Wall clock time and date at job start Tue Mar 31 2020 11:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47246 * 111.35351 * 3 2 1 5 5 C 1.37094 * 120.00212 * 263.92758 * 4 3 2 6 6 H 1.08003 * 119.99971 * 199.75118 * 5 4 3 7 7 C 1.38956 * 119.99991 * 19.75464 * 5 4 3 8 8 N 1.31405 * 119.99833 * 21.74591 * 7 5 4 9 9 Si 1.86800 * 119.99723 * 201.74572 * 7 5 4 10 10 H 1.48498 * 109.47522 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46962 * 120.00254 * 9 7 5 12 12 H 1.48496 * 109.47005 * 239.99975 * 9 7 5 13 13 C 1.34779 * 119.99899 * 83.92464 * 4 3 2 14 14 O 1.21293 * 120.00189 * 179.97438 * 13 4 3 15 15 C 1.50704 * 119.99871 * 359.97438 * 13 4 3 16 16 C 1.52996 * 109.47126 * 179.97438 * 15 13 4 17 17 C 1.50698 * 109.47235 * 180.02562 * 16 15 13 18 18 N 1.31128 * 126.55637 * 90.25389 * 17 16 15 19 19 C 1.34495 * 105.61669 * 180.12198 * 18 17 16 20 20 C 1.50697 * 126.28767 * 179.89996 * 19 18 17 21 21 C 1.54888 * 110.48628 * 124.94037 * 20 19 18 22 22 C 1.54890 * 102.75083 * 156.62041 * 21 20 19 23 23 C 1.54265 * 104.19464 * 322.05849 * 22 21 20 24 24 C 1.53870 * 106.60063 * 23.60837 * 23 22 21 25 25 N 1.29948 * 107.42454 * 359.64319 * 19 18 17 26 26 O 1.21305 * 110.25119 * 0.22222 * 25 19 18 27 27 H 4.40639 * 5.51411 * 180.02562 * 4 1 2 28 28 H 1.08999 * 109.47191 * 351.35673 * 3 2 1 29 29 H 1.08998 * 109.47369 * 231.35752 * 3 2 1 30 30 H 0.97000 * 119.99977 * 180.02562 * 8 7 5 31 31 H 1.09006 * 109.46924 * 60.00125 * 15 13 4 32 32 H 1.08995 * 109.47371 * 300.00668 * 15 13 4 33 33 H 1.08998 * 109.47340 * 60.00322 * 16 15 13 34 34 H 1.09004 * 109.47265 * 300.00183 * 16 15 13 35 35 H 1.09001 * 110.53732 * 2.32781 * 20 19 18 36 36 H 1.08998 * 110.75441 * 274.93865 * 21 20 19 37 37 H 1.09002 * 110.75764 * 38.30775 * 21 20 19 38 38 H 1.08995 * 110.48755 * 203.37477 * 22 21 20 39 39 H 1.09001 * 110.48217 * 80.73440 * 22 21 20 40 40 H 1.08998 * 110.03242 * 264.32381 * 23 22 21 41 41 H 1.09002 * 110.07167 * 142.91402 * 23 22 21 42 42 H 1.08999 * 110.03384 * 240.71812 * 24 23 22 43 43 H 1.09004 * 110.03727 * 119.28495 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1341 0.5038 -1.2864 5 6 3.4814 -0.3755 -2.2792 6 1 4.1245 -0.0536 -3.0850 7 6 3.0060 -1.6808 -2.2488 8 7 1.9252 -1.9705 -1.5599 9 14 3.9034 -3.0237 -3.1873 10 1 5.0830 -2.4421 -3.8770 11 1 4.3533 -4.0743 -2.2391 12 1 2.9878 -3.6224 -4.1914 13 6 3.2417 1.8312 -1.4938 14 8 3.6462 2.2478 -2.5587 15 6 2.8592 2.7978 -0.4027 16 6 3.0747 4.2311 -0.8925 17 6 2.6929 5.1977 0.1988 18 7 3.4835 5.6789 1.1277 19 6 2.7135 6.4914 1.8732 20 6 3.1573 7.2864 3.0741 21 6 2.8260 8.7873 2.8832 22 6 2.7638 9.3115 4.3394 23 6 2.0983 8.1638 5.1265 24 6 2.3484 6.8762 4.3221 25 7 1.5180 6.4694 1.3645 26 8 1.4849 5.7322 0.4017 27 1 -1.0501 0.0001 0.0002 28 1 3.0097 -1.0152 0.1544 29 1 3.0090 0.6425 0.8026 30 1 1.5935 -2.8818 -1.5384 31 1 3.4787 2.6175 0.4759 32 1 1.8103 2.6560 -0.1428 33 1 2.4556 4.4117 -1.7712 34 1 4.1239 4.3726 -1.1520 35 1 4.2245 7.1505 3.2495 36 1 3.6164 9.2894 2.3253 37 1 1.8634 8.9104 2.3869 38 1 2.1558 10.2145 4.3941 39 1 3.7675 9.5028 4.7191 40 1 1.0273 8.3452 5.2173 41 1 2.5476 8.0791 6.1160 42 1 1.3989 6.4328 4.0224 43 1 2.9198 6.1669 4.9208 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281526096.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:09 Heat of formation + Delta-G solvation = 81.423221 kcal Electronic energy + Delta-G solvation = -25733.392150 eV Core-core repulsion = 21976.462863 eV Total energy + Delta-G solvation = -3756.929288 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -45.50639 -38.82360 -38.59580 -35.77188 -35.30960 -34.01759 -32.20603 -31.28163 -30.95713 -29.13823 -29.04987 -26.66954 -25.88897 -24.08459 -23.71715 -22.29668 -20.78904 -19.84485 -19.04709 -17.98861 -17.85635 -17.54563 -16.71614 -16.31929 -15.93282 -15.62007 -15.11010 -14.70973 -14.20707 -14.01769 -13.78114 -13.72257 -13.48579 -12.81300 -12.57530 -12.43215 -12.32338 -12.05349 -12.01483 -11.79732 -11.62620 -11.53943 -11.44596 -11.16814 -11.08897 -11.02183 -10.93618 -10.83522 -10.73134 -10.50920 -10.34326 -9.76611 -9.40657 -9.29862 -8.95650 -8.51588 -7.90985 -6.37397 -3.91575 1.20304 2.24552 2.90114 3.10902 3.24131 3.30481 3.53281 3.62156 3.85801 3.99313 4.00797 4.15689 4.28719 4.39566 4.53955 4.80428 4.98786 5.01741 5.10645 5.15589 5.17241 5.21128 5.31944 5.32699 5.38714 5.43357 5.54017 5.58068 5.61977 5.75555 5.83895 5.86339 5.87769 5.96380 6.00583 6.04771 6.16521 6.23009 6.30070 6.66216 6.98217 7.52714 7.99479 8.23653 8.35983 8.77457 9.07357 9.29539 9.82753 10.63140 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.026479 B = 0.002550 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.192490 B =10976.473570 C =11403.864360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.117 4.117 3 C 0.231 3.769 4 N -0.436 5.436 5 C -0.317 4.317 6 H 0.105 0.895 7 C 0.032 3.968 8 N -0.858 5.858 9 Si 0.920 3.080 10 H -0.267 1.267 11 H -0.280 1.280 12 H -0.283 1.283 13 C 0.454 3.546 14 O -0.583 6.583 15 C -0.130 4.130 16 C -0.010 4.010 17 C 0.198 3.802 18 N -0.486 5.486 19 C 0.175 3.825 20 C -0.002 4.002 21 C -0.116 4.116 22 C -0.122 4.122 23 C -0.122 4.122 24 C -0.117 4.117 25 N -0.387 5.387 26 O 0.075 5.925 27 H 0.199 0.801 28 H 0.107 0.893 29 H 0.063 0.937 30 H 0.268 0.732 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.108 0.892 34 H 0.117 0.883 35 H 0.105 0.895 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.167 15.074 12.480 19.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.274 4.274 2 C -0.119 4.119 3 C 0.108 3.892 4 N -0.154 5.154 5 C -0.444 4.444 6 H 0.123 0.877 7 C -0.172 4.172 8 N -0.496 5.496 9 Si 0.746 3.254 10 H -0.191 1.191 11 H -0.206 1.206 12 H -0.209 1.209 13 C 0.242 3.758 14 O -0.467 6.467 15 C -0.171 4.171 16 C -0.049 4.049 17 C -0.022 4.022 18 N -0.219 5.219 19 C -0.098 4.098 20 C -0.022 4.022 21 C -0.155 4.155 22 C -0.160 4.160 23 C -0.160 4.160 24 C -0.155 4.155 25 N -0.096 5.096 26 O 0.017 5.983 27 H 0.216 0.784 28 H 0.125 0.875 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.127 0.873 34 H 0.135 0.865 35 H 0.123 0.877 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.002 15.593 12.521 19.998 hybrid contribution -0.140 -1.143 -0.520 1.263 sum -0.138 14.450 12.002 18.785 Atomic orbital electron populations 1.24283 0.95381 1.04953 1.02824 1.23115 0.94318 0.96646 0.97785 1.18232 0.84374 1.01163 0.85443 1.43671 1.55621 1.04022 1.12099 1.19684 1.28404 0.90319 1.05993 0.87711 1.25320 0.94963 0.99049 0.97909 1.70094 1.17852 1.20329 1.41302 0.85974 0.79783 0.80450 0.79166 1.19143 1.20616 1.20889 1.19751 0.84682 0.82927 0.88423 1.90540 1.51372 1.77312 1.27512 1.21564 1.03548 0.92321 0.99692 1.20034 1.05145 0.88717 0.91051 1.29108 0.80209 0.95770 0.97093 1.71942 1.31266 1.12657 1.06072 1.25664 0.86100 0.98152 0.99860 1.20404 1.01220 0.92931 0.87666 1.22597 1.02440 0.92893 0.97524 1.22342 1.01060 0.98099 0.94503 1.22117 1.01069 0.94055 0.98751 1.22225 1.00313 0.98190 0.94798 1.74546 1.21868 1.12323 1.00842 1.85315 1.34186 1.43171 1.35607 0.78373 0.87519 0.91869 0.92145 0.89577 0.89422 0.87322 0.86483 0.87693 0.90954 0.90661 0.91232 0.91218 0.91532 0.91447 0.91171 0.90960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.16 19.25 29.55 0.57 -4.59 16 2 C -0.12 -2.54 10.75 -37.12 -0.40 -2.93 16 3 C 0.23 4.89 4.91 -6.83 -0.03 4.86 16 4 N -0.44 -10.49 2.60 -117.93 -0.31 -10.80 16 5 C -0.32 -8.39 9.28 -14.93 -0.14 -8.52 16 6 H 0.11 2.92 7.42 -52.48 -0.39 2.53 16 7 C 0.03 0.82 4.83 -17.47 -0.08 0.74 16 8 N -0.86 -22.00 9.59 55.50 0.53 -21.46 16 9 Si 0.92 19.93 29.61 -169.99 -5.03 14.89 16 10 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 11 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 12 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 13 C 0.45 10.22 7.56 -10.98 -0.08 10.13 16 14 O -0.58 -14.85 15.65 5.55 0.09 -14.77 16 15 C -0.13 -2.21 4.29 -27.88 -0.12 -2.33 16 16 C -0.01 -0.15 5.13 -27.89 -0.14 -0.30 16 17 C 0.20 2.93 7.77 -13.06 -0.10 2.83 16 18 N -0.49 -7.36 11.55 -9.86 -0.11 -7.48 16 19 C 0.18 2.43 6.73 -156.37 -1.05 1.38 16 20 C 0.00 -0.02 3.40 -90.11 -0.31 -0.33 16 21 C -0.12 -1.04 6.32 -24.74 -0.16 -1.19 16 22 C -0.12 -0.85 6.83 -25.07 -0.17 -1.02 16 23 C -0.12 -0.89 6.80 -25.62 -0.17 -1.07 16 24 C -0.12 -1.09 6.36 -25.61 -0.16 -1.25 16 25 N -0.39 -5.76 11.84 30.90 0.37 -5.40 16 26 O 0.07 1.13 11.31 18.08 0.20 1.33 16 27 H 0.20 3.28 7.80 -54.09 -0.42 2.86 16 28 H 0.11 2.38 6.60 -51.93 -0.34 2.04 16 29 H 0.06 1.11 6.70 -51.93 -0.35 0.76 16 30 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 31 H 0.09 1.33 7.42 -51.93 -0.39 0.95 16 32 H 0.09 1.47 7.49 -51.93 -0.39 1.08 16 33 H 0.11 1.59 8.10 -51.93 -0.42 1.17 16 34 H 0.12 1.75 8.10 -51.93 -0.42 1.33 16 35 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.77 7.89 -51.93 -0.41 0.36 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.76 7.72 -51.93 -0.40 0.36 16 43 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 364.21 15.07 5.49 5.49 Total: -1.00 -30.46 364.21 -7.35 -37.82 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -6.02 Total: 3.95 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -2.56 Total: -3.59 kcal Atomic # 7 Polarization: -45.61 SS G_CDS: 0.48 Total: -45.13 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: 0.29 Total: -13.43 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.03 Total: 14.89 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.46 -7.35 -37.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281526096.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.241 kcal (2) G-P(sol) polarization free energy of solvation -30.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds