Wall clock time and date at job start Tue Mar 31 2020 11:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47230 * 2 1 4 4 N 1.46505 * 109.46912 * 119.99811 * 2 1 3 5 5 C 1.35851 * 126.13468 * 300.02548 * 4 2 1 6 6 N 1.30176 * 109.00108 * 179.97438 * 5 4 2 7 7 C 1.35755 * 108.86528 * 0.02562 * 6 5 4 8 8 C 1.47335 * 126.23309 * 179.97438 * 7 6 5 9 9 O 1.21628 * 119.99613 * 173.77376 * 8 7 6 10 10 N 1.34775 * 119.99771 * 353.77971 * 8 7 6 11 11 C 1.46499 * 120.00224 * 4.22510 * 10 8 7 12 12 C 1.50700 * 109.47178 * 83.44026 * 11 10 8 13 13 H 1.07999 * 119.99480 * 359.97438 * 12 11 10 14 14 C 1.37872 * 119.99870 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00452 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99794 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47388 * 89.99832 * 16 14 12 18 18 H 1.48503 * 109.47445 * 210.00073 * 16 14 12 19 19 H 1.48500 * 109.47147 * 330.00012 * 16 14 12 20 20 C 1.46500 * 119.99690 * 184.22640 * 10 8 7 21 21 C 1.50702 * 109.46894 * 94.87206 * 20 10 8 22 22 C 1.34516 * 125.78764 * 89.71767 * 21 20 10 23 23 C 1.41389 * 106.83892 * 179.88702 * 22 21 20 24 24 C 1.34515 * 106.84199 * 0.37335 * 23 22 21 25 25 O 1.34302 * 108.41951 * 359.76854 * 24 23 22 26 26 C 1.35379 * 126.13426 * 119.71133 * 4 2 1 27 27 H 1.09009 * 109.47133 * 300.00451 * 1 2 3 28 28 H 1.08994 * 109.47233 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47053 * 59.99957 * 1 2 3 30 30 H 1.08995 * 109.47320 * 239.99639 * 2 1 3 31 31 H 1.09007 * 109.47063 * 179.97438 * 3 2 1 32 32 H 1.08992 * 109.47026 * 299.99836 * 3 2 1 33 33 H 1.09000 * 109.47366 * 60.00341 * 3 2 1 34 34 H 1.08000 * 125.49782 * 359.96532 * 5 4 2 35 35 H 1.08999 * 109.47073 * 203.44454 * 11 10 8 36 36 H 1.09003 * 109.47185 * 323.44039 * 11 10 8 37 37 H 0.96995 * 120.00188 * 180.02562 * 15 14 12 38 38 H 1.08996 * 109.47599 * 214.87006 * 20 10 8 39 39 H 1.08994 * 109.47188 * 334.87677 * 20 10 8 40 40 H 1.07995 * 126.58307 * 0.02562 * 22 21 20 41 41 H 1.08000 * 126.57894 * 180.16196 * 23 22 21 42 42 H 1.07997 * 125.78961 * 179.75055 * 24 23 22 43 43 H 1.07999 * 126.56526 * 0.02562 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7677 -0.3370 2.4838 6 7 2.3627 -1.1793 3.2781 7 6 3.0168 -2.1028 2.5282 8 6 3.8152 -3.2313 3.0379 9 8 4.2611 -4.0585 2.2656 10 7 4.0514 -3.3470 4.3597 11 6 3.4382 -2.4044 5.2987 12 6 2.0376 -2.8570 5.6221 13 1 1.6436 -3.7566 5.1728 14 6 1.2594 -2.1227 6.4916 15 7 1.7390 -1.0270 7.0383 16 14 -0.4764 -2.6842 6.8930 17 1 -0.4450 -3.5842 8.0738 18 1 -1.3221 -1.5013 7.1947 19 1 -1.0423 -3.4134 5.7298 20 6 4.9214 -4.4154 4.8575 21 6 6.3243 -3.8880 5.0156 22 6 6.8288 -3.3140 6.1226 23 6 8.1703 -2.9741 5.8327 24 6 8.4028 -3.3534 4.5632 25 8 7.2812 -3.9063 4.0733 26 6 2.7953 -1.7990 1.2169 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 3.1301 1.4424 0.0005 32 1 1.6767 1.9562 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.1711 0.5068 2.7976 35 1 4.0287 -2.3675 6.2141 36 1 3.4045 -1.4125 4.8479 37 1 1.1916 -0.5106 7.6503 38 1 4.5534 -4.7637 5.8225 39 1 4.9223 -5.2432 4.1486 40 1 6.3096 -3.1469 7.0547 41 1 8.8724 -2.4980 6.5010 42 1 9.3334 -3.2333 4.0286 43 1 3.1704 -2.3378 0.3593 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281545245.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:31 Heat of formation + Delta-G solvation = 58.074659 kcal Electronic energy + Delta-G solvation = -26940.941760 eV Core-core repulsion = 23183.000003 eV Total energy + Delta-G solvation = -3757.941757 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.08772 -41.68634 -38.56706 -35.83180 -34.98128 -32.61790 -32.30276 -30.95941 -30.12286 -28.85809 -27.52508 -27.04706 -25.49974 -23.00761 -22.87715 -21.82454 -21.23601 -20.06383 -19.99597 -18.32156 -16.99254 -16.94048 -16.19071 -15.82953 -15.61602 -15.14216 -15.05882 -14.54293 -14.35913 -14.15794 -13.73439 -13.51333 -13.45309 -13.00328 -12.64749 -12.49000 -12.37739 -12.32732 -12.26058 -12.24073 -11.92900 -11.56591 -11.45288 -11.24515 -11.10564 -10.77395 -10.60308 -10.01611 -9.59974 -9.47115 -9.26456 -9.18712 -8.86106 -8.21102 -8.06714 -8.02379 -7.54427 -5.85644 -3.85027 2.10235 2.19947 2.93899 3.02423 3.15927 3.36936 3.43225 3.47404 3.49293 4.19443 4.39159 4.42921 4.58376 4.72087 4.81189 5.06054 5.13498 5.17573 5.27518 5.42628 5.44501 5.46223 5.48082 5.50288 5.57078 5.69288 5.82262 5.86843 5.91881 6.08067 6.16530 6.21088 6.38733 6.51664 6.57986 6.90546 6.95242 7.00971 7.47240 7.60109 7.68411 8.00973 8.08164 8.42740 8.46027 8.60375 9.11377 9.20386 9.75554 11.23023 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.008922 B = 0.005646 C = 0.003901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3137.487154 B = 4957.839232 C = 7175.844679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.128 3.872 3 C -0.162 4.162 4 N -0.458 5.458 5 C 0.165 3.835 6 N -0.388 5.388 7 C -0.043 4.043 8 C 0.603 3.397 9 O -0.577 6.577 10 N -0.580 5.580 11 C 0.230 3.770 12 C -0.500 4.500 13 H 0.050 0.950 14 C 0.070 3.930 15 N -0.891 5.891 16 Si 0.885 3.115 17 H -0.284 1.284 18 H -0.289 1.289 19 H -0.278 1.278 20 C 0.192 3.808 21 C -0.013 4.013 22 C -0.201 4.201 23 C -0.215 4.215 24 C -0.055 4.055 25 O -0.170 6.170 26 C 0.011 3.989 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.097 0.903 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.199 0.801 35 H 0.024 0.976 36 H 0.083 0.917 37 H 0.257 0.743 38 H 0.110 0.890 39 H 0.092 0.908 40 H 0.149 0.851 41 H 0.143 0.857 42 H 0.195 0.805 43 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.860 3.673 -11.452 12.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.024 3.976 3 C -0.220 4.220 4 N -0.143 5.143 5 C -0.118 4.118 6 N -0.104 5.104 7 C -0.173 4.173 8 C 0.391 3.609 9 O -0.458 6.458 10 N -0.309 5.309 11 C 0.111 3.889 12 C -0.539 4.539 13 H 0.068 0.932 14 C -0.131 4.131 15 N -0.531 5.531 16 Si 0.714 3.286 17 H -0.210 1.210 18 H -0.215 1.215 19 H -0.203 1.203 20 C 0.068 3.932 21 C -0.065 4.065 22 C -0.221 4.221 23 C -0.235 4.235 24 C -0.124 4.124 25 O -0.065 6.065 26 C -0.127 4.127 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.115 0.885 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.215 0.785 35 H 0.042 0.958 36 H 0.100 0.900 37 H 0.067 0.933 38 H 0.128 0.872 39 H 0.110 0.890 40 H 0.167 0.833 41 H 0.161 0.839 42 H 0.212 0.788 43 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 3.916 3.369 -11.207 12.340 hybrid contribution -1.023 0.069 -0.222 1.049 sum 2.893 3.439 -11.429 12.280 Atomic orbital electron populations 1.22176 0.93336 1.03366 1.03235 1.21413 0.95448 0.93982 0.86729 1.22166 1.02210 0.94376 1.03254 1.45702 1.38587 1.22057 1.07925 1.25345 1.05232 1.02993 0.78205 1.71426 1.07645 1.01950 1.29408 1.20487 1.06740 1.00271 0.89851 1.17019 0.78483 0.83218 0.82131 1.90681 1.54822 1.43102 1.57221 1.48193 1.44803 1.31092 1.06790 1.19964 0.91840 0.89902 0.87213 1.21234 0.98437 1.08909 1.25294 0.93199 1.24711 0.97347 0.94819 0.96207 1.69935 1.36659 1.15572 1.30962 0.86727 0.85571 0.77961 0.78386 1.21035 1.21465 1.20334 1.19730 0.80631 0.90658 1.02152 1.23270 0.91764 1.04013 0.87426 1.21678 0.95225 1.04728 1.00449 1.21785 0.97513 1.07116 0.97044 1.23920 0.90382 1.02673 0.95378 1.84083 1.19373 1.62906 1.40160 1.22352 0.99471 0.91397 0.99460 0.91362 0.91639 0.90777 0.88513 0.91710 0.90767 0.91374 0.78482 0.95786 0.89991 0.93315 0.87218 0.88982 0.83298 0.83933 0.78794 0.80570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 9.24 37.16 0.34 -1.05 16 2 C 0.13 1.22 3.57 -67.93 -0.24 0.98 16 3 C -0.16 -1.31 9.24 37.16 0.34 -0.97 16 4 N -0.46 -6.61 2.59 -111.25 -0.29 -6.89 16 5 C 0.16 2.85 11.53 -89.90 -1.04 1.81 16 6 N -0.39 -8.57 7.08 -11.03 -0.08 -8.65 16 7 C -0.04 -0.94 6.64 -83.09 -0.55 -1.49 16 8 C 0.60 14.13 7.60 -12.56 -0.10 14.03 16 9 O -0.58 -13.95 16.38 5.25 0.09 -13.86 16 10 N -0.58 -13.44 2.46 -177.74 -0.44 -13.88 16 11 C 0.23 5.88 4.78 -5.19 -0.02 5.86 16 12 C -0.50 -13.69 8.40 -34.44 -0.29 -13.98 16 13 H 0.05 1.42 7.81 -52.49 -0.41 1.01 16 14 C 0.07 1.94 5.46 -17.82 -0.10 1.84 16 15 N -0.89 -25.42 13.29 55.43 0.74 -24.68 16 16 Si 0.88 21.60 29.54 -169.99 -5.02 16.58 16 17 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 C 0.19 3.86 5.99 -5.19 -0.03 3.83 16 21 C -0.01 -0.25 6.90 -35.62 -0.25 -0.50 16 22 C -0.20 -3.60 10.81 -39.70 -0.43 -4.02 16 23 C -0.22 -3.33 10.91 -39.70 -0.43 -3.76 16 24 C -0.06 -0.84 12.09 29.42 0.36 -0.48 16 25 O -0.17 -3.21 10.65 5.70 0.06 -3.15 16 26 C 0.01 0.19 11.22 -16.64 -0.19 0.01 16 27 H 0.07 0.61 7.94 -51.92 -0.41 0.20 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.10 0.79 8.07 -51.93 -0.42 0.37 16 31 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.58 7.94 -51.93 -0.41 0.16 16 34 H 0.20 2.85 8.06 -52.49 -0.42 2.43 16 35 H 0.02 0.64 8.02 -51.93 -0.42 0.23 16 36 H 0.08 2.24 5.29 -51.93 -0.27 1.97 16 37 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 38 H 0.11 2.04 8.11 -51.93 -0.42 1.62 16 39 H 0.09 1.82 7.23 -51.93 -0.38 1.44 16 40 H 0.15 2.59 8.06 -52.49 -0.42 2.17 16 41 H 0.14 1.80 8.06 -52.49 -0.42 1.37 16 42 H 0.20 2.06 8.06 -52.49 -0.42 1.64 16 43 H 0.18 2.61 8.06 -52.49 -0.42 2.19 16 LS Contribution 369.25 15.07 5.56 5.56 Total: -1.00 -34.37 369.25 -8.08 -42.45 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -6.08 Total: 4.41 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: -2.62 Total: 2.10 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: -0.07 Total: -54.10 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: 0.15 Total: -17.01 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.37 -8.08 -42.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281545245.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.526 kcal (2) G-P(sol) polarization free energy of solvation -34.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds