Wall clock time and date at job start Tue Mar 31 2020 11:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46867 * 2 1 4 4 N 1.46497 * 109.46916 * 179.97438 * 3 2 1 5 5 C 1.34263 * 125.75301 * 125.00257 * 4 3 2 6 6 C 1.38047 * 107.41776 * 179.97438 * 5 4 3 7 7 C 1.47430 * 126.41500 * 179.97438 * 6 5 4 8 8 O 1.21607 * 119.99722 * 44.10978 * 7 6 5 9 9 N 1.34768 * 120.00008 * 224.10601 * 7 6 5 10 10 C 1.46500 * 120.00172 * 185.42510 * 9 7 6 11 11 C 1.50701 * 109.47228 * 89.99901 * 10 9 7 12 12 H 1.07995 * 119.99802 * 0.02562 * 11 10 9 13 13 C 1.37881 * 119.99784 * 180.02562 * 11 10 9 14 14 N 1.31510 * 119.99747 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 120.00005 * 359.97438 * 13 11 10 16 16 H 1.48503 * 109.46830 * 90.00437 * 15 13 11 17 17 H 1.48497 * 109.47042 * 210.00131 * 15 13 11 18 18 H 1.48502 * 109.47377 * 330.00329 * 15 13 11 19 19 C 1.46504 * 120.00253 * 5.42186 * 9 7 6 20 20 C 1.50698 * 109.46864 * 84.37341 * 19 9 7 21 21 C 1.34515 * 125.79055 * 89.72331 * 20 19 9 22 22 C 1.41385 * 106.83912 * 179.89026 * 21 20 19 23 23 C 1.34515 * 106.84368 * 0.36247 * 22 21 20 24 24 O 1.34303 * 125.78843 * 270.02472 * 20 19 9 25 25 C 1.41293 * 107.16899 * 0.02562 * 6 5 4 26 26 N 1.30443 * 108.02108 * 359.73794 * 25 6 5 27 27 H 1.09008 * 109.47019 * 299.99808 * 1 2 3 28 28 H 1.08994 * 109.47518 * 59.99882 * 1 2 3 29 29 H 1.09001 * 109.47306 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46883 * 120.00164 * 2 1 3 31 31 H 1.09000 * 109.46737 * 240.00190 * 2 1 3 32 32 H 1.09001 * 109.47523 * 300.00341 * 3 2 1 33 33 H 1.09008 * 109.47144 * 60.00269 * 3 2 1 34 34 H 1.07997 * 126.28709 * 359.97438 * 5 4 3 35 35 H 1.09000 * 109.47173 * 210.00011 * 10 9 7 36 36 H 1.09001 * 109.47051 * 329.99914 * 10 9 7 37 37 H 0.97003 * 119.99845 * 179.97438 * 14 13 11 38 38 H 1.09001 * 109.47627 * 204.37444 * 19 9 7 39 39 H 1.09005 * 109.47191 * 324.37389 * 19 9 7 40 40 H 1.07995 * 126.58068 * 0.02562 * 21 20 19 41 41 H 1.07997 * 126.57583 * 180.16274 * 22 21 20 42 42 H 1.07994 * 125.79388 * 179.75289 * 23 22 21 43 43 H 1.07999 * 125.98680 * 180.02562 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.2898 2.0674 -0.8917 6 6 5.6000 1.8188 -0.5350 7 6 6.8043 2.3066 -1.2317 8 8 6.8644 3.4622 -1.6055 9 7 7.8385 1.4717 -1.4544 10 6 9.0805 1.9837 -2.0389 11 6 10.0066 2.4318 -0.9377 12 1 9.7008 2.3437 0.0943 13 6 11.2443 2.9544 -1.2479 14 7 12.0523 3.3459 -0.2870 15 14 11.7734 3.1061 -3.0330 16 1 11.3578 4.4301 -3.5615 17 1 13.2501 2.9781 -3.1241 18 1 11.1331 2.0307 -3.8322 19 6 7.7210 0.0521 -1.1118 20 6 7.0529 -0.6842 -2.2443 21 6 7.6787 -1.2538 -3.2900 22 6 6.6760 -1.8314 -4.1023 23 6 5.4968 -1.5732 -3.5087 24 8 5.7312 -0.8780 -2.3837 25 6 5.5708 1.0085 0.6221 26 7 4.3223 0.7957 0.9342 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.6766 1.9564 -0.8899 33 1 1.6766 1.9563 0.8901 34 1 3.9571 2.6563 -1.7336 35 1 9.5607 1.1958 -2.6193 36 1 8.8546 2.8282 -2.6899 37 1 12.9232 3.7132 -0.5051 38 1 8.7140 -0.3645 -0.9433 39 1 7.1236 -0.0549 -0.2063 40 1 8.7429 -1.2690 -3.4726 41 1 6.8275 -2.3729 -5.0244 42 1 4.5262 -1.8736 -3.8748 43 1 6.4313 0.6350 1.1572 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272681878.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:59 Heat of formation + Delta-G solvation = 44.764039 kcal Electronic energy + Delta-G solvation = -26827.490220 eV Core-core repulsion = 23068.971271 eV Total energy + Delta-G solvation = -3758.518949 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.41714 -42.35527 -40.24338 -36.91607 -36.27987 -34.78538 -33.81317 -32.68546 -31.84267 -31.29921 -29.68768 -27.41078 -26.85783 -24.90688 -23.26970 -22.66407 -22.55642 -21.72751 -21.44411 -20.22480 -19.12779 -18.70067 -17.91791 -17.36977 -17.19196 -16.64747 -16.58480 -16.12877 -15.92836 -15.65334 -15.21777 -15.09077 -14.76559 -14.33533 -14.08115 -13.98678 -13.77839 -13.67615 -13.50758 -13.47996 -13.22208 -13.07342 -12.86914 -12.55740 -12.45765 -12.35126 -12.04542 -11.99129 -11.71849 -11.62601 -10.83467 -10.79573 -10.77000 -10.47611 -9.78698 -9.44461 -9.34358 -8.30476 -6.35354 0.68123 0.78299 1.20566 1.35215 1.39014 1.45240 1.47399 1.71554 2.05706 2.33228 2.33858 2.46642 3.03810 3.43810 3.79487 3.82346 3.92178 3.94096 4.00073 4.14756 4.20220 4.30013 4.35624 4.39503 4.55200 4.57943 4.64075 4.67432 4.82931 4.85492 4.95478 4.98020 5.06749 5.15451 5.18927 5.23198 5.38697 5.41298 5.46643 5.55972 5.67456 5.95486 6.26201 6.28784 6.54122 6.61246 6.66767 7.22979 7.37909 8.86048 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015146 B = 0.004160 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.208067 B = 6729.173878 C = 7929.487374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.128 4.128 3 C 0.121 3.879 4 N -0.351 5.351 5 C 0.123 3.877 6 C -0.299 4.299 7 C 0.588 3.412 8 O -0.591 6.591 9 N -0.588 5.588 10 C 0.228 3.772 11 C -0.535 4.535 12 H 0.036 0.964 13 C 0.016 3.984 14 N -0.942 5.942 15 Si 0.941 3.059 16 H -0.277 1.277 17 H -0.275 1.275 18 H -0.239 1.239 19 C 0.184 3.816 20 C -0.038 4.038 21 C -0.211 4.211 22 C -0.225 4.225 23 C -0.041 4.041 24 O -0.179 6.179 25 C 0.075 3.925 26 N -0.303 5.303 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.126 0.874 33 H 0.097 0.903 34 H 0.202 0.798 35 H 0.050 0.950 36 H 0.019 0.981 37 H 0.268 0.732 38 H 0.118 0.882 39 H 0.107 0.893 40 H 0.148 0.852 41 H 0.168 0.832 42 H 0.236 0.764 43 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.141 -12.620 -5.283 26.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.167 4.167 3 C 0.002 3.998 4 N -0.130 5.130 5 C -0.028 4.028 6 C -0.314 4.314 7 C 0.377 3.623 8 O -0.473 6.473 9 N -0.317 5.317 10 C 0.107 3.893 11 C -0.574 4.574 12 H 0.055 0.945 13 C -0.182 4.182 14 N -0.582 5.582 15 Si 0.764 3.236 16 H -0.203 1.203 17 H -0.200 1.200 18 H -0.162 1.162 19 C 0.061 3.939 20 C -0.090 4.090 21 C -0.231 4.231 22 C -0.244 4.244 23 C -0.109 4.109 24 O -0.075 6.075 25 C -0.111 4.111 26 N -0.124 5.124 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.144 0.856 33 H 0.115 0.885 34 H 0.219 0.781 35 H 0.068 0.932 36 H 0.037 0.963 37 H 0.077 0.923 38 H 0.136 0.864 39 H 0.125 0.875 40 H 0.166 0.834 41 H 0.186 0.814 42 H 0.252 0.748 43 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -24.112 -12.424 -4.389 27.478 hybrid contribution 1.770 0.798 -1.087 2.225 sum -22.342 -11.626 -5.477 25.775 Atomic orbital electron populations 1.21679 0.92596 1.02943 1.02999 1.21717 0.97717 0.94533 1.02697 1.22322 0.71321 1.00106 1.06033 1.48756 1.07794 1.37189 1.19269 1.23029 0.89196 0.95323 0.95279 1.20101 0.93155 1.13894 1.04236 1.17858 0.82497 0.84244 0.77652 1.90692 1.82375 1.19721 1.54467 1.47792 1.13998 1.07993 1.61925 1.19357 0.81501 0.95010 0.93467 1.21541 1.00334 1.41908 0.93570 0.94518 1.25751 0.96296 0.94075 1.02094 1.70037 1.10055 1.43535 1.34618 0.85808 0.77967 0.79860 0.79926 1.20296 1.19987 1.16214 1.20193 1.01379 0.78814 0.93497 1.22916 0.81127 1.03867 1.01053 1.21925 1.01534 1.03706 0.95929 1.22104 0.92084 1.06719 1.03453 1.24758 1.01674 0.98154 0.86285 1.84054 1.25371 1.58466 1.39607 1.24098 0.95706 0.96075 0.95222 1.77021 1.01422 1.20018 1.13929 0.91769 0.91153 0.91756 0.92169 0.91957 0.85570 0.88494 0.78140 0.93223 0.96252 0.92268 0.86428 0.87539 0.83420 0.81420 0.74794 0.78665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.91 71.98 0.71 -0.41 16 2 C -0.13 -1.64 6.11 30.59 0.19 -1.45 16 3 C 0.12 1.65 6.49 86.38 0.56 2.21 16 4 N -0.35 -8.17 3.65 -346.29 -1.26 -9.43 16 5 C 0.12 3.34 11.45 84.28 0.96 4.30 16 6 C -0.30 -10.30 5.33 -20.15 -0.11 -10.40 16 7 C 0.59 25.93 7.49 86.67 0.65 26.58 16 8 O -0.59 -31.17 16.65 -4.05 -0.07 -31.24 16 9 N -0.59 -25.16 2.45 -834.38 -2.05 -27.21 16 10 C 0.23 11.30 4.24 85.63 0.36 11.67 16 11 C -0.53 -31.31 9.94 25.60 0.25 -31.05 16 12 H 0.04 2.38 8.06 -2.91 -0.02 2.35 16 13 C 0.02 0.95 5.47 84.66 0.46 1.42 16 14 N -0.94 -59.34 13.96 21.45 0.30 -59.04 16 15 Si 0.94 44.50 27.47 68.60 1.88 46.39 16 16 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 17 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 18 H -0.24 -10.19 6.54 99.48 0.65 -9.54 16 19 C 0.18 6.19 5.73 85.63 0.49 6.68 16 20 C -0.04 -1.18 6.85 24.83 0.17 -1.01 16 21 C -0.21 -6.06 10.81 22.19 0.24 -5.82 16 22 C -0.22 -5.18 10.91 22.19 0.24 -4.94 16 23 C -0.04 -0.88 12.09 66.97 0.81 -0.07 16 24 O -0.18 -5.05 10.65 -2.53 -0.03 -5.08 16 25 C 0.08 2.33 10.00 85.65 0.86 3.19 16 26 N -0.30 -8.59 12.34 -56.28 -0.69 -9.28 16 27 H 0.06 0.45 8.14 -2.38 -0.02 0.43 16 28 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.13 0.99 8.06 -2.39 -0.02 0.97 16 33 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 34 H 0.20 4.35 8.06 -2.91 -0.02 4.33 16 35 H 0.05 2.26 7.13 -2.39 -0.02 2.24 16 36 H 0.02 1.04 6.78 -2.39 -0.02 1.02 16 37 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 38 H 0.12 3.83 8.03 -2.39 -0.02 3.81 16 39 H 0.11 3.22 3.99 -2.38 -0.01 3.21 16 40 H 0.15 4.11 8.06 -2.91 -0.02 4.09 16 41 H 0.17 2.91 8.06 -2.91 -0.02 2.89 16 42 H 0.24 2.76 8.06 -2.91 -0.02 2.74 16 43 H 0.20 5.52 6.81 -2.91 -0.02 5.50 16 Total: -1.00 -81.35 368.99 5.90 -75.45 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: 0.96 Total: 18.58 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: 6.86 Total: 0.88 kcal Atomic # 7 Polarization: -101.26 SS G_CDS: -3.71 Total: -104.97 kcal Atomic # 8 Polarization: -36.23 SS G_CDS: -0.09 Total: -36.32 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.88 Total: 46.39 kcal Total: -81.35 5.90 -75.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272681878.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.212 kcal (2) G-P(sol) polarization free energy of solvation -81.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds