Wall clock time and date at job start Tue Mar 31 2020 12:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47124 * 2 1 4 4 O 1.42904 * 109.46961 * 240.00095 * 2 1 3 5 5 C 1.35783 * 116.99913 * 204.06540 * 4 2 1 6 6 C 1.38633 * 120.07791 * 4.43741 * 5 4 2 7 7 C 1.38051 * 120.16618 * 179.76584 * 6 5 4 8 8 C 1.39067 * 120.32286 * 0.51573 * 7 6 5 9 9 N 1.40168 * 119.92062 * 179.76600 * 8 7 6 10 10 C 1.34775 * 119.99739 * 215.21112 * 9 8 7 11 11 O 1.21593 * 120.00193 * 355.80854 * 10 9 8 12 12 N 1.34783 * 120.00167 * 175.81200 * 10 9 8 13 13 C 1.46493 * 119.99861 * 180.02562 * 12 10 9 14 14 C 1.53006 * 109.46738 * 179.97438 * 13 12 10 15 15 C 1.50707 * 109.46959 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00061 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99740 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99926 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99737 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47418 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46799 * 120.00290 * 19 17 15 22 22 H 1.48497 * 109.47216 * 240.00250 * 19 17 15 23 23 C 1.38407 * 120.15173 * 359.74397 * 8 7 6 24 24 C 1.39689 * 119.83347 * 359.97438 * 23 8 7 25 25 C 1.43201 * 120.16124 * 179.97438 * 24 23 8 26 26 N 4.92539 * 101.52977 * 247.23903 * 2 1 3 27 27 H 1.08993 * 109.47222 * 59.99470 * 1 2 3 28 28 H 1.09008 * 109.46915 * 299.99703 * 1 2 3 29 29 H 1.09002 * 109.47300 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46963 * 120.00040 * 2 1 3 31 31 H 1.08999 * 109.46888 * 60.00499 * 3 2 1 32 32 H 1.09000 * 109.47169 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.47501 * 300.00354 * 3 2 1 34 34 H 1.08003 * 119.91653 * 0.02715 * 6 5 4 35 35 H 1.07995 * 119.83532 * 180.25870 * 7 6 5 36 36 H 0.96996 * 120.00533 * 35.21414 * 9 8 7 37 37 H 0.96991 * 119.99442 * 0.02562 * 12 10 9 38 38 H 1.08999 * 109.47631 * 299.99924 * 13 12 10 39 39 H 1.09005 * 109.47758 * 60.00125 * 13 12 10 40 40 H 1.08988 * 109.47382 * 300.00008 * 14 13 12 41 41 H 1.08997 * 109.46996 * 60.00513 * 14 13 12 42 42 H 0.97006 * 119.99704 * 179.97438 * 18 17 15 43 43 H 1.08001 * 120.08607 * 180.02562 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 3.2533 -1.2074 -1.1046 6 6 3.9679 -1.1670 0.0827 7 6 5.2339 -1.7134 0.1493 8 6 5.8062 -2.2984 -0.9751 9 7 7.0942 -2.8462 -0.8993 10 6 7.9249 -2.7638 -1.9574 11 8 7.5321 -2.2826 -3.0027 12 7 9.1910 -3.2148 -1.8569 13 6 10.0941 -3.1246 -3.0069 14 6 11.4600 -3.7013 -2.6290 15 6 12.3889 -3.6091 -3.8122 16 1 12.0400 -3.1816 -4.7406 17 6 13.6844 -4.0696 -3.7091 18 7 14.1093 -4.5897 -2.5784 19 14 14.8359 -3.9547 -5.1754 20 1 14.1206 -3.3341 -6.3192 21 1 16.0120 -3.1219 -4.8170 22 1 15.2907 -5.3163 -5.5555 23 6 5.1068 -2.3412 -2.1687 24 6 3.8229 -1.7955 -2.2418 25 6 3.0932 -1.8356 -3.4732 26 7 2.5145 -1.8671 -4.4502 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9562 0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 3.5314 -0.7106 0.9588 35 1 5.7842 -1.6826 1.0780 36 1 7.3876 -3.2847 -0.0854 37 1 9.5042 -3.5990 -1.0232 38 1 9.6784 -3.6905 -3.8406 39 1 10.2088 -2.0804 -3.2979 40 1 11.8755 -3.1351 -1.7956 41 1 11.3456 -4.7454 -2.3379 42 1 15.0207 -4.9140 -2.5059 43 1 5.5521 -2.7962 -3.0411 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273316524.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:33 Heat of formation + Delta-G solvation = -19.062993 kcal Electronic energy + Delta-G solvation = -24890.674805 eV Core-core repulsion = 21129.388108 eV Total energy + Delta-G solvation = -3761.286697 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.02404 -40.02212 -38.08159 -36.51069 -35.08206 -34.50329 -33.41269 -32.85040 -31.57677 -30.01875 -28.54178 -27.68408 -24.91775 -24.44056 -23.46835 -21.83340 -20.96756 -20.54494 -19.57768 -18.46019 -18.06984 -16.53809 -16.43866 -16.17490 -15.91192 -15.46216 -14.90234 -14.82105 -14.55822 -14.38615 -14.10671 -13.72354 -13.60346 -13.35293 -13.22687 -13.12179 -12.99181 -12.79507 -12.58735 -12.42213 -12.31775 -12.24308 -11.80672 -11.36766 -11.23809 -11.09376 -11.05519 -10.65004 -10.42020 -10.13585 -9.92084 -9.63562 -9.31471 -9.24216 -8.66376 -8.43300 -7.92012 -6.12978 -4.15625 0.55029 1.06443 2.58421 2.68710 2.76961 2.84790 3.26810 3.34752 3.34944 3.40139 3.72033 3.78985 4.25220 4.32751 4.38337 4.46504 4.48437 4.62388 4.68845 4.86437 5.07698 5.10761 5.22806 5.24609 5.27774 5.30007 5.50022 5.59354 5.64314 5.72098 5.81570 5.94558 6.14329 6.21086 6.31069 6.64634 6.69405 6.81898 6.98751 7.00191 7.49734 7.51443 7.56817 7.85821 8.11900 8.26357 8.71814 8.90748 9.49591 10.98617 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.028525 B = 0.002063 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.368899 B =13569.599099 C =14133.254679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.074 3.926 3 C -0.181 4.181 4 O -0.305 6.305 5 C 0.158 3.842 6 C -0.194 4.194 7 C -0.077 4.077 8 C 0.138 3.862 9 N -0.690 5.690 10 C 0.696 3.304 11 O -0.580 6.580 12 N -0.730 5.730 13 C 0.138 3.862 14 C 0.012 3.988 15 C -0.521 4.521 16 H 0.061 0.939 17 C 0.059 3.941 18 N -0.894 5.894 19 Si 0.897 3.103 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.283 1.283 23 C -0.034 4.034 24 C -0.046 4.046 25 C 0.269 3.731 26 N -0.421 5.421 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.143 0.857 35 H 0.137 0.863 36 H 0.408 0.592 37 H 0.396 0.604 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.023 0.977 41 H 0.023 0.977 42 H 0.262 0.738 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.876 7.377 14.270 28.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.018 3.982 3 C -0.239 4.239 4 O -0.219 6.219 5 C 0.109 3.891 6 C -0.213 4.213 7 C -0.099 4.099 8 C 0.042 3.958 9 N -0.339 5.339 10 C 0.397 3.603 11 O -0.458 6.458 12 N -0.383 5.383 13 C 0.016 3.984 14 C -0.025 4.025 15 C -0.560 4.560 16 H 0.079 0.921 17 C -0.143 4.143 18 N -0.533 5.533 19 Si 0.724 3.276 20 H -0.195 1.195 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.057 4.057 24 C -0.050 4.050 25 C -0.046 4.046 26 N -0.097 5.097 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.160 0.840 35 H 0.155 0.845 36 H 0.244 0.756 37 H 0.229 0.771 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.041 0.959 41 H 0.041 0.959 42 H 0.071 0.929 43 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -25.000 7.687 11.669 28.640 hybrid contribution 1.451 -0.281 0.749 1.656 sum -23.550 7.407 12.418 27.634 Atomic orbital electron populations 1.21861 0.92276 1.03336 1.03204 1.22547 0.95601 0.92713 0.87295 1.22382 1.02450 0.95712 1.03340 1.86166 1.27938 1.68069 1.39682 1.18793 0.84759 0.92983 0.92570 1.20917 0.96156 1.07053 0.97186 1.20903 0.95178 0.95475 0.98322 1.17148 0.85028 0.99290 0.94339 1.42649 1.12302 1.61321 1.17669 1.16079 0.81351 0.79496 0.83419 1.90911 1.75919 1.51033 1.27935 1.45570 1.10112 1.64710 1.17881 1.21691 0.90011 1.01053 0.85694 1.19341 0.88821 0.96485 0.97879 1.21077 0.96134 1.40731 0.98026 0.92115 1.24995 0.98219 0.94986 0.96108 1.69962 1.17387 1.40903 1.25034 0.86452 0.80652 0.77780 0.82668 1.19548 1.20940 1.20930 1.21286 0.89587 0.95684 0.99155 1.15123 0.94079 1.09175 0.86662 1.25231 0.93161 0.93624 0.92587 1.81183 1.08898 1.08787 1.10819 0.91398 0.90338 0.91528 0.90315 0.90813 0.91519 0.91327 0.83988 0.84545 0.75635 0.77062 0.92434 0.92442 0.95882 0.95878 0.92887 0.82317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.56 37.16 0.36 -0.38 16 2 C 0.07 0.45 2.87 -26.73 -0.08 0.37 16 3 C -0.18 -0.98 9.31 37.16 0.35 -0.64 16 4 O -0.31 -2.96 9.23 -19.06 -0.18 -3.13 16 5 C 0.16 1.56 6.56 -38.73 -0.25 1.30 16 6 C -0.19 -1.42 8.43 -39.50 -0.33 -1.75 16 7 C -0.08 -0.58 9.95 -39.34 -0.39 -0.97 16 8 C 0.14 1.47 6.29 -83.67 -0.53 0.94 16 9 N -0.69 -7.45 5.35 -14.23 -0.08 -7.53 16 10 C 0.70 10.80 8.40 -86.91 -0.73 10.07 16 11 O -0.58 -11.21 13.79 5.28 0.07 -11.13 16 12 N -0.73 -11.55 5.56 -65.22 -0.36 -11.92 16 13 C 0.14 2.78 5.61 -4.04 -0.02 2.76 16 14 C 0.01 0.29 5.09 -27.88 -0.14 0.15 16 15 C -0.52 -14.11 9.11 -34.44 -0.31 -14.42 16 16 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -25.57 13.29 55.43 0.74 -24.84 16 19 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 20 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 23 C -0.03 -0.43 8.40 -38.98 -0.33 -0.76 16 24 C -0.05 -0.55 5.75 -106.72 -0.61 -1.16 16 25 C 0.27 3.85 14.86 -22.48 -0.33 3.51 16 26 N -0.42 -6.80 18.54 41.83 0.78 -6.03 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.08 0.23 8.14 -51.92 -0.42 -0.19 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.08 0.34 5.88 -51.93 -0.31 0.03 16 31 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.07 0.39 7.53 -51.93 -0.39 0.00 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.14 0.65 5.75 -52.48 -0.30 0.34 16 35 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 36 H 0.41 2.93 8.84 -40.82 -0.36 2.57 16 37 H 0.40 5.17 8.49 -40.82 -0.35 4.83 16 38 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 40 H 0.02 0.57 8.14 -51.94 -0.42 0.14 16 41 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 43 H 0.16 2.36 6.23 -52.49 -0.33 2.03 16 LS Contribution 372.37 15.07 5.61 5.61 Total: -1.00 -33.55 372.37 -7.70 -41.25 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -5.80 Total: 1.09 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: -3.46 Total: 0.54 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: 1.07 Total: -50.31 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: -0.10 Total: -14.27 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.55 -7.70 -41.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273316524.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.184 kcal (2) G-P(sol) polarization free energy of solvation -33.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds