Wall clock time and date at job start Tue Mar 31 2020 12:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47124 * 2 1 4 4 O 1.42904 * 109.46961 * 240.00095 * 2 1 3 5 5 C 1.35783 * 116.99913 * 204.06540 * 4 2 1 6 6 C 1.38633 * 120.07791 * 4.43741 * 5 4 2 7 7 C 1.38051 * 120.16618 * 179.76584 * 6 5 4 8 8 C 1.39067 * 120.32286 * 0.51573 * 7 6 5 9 9 N 1.40168 * 119.92062 * 179.76600 * 8 7 6 10 10 C 1.34775 * 119.99739 * 215.21112 * 9 8 7 11 11 O 1.21593 * 120.00193 * 355.80854 * 10 9 8 12 12 N 1.34783 * 120.00167 * 175.81200 * 10 9 8 13 13 C 1.46493 * 119.99861 * 180.02562 * 12 10 9 14 14 C 1.53006 * 109.46738 * 179.97438 * 13 12 10 15 15 C 1.50707 * 109.46959 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00061 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99740 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99926 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99737 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47418 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46799 * 120.00290 * 19 17 15 22 22 H 1.48497 * 109.47216 * 240.00250 * 19 17 15 23 23 C 1.38407 * 120.15173 * 359.74397 * 8 7 6 24 24 C 1.39689 * 119.83347 * 359.97438 * 23 8 7 25 25 C 1.43201 * 120.16124 * 179.97438 * 24 23 8 26 26 N 4.92539 * 101.52977 * 247.23903 * 2 1 3 27 27 H 1.08993 * 109.47222 * 59.99470 * 1 2 3 28 28 H 1.09008 * 109.46915 * 299.99703 * 1 2 3 29 29 H 1.09002 * 109.47300 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46963 * 120.00040 * 2 1 3 31 31 H 1.08999 * 109.46888 * 60.00499 * 3 2 1 32 32 H 1.09000 * 109.47169 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.47501 * 300.00354 * 3 2 1 34 34 H 1.08003 * 119.91653 * 0.02715 * 6 5 4 35 35 H 1.07995 * 119.83532 * 180.25870 * 7 6 5 36 36 H 0.96996 * 120.00533 * 35.21414 * 9 8 7 37 37 H 0.96991 * 119.99442 * 0.02562 * 12 10 9 38 38 H 1.08999 * 109.47631 * 299.99924 * 13 12 10 39 39 H 1.09005 * 109.47758 * 60.00125 * 13 12 10 40 40 H 1.08988 * 109.47382 * 300.00008 * 14 13 12 41 41 H 1.08997 * 109.46996 * 60.00513 * 14 13 12 42 42 H 0.97006 * 119.99704 * 179.97438 * 18 17 15 43 43 H 1.08001 * 120.08607 * 180.02562 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 3.2533 -1.2074 -1.1046 6 6 3.9679 -1.1670 0.0827 7 6 5.2339 -1.7134 0.1493 8 6 5.8062 -2.2984 -0.9751 9 7 7.0942 -2.8462 -0.8993 10 6 7.9249 -2.7638 -1.9574 11 8 7.5321 -2.2826 -3.0027 12 7 9.1910 -3.2148 -1.8569 13 6 10.0941 -3.1246 -3.0069 14 6 11.4600 -3.7013 -2.6290 15 6 12.3889 -3.6091 -3.8122 16 1 12.0400 -3.1816 -4.7406 17 6 13.6844 -4.0696 -3.7091 18 7 14.1093 -4.5897 -2.5784 19 14 14.8359 -3.9547 -5.1754 20 1 14.1206 -3.3341 -6.3192 21 1 16.0120 -3.1219 -4.8170 22 1 15.2907 -5.3163 -5.5555 23 6 5.1068 -2.3412 -2.1687 24 6 3.8229 -1.7955 -2.2418 25 6 3.0932 -1.8356 -3.4732 26 7 2.5145 -1.8671 -4.4502 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9562 0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 3.5314 -0.7106 0.9588 35 1 5.7842 -1.6826 1.0780 36 1 7.3876 -3.2847 -0.0854 37 1 9.5042 -3.5990 -1.0232 38 1 9.6784 -3.6905 -3.8406 39 1 10.2088 -2.0804 -3.2979 40 1 11.8755 -3.1351 -1.7956 41 1 11.3456 -4.7454 -2.3379 42 1 15.0207 -4.9140 -2.5059 43 1 5.5521 -2.7962 -3.0411 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273316524.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:32 Heat of formation + Delta-G solvation = -41.372967 kcal Electronic energy + Delta-G solvation = -24891.642238 eV Core-core repulsion = 21129.388108 eV Total energy + Delta-G solvation = -3762.254130 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.89291 -41.01060 -38.95825 -37.64645 -36.59490 -35.54237 -34.80574 -33.93823 -32.36883 -31.62951 -29.59004 -28.09771 -26.68713 -25.28319 -24.32755 -23.07766 -22.37909 -21.46019 -20.48014 -19.52275 -18.89404 -18.41588 -17.41943 -17.15479 -16.65984 -16.55590 -16.44659 -15.95366 -15.67174 -15.34653 -15.24767 -14.90788 -14.84002 -14.34213 -14.26261 -14.19205 -14.01435 -13.63937 -13.44142 -13.22816 -13.18712 -13.12083 -12.95915 -12.87311 -12.51276 -12.43330 -12.24235 -11.91562 -11.64873 -11.58221 -11.46263 -11.19804 -10.82666 -10.59081 -10.07764 -10.01487 -8.76800 -8.23057 -6.32234 -0.26263 0.27264 1.41429 1.42901 1.51274 1.56072 1.67327 1.80739 2.09814 2.16955 2.41998 2.81659 2.83555 3.12224 3.31989 3.79114 3.81599 3.98039 4.07620 4.15910 4.19855 4.35052 4.49511 4.54963 4.60697 4.74453 4.75959 4.87937 4.90176 4.91081 4.98091 5.12026 5.18670 5.27441 5.29959 5.33244 5.37038 5.52720 5.63002 5.78519 5.81177 6.01423 6.19165 6.30415 6.46710 6.81253 7.06293 7.36917 7.52357 8.88761 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.028525 B = 0.002063 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.368899 B =13569.599099 C =14133.254679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.065 3.935 3 C -0.180 4.180 4 O -0.327 6.327 5 C 0.167 3.833 6 C -0.180 4.180 7 C -0.047 4.047 8 C 0.118 3.882 9 N -0.667 5.667 10 C 0.696 3.304 11 O -0.622 6.622 12 N -0.724 5.724 13 C 0.159 3.841 14 C 0.023 3.977 15 C -0.545 4.545 16 H 0.057 0.943 17 C 0.008 3.992 18 N -0.924 5.924 19 Si 0.961 3.039 20 H -0.268 1.268 21 H -0.277 1.277 22 H -0.278 1.278 23 C -0.050 4.050 24 C -0.073 4.073 25 C 0.282 3.718 26 N -0.470 5.470 27 H 0.052 0.948 28 H 0.104 0.896 29 H 0.061 0.939 30 H 0.107 0.893 31 H 0.098 0.902 32 H 0.063 0.937 33 H 0.051 0.949 34 H 0.182 0.818 35 H 0.180 0.820 36 H 0.429 0.571 37 H 0.411 0.589 38 H 0.044 0.956 39 H 0.045 0.955 40 H 0.012 0.988 41 H 0.011 0.989 42 H 0.265 0.735 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.324 8.258 17.426 31.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.010 3.990 3 C -0.238 4.238 4 O -0.241 6.241 5 C 0.117 3.883 6 C -0.198 4.198 7 C -0.068 4.068 8 C 0.023 3.977 9 N -0.318 5.318 10 C 0.397 3.603 11 O -0.502 6.502 12 N -0.378 5.378 13 C 0.035 3.965 14 C -0.015 4.015 15 C -0.583 4.583 16 H 0.075 0.925 17 C -0.191 4.191 18 N -0.564 5.564 19 Si 0.787 3.213 20 H -0.192 1.192 21 H -0.202 1.202 22 H -0.203 1.203 23 C -0.073 4.073 24 C -0.078 4.078 25 C -0.031 4.031 26 N -0.147 5.147 27 H 0.071 0.929 28 H 0.123 0.877 29 H 0.081 0.919 30 H 0.124 0.876 31 H 0.117 0.883 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.199 0.801 35 H 0.197 0.803 36 H 0.268 0.732 37 H 0.247 0.753 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.031 0.969 41 H 0.029 0.971 42 H 0.074 0.926 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -25.483 8.558 14.892 30.732 hybrid contribution 1.470 -0.504 -0.110 1.558 sum -24.014 8.054 14.782 29.326 Atomic orbital electron populations 1.21911 0.91731 1.03256 1.03788 1.22924 0.96138 0.93011 0.86936 1.22396 1.02238 0.95337 1.03787 1.86175 1.27771 1.68141 1.42016 1.18912 0.85047 0.91776 0.92520 1.21337 0.95571 1.05757 0.97152 1.21307 0.94858 0.92265 0.98330 1.17322 0.84686 1.00825 0.94853 1.42286 1.11675 1.60793 1.17032 1.16154 0.81303 0.78958 0.83900 1.90904 1.76618 1.52708 1.29989 1.45168 1.10033 1.65294 1.17350 1.21107 0.89047 0.99630 0.86704 1.19139 0.90160 0.95671 0.96489 1.21498 0.97180 1.40717 0.98950 0.92472 1.25813 0.99819 0.94620 0.98801 1.70051 1.17979 1.41608 1.26765 0.85446 0.78562 0.77957 0.79380 1.19201 1.20232 1.20330 1.21019 0.90211 0.96833 0.99238 1.15177 0.94260 1.11642 0.86693 1.25776 0.92332 0.92289 0.92747 1.81159 1.10600 1.10814 1.12120 0.92871 0.87712 0.91949 0.87570 0.88304 0.91757 0.93027 0.80053 0.80268 0.73170 0.75261 0.93764 0.93619 0.96923 0.97057 0.92580 0.85637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.56 71.98 0.69 -0.47 16 2 C 0.06 0.59 2.87 30.59 0.09 0.67 16 3 C -0.18 -1.43 9.31 71.98 0.67 -0.76 16 4 O -0.33 -5.87 9.23 -91.12 -0.84 -6.71 16 5 C 0.17 2.99 6.56 22.82 0.15 3.13 16 6 C -0.18 -1.82 8.43 22.32 0.19 -1.64 16 7 C -0.05 -0.49 9.95 22.42 0.22 -0.27 16 8 C 0.12 2.28 6.29 38.05 0.24 2.52 16 9 N -0.67 -13.14 5.35 -317.19 -1.70 -14.84 16 10 C 0.70 21.40 8.40 179.05 1.50 22.91 16 11 O -0.62 -24.75 13.79 -4.01 -0.06 -24.80 16 12 N -0.72 -22.69 5.56 -478.52 -2.66 -25.35 16 13 C 0.16 6.55 5.61 86.38 0.48 7.04 16 14 C 0.02 1.11 5.09 29.85 0.15 1.26 16 15 C -0.54 -29.88 9.11 25.60 0.23 -29.65 16 16 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 17 C 0.01 0.46 5.46 84.65 0.46 0.92 16 18 N -0.92 -53.02 13.29 21.45 0.28 -52.74 16 19 Si 0.96 43.28 29.54 68.60 2.03 45.31 16 20 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 21 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 22 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 23 C -0.05 -1.28 8.40 22.66 0.19 -1.09 16 24 C -0.07 -1.78 5.75 -21.22 -0.12 -1.90 16 25 C 0.28 8.61 14.86 88.33 1.31 9.92 16 26 N -0.47 -16.28 18.54 19.00 0.35 -15.93 16 27 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.10 0.25 8.14 -2.38 -0.02 0.23 16 29 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.11 0.37 5.88 -2.39 -0.01 0.36 16 31 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.06 0.55 7.53 -2.39 -0.02 0.53 16 33 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.18 0.46 5.75 -2.91 -0.02 0.45 16 35 H 0.18 0.46 8.06 -2.91 -0.02 0.43 16 36 H 0.43 4.79 8.84 -92.71 -0.82 3.97 16 37 H 0.41 10.28 8.49 -92.71 -0.79 9.49 16 38 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 40 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.27 14.29 8.31 -92.70 -0.77 13.52 16 43 H 0.13 4.06 6.23 -2.91 -0.02 4.05 16 Total: -1.00 -76.71 372.37 3.33 -73.38 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -0.54 Total: 9.07 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: 6.46 Total: 12.61 kcal Atomic # 7 Polarization: -105.13 SS G_CDS: -3.72 Total: -108.85 kcal Atomic # 8 Polarization: -30.62 SS G_CDS: -0.90 Total: -31.52 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -76.71 3.33 -73.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273316524.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.004 kcal (2) G-P(sol) polarization free energy of solvation -76.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds