Wall clock time and date at job start Tue Mar 31 2020 11:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46505 * 109.46670 * 176.61206 * 3 2 1 5 5 C 1.37097 * 119.99766 * 263.92750 * 4 3 2 6 6 H 1.08003 * 120.00014 * 199.75109 * 5 4 3 7 7 C 1.38949 * 120.00197 * 19.75179 * 5 4 3 8 8 N 1.31412 * 120.00029 * 21.75195 * 7 5 4 9 9 Si 1.86807 * 120.00074 * 201.74586 * 7 5 4 10 10 H 1.48500 * 109.46755 * 59.99896 * 9 7 5 11 11 H 1.48500 * 109.46901 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46890 * 300.00042 * 9 7 5 13 13 C 1.34774 * 119.99877 * 83.92758 * 4 3 2 14 14 O 1.21298 * 119.99759 * 179.97438 * 13 4 3 15 15 C 1.50697 * 120.00386 * 0.02562 * 13 4 3 16 16 C 1.52991 * 109.47343 * 179.97438 * 15 13 4 17 17 C 1.50704 * 109.47367 * 179.97438 * 16 15 13 18 18 N 1.30276 * 126.27990 * 89.97208 * 17 16 15 19 19 N 1.28663 * 109.38267 * 180.02562 * 18 17 16 20 20 C 1.30278 * 109.37893 * 359.97438 * 19 18 17 21 21 C 1.50698 * 126.28029 * 179.97438 * 20 19 18 22 22 C 1.54264 * 110.03547 * 57.93779 * 21 20 19 23 23 C 1.54961 * 104.16004 * 217.13643 * 22 21 20 24 24 C 1.54887 * 102.77881 * 37.88434 * 23 22 21 25 25 C 1.53879 * 110.03581 * 300.71451 * 21 20 19 26 26 O 1.34359 * 107.43619 * 0.24321 * 20 19 18 27 27 H 4.40645 * 5.51381 * 180.02562 * 4 1 2 28 28 H 1.09001 * 109.47360 * 56.61768 * 3 2 1 29 29 H 1.08994 * 109.47571 * 296.60950 * 3 2 1 30 30 H 0.96994 * 119.99766 * 180.02562 * 8 7 5 31 31 H 1.08999 * 109.47001 * 59.99734 * 15 13 4 32 32 H 1.09002 * 109.47016 * 300.00215 * 15 13 4 33 33 H 1.08999 * 109.47075 * 60.00043 * 16 15 13 34 34 H 1.09002 * 109.47456 * 300.00209 * 16 15 13 35 35 H 1.09006 * 110.01371 * 179.32805 * 21 20 19 36 36 H 1.09001 * 110.48584 * 335.78204 * 22 21 20 37 37 H 1.08998 * 110.48690 * 98.42727 * 22 21 20 38 38 H 1.09008 * 110.71938 * 279.57106 * 23 22 21 39 39 H 1.08997 * 110.92547 * 156.29431 * 23 22 21 40 40 H 1.09005 * 110.48588 * 203.40478 * 24 23 22 41 41 H 1.08999 * 110.59907 * 80.82256 * 24 23 22 42 42 H 1.08996 * 110.03464 * 238.57017 * 25 21 20 43 43 H 1.09003 * 110.02804 * 359.95393 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3798 -0.0816 5 6 3.4803 1.9135 -1.2959 6 1 4.1230 2.7803 -1.3412 7 6 3.0047 1.3393 -2.4685 8 7 1.9240 0.5920 -2.4428 9 14 3.9013 1.6299 -4.0813 10 1 5.2928 1.1229 -3.9723 11 1 3.1971 0.9136 -5.1751 12 1 3.9263 3.0846 -4.3786 13 6 3.2415 2.1237 1.0370 14 8 3.6457 3.2654 0.9695 15 6 2.8610 1.5368 2.3719 16 6 3.0764 2.5818 3.4684 17 6 2.6953 1.9951 4.8032 18 7 3.4850 1.3538 5.6171 19 7 2.8230 0.9956 6.6606 20 6 1.5886 1.3967 6.5482 21 6 0.4858 1.1806 7.5523 22 6 0.8837 1.7882 8.9133 23 6 0.3113 0.7934 9.9544 24 6 0.5515 -0.5814 9.2827 25 6 0.2741 -0.3253 7.7870 26 8 1.4777 2.0330 5.3701 27 1 -1.0502 -0.0005 0.0002 28 1 3.0097 -0.5646 -0.8581 29 1 3.0096 -0.4594 0.9187 30 1 1.5923 0.1909 -3.2613 31 1 3.4816 0.6641 2.5752 32 1 1.8123 1.2404 2.3528 33 1 2.4561 3.4547 3.2653 34 1 4.1253 2.8778 3.4873 35 1 -0.4380 1.6364 7.1957 36 1 1.9685 1.8499 9.0010 37 1 0.4334 2.7730 9.0377 38 1 -0.7537 0.9671 10.1089 39 1 0.8532 0.8624 10.8977 40 1 -0.1411 -1.3249 9.6773 41 1 1.5818 -0.9053 9.4298 42 1 -0.7526 -0.6002 7.5453 43 1 0.9685 -0.9000 7.1740 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281514679.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:12 Heat of formation + Delta-G solvation = 31.175596 kcal Electronic energy + Delta-G solvation = -25776.810233 eV Core-core repulsion = 22017.702045 eV Total energy + Delta-G solvation = -3759.108188 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.35702 -40.62174 -39.16508 -37.27120 -37.21832 -35.28157 -33.98109 -33.04414 -32.16717 -29.69195 -29.49542 -28.29458 -27.26526 -25.59942 -24.56590 -23.19656 -21.58634 -21.13302 -20.75196 -19.69355 -18.71121 -18.39476 -18.21666 -17.96720 -16.92619 -16.74051 -16.41437 -16.35547 -15.97647 -15.33229 -15.09811 -14.76064 -14.39547 -14.31089 -14.02475 -13.89924 -13.55199 -13.49941 -13.35998 -12.99959 -12.83760 -12.75373 -12.65433 -12.54276 -12.38802 -12.15827 -12.12280 -12.05227 -11.95425 -11.61303 -11.45259 -11.16767 -11.10705 -10.70823 -10.56509 -10.32045 -9.83509 -8.31945 -5.94035 0.03932 1.13527 1.23401 1.38479 1.44268 1.53341 1.86232 2.11995 2.31766 2.37133 2.63575 3.04308 3.14926 3.33437 3.57682 3.58098 3.76732 3.83301 3.85123 3.96070 4.04478 4.16498 4.34743 4.40278 4.42586 4.47126 4.48829 4.53548 4.67150 4.73386 4.78360 4.80926 4.88107 4.90449 4.92911 5.05277 5.22354 5.25458 5.30002 5.40035 5.48096 5.49498 6.05122 6.41817 7.12369 7.13468 7.19383 7.39698 7.94709 8.66178 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.027003 B = 0.002608 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.657467 B =10734.393482 C =11374.232103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.156 4.156 3 C 0.233 3.767 4 N -0.449 5.449 5 C -0.353 4.353 6 H 0.078 0.922 7 C 0.004 3.996 8 N -0.870 5.870 9 Si 0.983 3.017 10 H -0.267 1.267 11 H -0.275 1.275 12 H -0.279 1.279 13 C 0.446 3.554 14 O -0.621 6.621 15 C -0.113 4.113 16 C 0.004 3.996 17 C 0.176 3.824 18 N -0.310 5.310 19 N -0.310 5.310 20 C 0.172 3.828 21 C 0.000 4.000 22 C -0.115 4.115 23 C -0.114 4.114 24 C -0.122 4.122 25 C -0.114 4.114 26 O -0.229 6.229 27 H 0.233 0.767 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.272 0.728 31 H 0.104 0.896 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.118 0.882 35 H 0.125 0.875 36 H 0.059 0.941 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.058 0.942 42 H 0.098 0.902 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.737 -4.293 20.275 22.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C -0.157 4.157 3 C 0.110 3.890 4 N -0.167 5.167 5 C -0.481 4.481 6 H 0.096 0.904 7 C -0.200 4.200 8 N -0.506 5.506 9 Si 0.807 3.193 10 H -0.192 1.192 11 H -0.200 1.200 12 H -0.204 1.204 13 C 0.236 3.764 14 O -0.508 6.508 15 C -0.154 4.154 16 C -0.035 4.035 17 C -0.035 4.035 18 N -0.157 5.157 19 N -0.155 5.155 20 C -0.039 4.039 21 C -0.020 4.020 22 C -0.153 4.153 23 C -0.152 4.152 24 C -0.159 4.159 25 C -0.152 4.152 26 O -0.108 6.108 27 H 0.249 0.751 28 H 0.109 0.891 29 H 0.114 0.886 30 H 0.082 0.918 31 H 0.122 0.878 32 H 0.110 0.890 33 H 0.122 0.878 34 H 0.136 0.864 35 H 0.143 0.857 36 H 0.077 0.923 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.098 0.902 40 H 0.106 0.894 41 H 0.077 0.923 42 H 0.117 0.883 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.551 -4.430 20.562 22.030 hybrid contribution -0.633 0.751 -1.919 2.156 sum -7.184 -3.679 18.643 20.315 Atomic orbital electron populations 1.25141 0.96341 1.00002 1.04591 1.23402 0.94958 1.00254 0.97131 1.18290 0.84712 0.83920 1.02073 1.43856 1.55776 1.10949 1.06079 1.19528 1.29755 1.15909 0.82858 0.90406 1.25980 0.95239 0.96833 1.01921 1.70166 1.18048 1.32585 1.29805 0.85165 0.78766 0.78220 0.77189 1.19164 1.20005 1.20435 1.20561 0.83433 0.85860 0.86508 1.90503 1.52851 1.19957 1.87529 1.21412 1.03847 0.99345 0.90826 1.19809 1.04945 0.97645 0.81114 1.28090 0.78275 0.98229 0.98923 1.74386 1.27711 1.13815 0.99743 1.74261 1.02975 1.21095 1.17157 1.28850 0.97364 0.92295 0.85407 1.20863 0.91603 0.99761 0.89809 1.22528 1.01411 1.00237 0.91149 1.22494 1.02208 0.92972 0.97482 1.22365 1.02000 0.98355 0.93218 1.22259 1.03183 0.91368 0.98403 1.84830 1.35319 1.60543 1.30125 0.75080 0.89097 0.88564 0.91822 0.87763 0.88993 0.87825 0.86433 0.85741 0.92256 0.89198 0.89157 0.90213 0.89410 0.92349 0.88341 0.93099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.37 19.25 74.32 1.43 -7.94 16 2 C -0.16 -6.69 10.75 31.12 0.33 -6.35 16 3 C 0.23 9.99 4.91 84.57 0.42 10.41 16 4 N -0.45 -22.34 2.60 -645.41 -1.68 -24.02 16 5 C -0.35 -19.43 9.28 84.04 0.78 -18.65 16 6 H 0.08 4.59 7.42 -2.91 -0.02 4.56 16 7 C 0.00 0.22 4.83 84.93 0.41 0.63 16 8 N -0.87 -44.65 9.59 21.66 0.21 -44.44 16 9 Si 0.98 41.40 29.61 68.60 2.03 43.43 16 10 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 11 H -0.28 -11.07 7.11 99.48 0.71 -10.36 16 12 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 13 C 0.45 20.97 7.56 87.66 0.66 21.64 16 14 O -0.62 -33.38 15.65 -3.08 -0.05 -33.43 16 15 C -0.11 -4.00 4.29 29.84 0.13 -3.87 16 16 C 0.00 0.12 5.13 29.85 0.15 0.28 16 17 C 0.18 5.54 7.73 88.34 0.68 6.22 16 18 N -0.31 -10.53 12.22 -165.50 -2.02 -12.55 16 19 N -0.31 -9.61 12.00 -165.50 -1.99 -11.60 16 20 C 0.17 4.45 6.70 88.34 0.59 5.04 16 21 C 0.00 -0.01 3.43 -10.82 -0.04 -0.04 16 22 C -0.12 -1.56 6.36 31.69 0.20 -1.36 16 23 C -0.11 -1.06 6.91 31.91 0.22 -0.84 16 24 C -0.12 -1.39 6.83 31.67 0.22 -1.17 16 25 C -0.11 -1.63 6.45 31.32 0.20 -1.42 16 26 O -0.23 -6.66 10.87 -3.60 -0.04 -6.70 16 27 H 0.23 6.91 7.80 -4.41 -0.03 6.88 16 28 H 0.09 4.15 6.60 -2.39 -0.02 4.14 16 29 H 0.10 3.38 6.69 -2.39 -0.02 3.36 16 30 H 0.27 13.29 8.31 -92.71 -0.77 12.52 16 31 H 0.10 3.31 7.42 -2.39 -0.02 3.29 16 32 H 0.09 3.15 7.49 -2.39 -0.02 3.13 16 33 H 0.10 3.30 8.10 -2.39 -0.02 3.28 16 34 H 0.12 3.79 8.10 -2.39 -0.02 3.77 16 35 H 0.12 1.51 8.14 -2.38 -0.02 1.49 16 36 H 0.06 1.07 7.68 -2.39 -0.02 1.06 16 37 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.09 0.53 8.14 -2.38 -0.02 0.51 16 39 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 41 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.05 0.98 7.65 -2.39 -0.02 0.96 16 Total: -1.00 -69.44 364.55 3.88 -65.57 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: 1.02 Total: 21.17 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: 6.39 Total: 2.56 kcal Atomic # 7 Polarization: -87.13 SS G_CDS: -5.48 Total: -92.61 kcal Atomic # 8 Polarization: -40.04 SS G_CDS: -0.09 Total: -40.13 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.43 kcal Total: -69.44 3.88 -65.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281514679.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.741 kcal (2) G-P(sol) polarization free energy of solvation -69.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds