Wall clock time and date at job start Tue Mar 31 2020 11:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47246 * 111.35351 * 3 2 1 5 5 C 1.37094 * 120.00212 * 263.92758 * 4 3 2 6 6 H 1.08003 * 119.99971 * 199.75118 * 5 4 3 7 7 C 1.38956 * 119.99991 * 19.75464 * 5 4 3 8 8 N 1.31405 * 119.99833 * 21.74591 * 7 5 4 9 9 Si 1.86800 * 119.99723 * 201.74572 * 7 5 4 10 10 H 1.48498 * 109.47522 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46962 * 120.00254 * 9 7 5 12 12 H 1.48496 * 109.47005 * 239.99975 * 9 7 5 13 13 C 1.34779 * 119.99899 * 83.92464 * 4 3 2 14 14 O 1.21293 * 120.00189 * 179.97438 * 13 4 3 15 15 C 1.50704 * 119.99871 * 359.97438 * 13 4 3 16 16 C 1.52996 * 109.47126 * 179.97438 * 15 13 4 17 17 C 1.50698 * 109.47235 * 180.02562 * 16 15 13 18 18 N 1.31128 * 126.55637 * 90.25389 * 17 16 15 19 19 C 1.34495 * 105.61669 * 180.12198 * 18 17 16 20 20 C 1.50697 * 126.28767 * 179.89996 * 19 18 17 21 21 C 1.54888 * 110.48628 * 124.94037 * 20 19 18 22 22 C 1.54890 * 102.75083 * 156.62041 * 21 20 19 23 23 C 1.54265 * 104.19464 * 322.05849 * 22 21 20 24 24 C 1.53870 * 106.60063 * 23.60837 * 23 22 21 25 25 N 1.29948 * 107.42454 * 359.64319 * 19 18 17 26 26 O 1.21305 * 110.25119 * 0.22222 * 25 19 18 27 27 H 4.40639 * 5.51411 * 180.02562 * 4 1 2 28 28 H 1.08999 * 109.47191 * 351.35673 * 3 2 1 29 29 H 1.08998 * 109.47369 * 231.35752 * 3 2 1 30 30 H 0.97000 * 119.99977 * 180.02562 * 8 7 5 31 31 H 1.09006 * 109.46924 * 60.00125 * 15 13 4 32 32 H 1.08995 * 109.47371 * 300.00668 * 15 13 4 33 33 H 1.08998 * 109.47340 * 60.00322 * 16 15 13 34 34 H 1.09004 * 109.47265 * 300.00183 * 16 15 13 35 35 H 1.09001 * 110.53732 * 2.32781 * 20 19 18 36 36 H 1.08998 * 110.75441 * 274.93865 * 21 20 19 37 37 H 1.09002 * 110.75764 * 38.30775 * 21 20 19 38 38 H 1.08995 * 110.48755 * 203.37477 * 22 21 20 39 39 H 1.09001 * 110.48217 * 80.73440 * 22 21 20 40 40 H 1.08998 * 110.03242 * 264.32381 * 23 22 21 41 41 H 1.09002 * 110.07167 * 142.91402 * 23 22 21 42 42 H 1.08999 * 110.03384 * 240.71812 * 24 23 22 43 43 H 1.09004 * 110.03727 * 119.28495 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1341 0.5038 -1.2864 5 6 3.4814 -0.3755 -2.2792 6 1 4.1245 -0.0536 -3.0850 7 6 3.0060 -1.6808 -2.2488 8 7 1.9252 -1.9705 -1.5599 9 14 3.9034 -3.0237 -3.1873 10 1 5.0830 -2.4421 -3.8770 11 1 4.3533 -4.0743 -2.2391 12 1 2.9878 -3.6224 -4.1914 13 6 3.2417 1.8312 -1.4938 14 8 3.6462 2.2478 -2.5587 15 6 2.8592 2.7978 -0.4027 16 6 3.0747 4.2311 -0.8925 17 6 2.6929 5.1977 0.1988 18 7 3.4835 5.6789 1.1277 19 6 2.7135 6.4914 1.8732 20 6 3.1573 7.2864 3.0741 21 6 2.8260 8.7873 2.8832 22 6 2.7638 9.3115 4.3394 23 6 2.0983 8.1638 5.1265 24 6 2.3484 6.8762 4.3221 25 7 1.5180 6.4694 1.3645 26 8 1.4849 5.7322 0.4017 27 1 -1.0501 0.0001 0.0002 28 1 3.0097 -1.0152 0.1544 29 1 3.0090 0.6425 0.8026 30 1 1.5935 -2.8818 -1.5384 31 1 3.4787 2.6175 0.4759 32 1 1.8103 2.6560 -0.1428 33 1 2.4556 4.4117 -1.7712 34 1 4.1239 4.3726 -1.1520 35 1 4.2245 7.1505 3.2495 36 1 3.6164 9.2894 2.3253 37 1 1.8634 8.9104 2.3869 38 1 2.1558 10.2145 4.3941 39 1 3.7675 9.5028 4.7191 40 1 1.0273 8.3452 5.2173 41 1 2.5476 8.0791 6.1160 42 1 1.3989 6.4328 4.0224 43 1 2.9198 6.1669 4.9208 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281526096.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:08 Heat of formation + Delta-G solvation = 64.047985 kcal Electronic energy + Delta-G solvation = -25734.145597 eV Core-core repulsion = 21976.462863 eV Total energy + Delta-G solvation = -3757.682734 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -46.64997 -40.58653 -39.33300 -37.24793 -36.75042 -35.30413 -33.99282 -33.01346 -32.23577 -29.95801 -29.71022 -28.38967 -27.45052 -25.67996 -24.82121 -23.40645 -21.40492 -20.90774 -20.57260 -19.66575 -19.11343 -18.67344 -18.40600 -17.91693 -16.79040 -16.64574 -16.50755 -16.33051 -15.95485 -15.36697 -14.97020 -14.59973 -14.42066 -14.37046 -13.99741 -13.98011 -13.47077 -13.44278 -13.41580 -13.27642 -12.77768 -12.75026 -12.48070 -12.23985 -12.19242 -12.12090 -12.10839 -12.07319 -12.00053 -11.69140 -11.36134 -11.15200 -11.07662 -10.88741 -10.63942 -10.32174 -9.80143 -8.29632 -5.91124 0.04030 1.13473 1.37019 1.45654 1.58049 1.71113 1.90256 2.15655 2.34558 2.39943 2.52309 2.96718 3.07190 3.22763 3.60214 3.66979 3.71228 3.84055 3.88557 4.03443 4.05329 4.24118 4.42735 4.45837 4.47752 4.50957 4.53228 4.68631 4.70643 4.73996 4.79026 4.86270 4.93110 4.96916 4.97910 5.03562 5.18829 5.22140 5.29748 5.43291 5.44249 5.51061 6.08574 6.44842 7.09548 7.15552 7.16844 7.43592 7.98558 8.68808 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.026479 B = 0.002550 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.192490 B =10976.473570 C =11403.864360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.154 4.154 3 C 0.233 3.767 4 N -0.451 5.451 5 C -0.349 4.349 6 H 0.078 0.922 7 C 0.003 3.997 8 N -0.871 5.871 9 Si 0.981 3.019 10 H -0.273 1.273 11 H -0.267 1.267 12 H -0.283 1.283 13 C 0.448 3.552 14 O -0.620 6.620 15 C -0.114 4.114 16 C 0.000 4.000 17 C 0.202 3.798 18 N -0.498 5.498 19 C 0.178 3.822 20 C -0.008 4.008 21 C -0.115 4.115 22 C -0.116 4.116 23 C -0.119 4.119 24 C -0.115 4.115 25 N -0.400 5.400 26 O 0.066 5.934 27 H 0.230 0.770 28 H 0.090 0.910 29 H 0.099 0.901 30 H 0.271 0.729 31 H 0.106 0.894 32 H 0.094 0.906 33 H 0.110 0.890 34 H 0.118 0.882 35 H 0.114 0.886 36 H 0.077 0.923 37 H 0.059 0.941 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.065 0.935 41 H 0.083 0.917 42 H 0.050 0.950 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.091 15.708 14.202 21.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C -0.156 4.156 3 C 0.111 3.889 4 N -0.169 5.169 5 C -0.477 4.477 6 H 0.096 0.904 7 C -0.201 4.201 8 N -0.507 5.507 9 Si 0.805 3.195 10 H -0.197 1.197 11 H -0.192 1.192 12 H -0.209 1.209 13 C 0.238 3.762 14 O -0.507 6.507 15 C -0.155 4.155 16 C -0.040 4.040 17 C -0.018 4.018 18 N -0.232 5.232 19 C -0.095 4.095 20 C -0.028 4.028 21 C -0.153 4.153 22 C -0.153 4.153 23 C -0.157 4.157 24 C -0.154 4.154 25 N -0.110 5.110 26 O 0.011 5.989 27 H 0.247 0.753 28 H 0.108 0.892 29 H 0.117 0.883 30 H 0.081 0.919 31 H 0.124 0.876 32 H 0.112 0.888 33 H 0.128 0.872 34 H 0.136 0.864 35 H 0.132 0.868 36 H 0.096 0.904 37 H 0.078 0.922 38 H 0.098 0.902 39 H 0.102 0.898 40 H 0.084 0.916 41 H 0.102 0.898 42 H 0.069 0.931 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.094 16.219 14.262 21.598 hybrid contribution -0.158 -1.309 -1.053 1.687 sum -0.252 14.910 13.210 19.921 Atomic orbital electron populations 1.25119 0.96356 1.03490 1.01307 1.23418 0.94981 0.98024 0.99174 1.18289 0.84560 1.00985 0.85082 1.43868 1.55896 1.04448 1.12651 1.19578 1.29475 0.91802 1.06809 0.90402 1.25962 0.95286 1.00167 0.98654 1.70179 1.18169 1.20716 1.41683 0.85070 0.78337 0.77971 0.78082 1.19711 1.19231 1.20904 1.20596 0.83238 0.83206 0.89166 1.90507 1.52736 1.77996 1.29490 1.21414 1.04046 0.91841 0.98209 1.19873 1.05312 0.87641 0.91141 1.28926 0.80267 0.95733 0.96899 1.71964 1.31653 1.13153 1.06405 1.26291 0.85551 0.97521 1.00153 1.20685 1.01867 0.93438 0.86790 1.22594 1.01723 0.91958 0.99048 1.22343 1.02107 0.98166 0.92726 1.22121 1.01320 0.93002 0.99242 1.22227 0.99174 0.99405 0.94581 1.74552 1.22529 1.12824 1.01103 1.85304 1.34261 1.43441 1.35919 0.75292 0.89209 0.88342 0.91927 0.87586 0.88782 0.87155 0.86386 0.86752 0.90393 0.92245 0.90220 0.89765 0.91601 0.89793 0.93137 0.90202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.46 19.25 74.32 1.43 -8.02 16 2 C -0.15 -6.56 10.75 31.12 0.33 -6.22 16 3 C 0.23 9.80 4.91 84.57 0.42 10.22 16 4 N -0.45 -21.94 2.60 -645.41 -1.68 -23.62 16 5 C -0.35 -18.94 9.28 84.04 0.78 -18.16 16 6 H 0.08 4.54 7.42 -2.91 -0.02 4.52 16 7 C 0.00 0.16 4.83 84.93 0.41 0.57 16 8 N -0.87 -44.46 9.59 21.66 0.21 -44.26 16 9 Si 0.98 41.12 29.61 68.60 2.03 43.16 16 10 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 11 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 12 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 13 C 0.45 20.35 7.56 87.66 0.66 21.02 16 14 O -0.62 -32.40 15.65 -3.07 -0.05 -32.45 16 15 C -0.11 -3.78 4.29 29.85 0.13 -3.65 16 16 C 0.00 -0.01 5.13 29.85 0.15 0.14 16 17 C 0.20 5.81 7.77 88.38 0.69 6.50 16 18 N -0.50 -14.56 11.55 -303.17 -3.50 -18.06 16 19 C 0.18 4.76 6.73 138.46 0.93 5.69 16 20 C -0.01 -0.15 3.40 -10.46 -0.04 -0.19 16 21 C -0.11 -1.87 6.32 31.89 0.20 -1.67 16 22 C -0.12 -1.31 6.83 31.67 0.22 -1.09 16 23 C -0.12 -1.47 6.80 31.32 0.21 -1.25 16 24 C -0.12 -1.96 6.36 31.32 0.20 -1.76 16 25 N -0.40 -11.67 11.84 -60.29 -0.71 -12.39 16 26 O 0.07 1.95 11.31 74.77 0.85 2.80 16 27 H 0.23 6.96 7.80 -4.41 -0.03 6.93 16 28 H 0.09 4.04 6.60 -2.39 -0.02 4.02 16 29 H 0.10 3.32 6.70 -2.39 -0.02 3.30 16 30 H 0.27 13.13 8.31 -92.71 -0.77 12.36 16 31 H 0.11 3.10 7.42 -2.38 -0.02 3.08 16 32 H 0.09 3.04 7.49 -2.39 -0.02 3.03 16 33 H 0.11 3.21 8.10 -2.39 -0.02 3.19 16 34 H 0.12 3.47 8.10 -2.39 -0.02 3.46 16 35 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.06 1.16 7.89 -2.39 -0.02 1.14 16 38 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.05 1.06 7.72 -2.39 -0.02 1.04 16 43 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 Total: -1.00 -66.02 364.21 4.89 -61.14 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: 1.02 Total: 21.57 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: 6.73 Total: 2.11 kcal Atomic # 7 Polarization: -92.64 SS G_CDS: -5.68 Total: -98.32 kcal Atomic # 8 Polarization: -30.45 SS G_CDS: 0.80 Total: -29.65 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.16 kcal Total: -66.02 4.89 -61.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281526096.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.186 kcal (2) G-P(sol) polarization free energy of solvation -66.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds