0.296 5.296 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.178 0.822 35 H 0.031 0.969 36 H 0.039 0.961 37 H 0.265 0.735 38 H 0.117 0.883 39 H 0.093 0.907 40 H 0.148 0.852 41 H 0.143 0.857 42 H 0.194 0.806 43 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.537 -11.108 -3.238 23.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.174 4.174 3 C 0.012 3.988 4 N -0.145 5.145 5 C -0.041 4.041 6 C -0.283 4.283 7 C 0.379 3.621 8 O -0.415 6.415 9 N -0.314 5.314 10 C 0.097 3.903 11 C -0.569 4.569 12 H 0.095 0.905 13 C -0.128 4.128 14 N -0.534 5.534 15 Si 0.700 3.300 16 H -0.199 1.199 17 H -0.211 1.211 18 H -0.190 1.190 19 C 0.060 3.940 20 C -0.068 4.068 21 C -0.223 4.223 22 C -0.233 4.233 23 C -0.121 4.121 24 O -0.063 6.063 25 C -0.108 4.108 26 N -0.116 5.116 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.113 0.887 33 H 0.103 0.897 34 H 0.195 0.805 35 H 0.049 0.951 36 H 0.057 0.943 37 H 0.074 0.926 38 H 0.135 0.865 39 H 0.110 0.890 40 H 0.165 0.835 41 H 0.161 0.839 42 H 0.211 0.789 43 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -21.466 -10.840 -2.374 24.165 hybrid contribution 1.120 0.379 -1.795 2.150 sum -20.346 -10.460 -4.169 23.255 Atomic orbital electron populations 1.21714 0.94581 1.02424 1.02061 1.21792 0.96155 0.95441 1.03965 1.21817 0.74073 0.99037 1.03856 1.48385 1.06397 1.38959 1.20735 1.22725 0.90023 0.96324 0.95021 1.20386 0.93663 1.11315 1.02934 1.17253 0.81473 0.84956 0.78394 1.90744 1.81139 1.17628 1.51984 1.47780 1.15194 1.06091 1.62378 1.19715 0.80584 0.95118 0.94906 1.21342 0.99380 1.41935 0.94242 0.90460 1.24828 0.96295 0.94577 0.97120 1.69892 1.09369 1.42202 1.31973 0.86890 0.77856 0.79453 0.85767 1.19908 1.21099 1.18969 1.20120 1.00673 0.81142 0.92103 1.23290 0.80425 1.02286 1.00767 1.21670 1.00880 1.03932 0.95796 1.21785 0.92581 1.06348 1.02582 1.23893 1.00022 1.00325 0.87908 1.84070 1.25968 1.57865 1.38364 1.24030 0.95030 0.96171 0.95545 1.77048 1.01681 1.19654 1.13240 0.92317 0.92483 0.92010 0.90272 0.91301 0.88690 0.89676 0.80493 0.95097 0.94315 0.92551 0.86487 0.88954 0.83453 0.83926 0.78893 0.79213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.91 37.16 0.37 -0.44 16 2 C -0.14 -1.04 6.11 -26.73 -0.16 -1.20 16 3 C 0.13 1.11 6.49 -4.04 -0.03 1.08 16 4 N -0.36 -4.62 3.65 -60.81 -0.22 -4.84 16 5 C 0.11 1.55 11.45 -16.56 -0.19 1.36 16 6 C -0.27 -4.61 5.33 -105.06 -0.56 -5.17 16 7 C 0.59 12.68 7.49 -12.52 -0.09 12.59 16 8 O -0.54 -13.65 16.65 5.27 0.09 -13.56 16 9 N -0.58 -12.17 2.45 -177.70 -0.44 -12.60 16 10 C 0.22 5.26 4.24 -5.19 -0.02 5.24 16 11 C -0.53 -14.92 9.94 -34.44 -0.34 -15.26 16 12 H 0.08 2.36 8.06 -52.49 -0.42 1.93 16 13 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 14 N -0.90 -27.31 13.96 55.43 0.77 -26.54 16 15 Si 0.87 21.41 27.47 -169.99 -4.67 16.74 16 16 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.26 -6.11 6.54 56.52 0.37 -5.74 16 19 C 0.18 3.05 5.73 -5.19 -0.03 3.02 16 20 C -0.02 -0.25 6.85 -35.63 -0.24 -0.49 16 21 C -0.20 -3.06 10.81 -39.70 -0.43 -3.49 16 22 C -0.21 -2.77 10.91 -39.70 -0.43 -3.20 16 23 C -0.05 -0.66 12.09 29.42 0.36 -0.30 16 24 O -0.17 -2.52 10.65 5.70 0.06 -2.46 16 25 C 0.08 1.22 10.00 -16.98 -0.17 1.05 16 26 N -0.30 -4.34 12.34 30.86 0.38 -3.96 16 27 H 0.06 0.29 8.14 -51.92 -0.42 -0.13 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.09 0.57 8.06 -51.93 -0.42 0.15 16 33 H 0.08 0.65 8.14 -51.92 -0.42 0.22 16 34 H 0.18 2.13 8.06 -52.49 -0.42 1.70 16 35 H 0.03 0.71 7.13 -51.93 -0.37 0.34 16 36 H 0.04 1.02 6.78 -51.93 -0.35 0.66 16 37 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 38 H 0.12 1.85 8.03 -51.93 -0.42 1.43 16 39 H 0.09 1.36 3.99 -51.93 -0.21 1.16 16 40 H 0.15 2.13 8.06 -52.49 -0.42 1.71 16 41 H 0.14 1.49 8.06 -52.49 -0.42 1.07 16 42 H 0.19 1.60 8.06 -52.49 -0.42 1.18 16 43 H 0.19 2.60 6.81 -52.49 -0.36 2.24 16 LS Contribution 368.99 15.07 5.56 5.56 Total: -1.00 -35.85 368.99 -6.48 -42.33 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -5.94 Total: 2.50 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: -2.08 Total: -3.18 kcal Atomic # 7 Polarization: -48.44 SS G_CDS: 0.50 Total: -47.94 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: 0.15 Total: -16.02 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.67 Total: 16.74 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.85 -6.48 -42.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272681878.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.305 kcal (2) G-P(sol) polarization free energy of solvation -35.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds