Wall clock time and date at job start Tue Mar 31 2020 11:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47230 * 2 1 4 4 N 1.46505 * 109.46912 * 119.99811 * 2 1 3 5 5 C 1.35851 * 126.13468 * 300.02548 * 4 2 1 6 6 N 1.30176 * 109.00108 * 179.97438 * 5 4 2 7 7 C 1.35755 * 108.86528 * 0.02562 * 6 5 4 8 8 C 1.47335 * 126.23309 * 179.97438 * 7 6 5 9 9 O 1.21628 * 119.99613 * 173.77376 * 8 7 6 10 10 N 1.34775 * 119.99771 * 353.77971 * 8 7 6 11 11 C 1.46499 * 120.00224 * 4.22510 * 10 8 7 12 12 C 1.50700 * 109.47178 * 83.44026 * 11 10 8 13 13 H 1.07999 * 119.99480 * 359.97438 * 12 11 10 14 14 C 1.37872 * 119.99870 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00452 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99794 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47388 * 89.99832 * 16 14 12 18 18 H 1.48503 * 109.47445 * 210.00073 * 16 14 12 19 19 H 1.48500 * 109.47147 * 330.00012 * 16 14 12 20 20 C 1.46500 * 119.99690 * 184.22640 * 10 8 7 21 21 C 1.50702 * 109.46894 * 94.87206 * 20 10 8 22 22 C 1.34516 * 125.78764 * 89.71767 * 21 20 10 23 23 C 1.41389 * 106.83892 * 179.88702 * 22 21 20 24 24 C 1.34515 * 106.84199 * 0.37335 * 23 22 21 25 25 O 1.34302 * 108.41951 * 359.76854 * 24 23 22 26 26 C 1.35379 * 126.13426 * 119.71133 * 4 2 1 27 27 H 1.09009 * 109.47133 * 300.00451 * 1 2 3 28 28 H 1.08994 * 109.47233 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47053 * 59.99957 * 1 2 3 30 30 H 1.08995 * 109.47320 * 239.99639 * 2 1 3 31 31 H 1.09007 * 109.47063 * 179.97438 * 3 2 1 32 32 H 1.08992 * 109.47026 * 299.99836 * 3 2 1 33 33 H 1.09000 * 109.47366 * 60.00341 * 3 2 1 34 34 H 1.08000 * 125.49782 * 359.96532 * 5 4 2 35 35 H 1.08999 * 109.47073 * 203.44454 * 11 10 8 36 36 H 1.09003 * 109.47185 * 323.44039 * 11 10 8 37 37 H 0.96995 * 120.00188 * 180.02562 * 15 14 12 38 38 H 1.08996 * 109.47599 * 214.87006 * 20 10 8 39 39 H 1.08994 * 109.47188 * 334.87677 * 20 10 8 40 40 H 1.07995 * 126.58307 * 0.02562 * 22 21 20 41 41 H 1.08000 * 126.57894 * 180.16196 * 23 22 21 42 42 H 1.07997 * 125.78961 * 179.75055 * 24 23 22 43 43 H 1.07999 * 126.56526 * 0.02562 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7677 -0.3370 2.4838 6 7 2.3627 -1.1793 3.2781 7 6 3.0168 -2.1028 2.5282 8 6 3.8152 -3.2313 3.0379 9 8 4.2611 -4.0585 2.2656 10 7 4.0514 -3.3470 4.3597 11 6 3.4382 -2.4044 5.2987 12 6 2.0376 -2.8570 5.6221 13 1 1.6436 -3.7566 5.1728 14 6 1.2594 -2.1227 6.4916 15 7 1.7390 -1.0270 7.0383 16 14 -0.4764 -2.6842 6.8930 17 1 -0.4450 -3.5842 8.0738 18 1 -1.3221 -1.5013 7.1947 19 1 -1.0423 -3.4134 5.7298 20 6 4.9214 -4.4154 4.8575 21 6 6.3243 -3.8880 5.0156 22 6 6.8288 -3.3140 6.1226 23 6 8.1703 -2.9741 5.8327 24 6 8.4028 -3.3534 4.5632 25 8 7.2812 -3.9063 4.0733 26 6 2.7953 -1.7990 1.2169 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 3.1301 1.4424 0.0005 32 1 1.6767 1.9562 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.1711 0.5068 2.7976 35 1 4.0287 -2.3675 6.2141 36 1 3.4045 -1.4125 4.8479 37 1 1.1916 -0.5106 7.6503 38 1 4.5534 -4.7637 5.8225 39 1 4.9223 -5.2432 4.1486 40 1 6.3096 -3.1469 7.0547 41 1 8.8724 -2.4980 6.5010 42 1 9.3334 -3.2333 4.0286 43 1 3.1704 -2.3378 0.3593 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281545245.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:30 Heat of formation + Delta-G solvation = 39.148324 kcal Electronic energy + Delta-G solvation = -26941.762468 eV Core-core repulsion = 23183.000003 eV Total energy + Delta-G solvation = -3758.762465 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.44930 -43.03524 -40.28540 -36.90500 -36.71995 -34.50345 -33.83840 -32.26276 -31.56853 -30.27105 -28.98968 -28.17204 -27.03259 -24.96064 -23.93984 -23.39228 -22.59325 -21.43506 -21.23007 -19.87689 -18.66193 -18.14867 -17.93219 -17.44449 -17.20181 -16.60223 -16.42462 -16.19248 -15.81109 -15.41650 -15.02731 -14.90500 -14.67199 -14.38465 -14.18890 -13.84315 -13.78567 -13.68990 -13.54022 -13.24054 -13.13802 -13.07710 -12.89210 -12.64336 -12.48577 -12.32677 -12.09313 -11.98225 -11.63071 -11.07568 -10.81762 -10.60936 -10.49110 -10.15821 -9.64146 -9.42470 -9.26802 -7.98173 -6.04086 0.68928 0.79050 1.42083 1.43324 1.52726 1.66036 1.69938 1.83918 2.15887 2.46179 2.61983 2.79007 3.34198 3.64159 3.67113 3.85976 3.91163 3.99399 4.06345 4.16063 4.17318 4.27602 4.40934 4.56859 4.58315 4.69705 4.71784 4.84852 4.89720 4.92678 5.00286 5.05703 5.10852 5.21045 5.26944 5.33034 5.49127 5.63071 5.66409 5.94805 5.98217 6.25795 6.32140 6.38143 6.61216 6.96108 7.16275 7.44108 7.60197 9.09741 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.008922 B = 0.005646 C = 0.003901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3137.487154 B = 4957.839232 C = 7175.844679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.120 3.880 3 C -0.158 4.158 4 N -0.442 5.442 5 C 0.169 3.831 6 N -0.444 5.444 7 C -0.095 4.095 8 C 0.593 3.407 9 O -0.596 6.596 10 N -0.587 5.587 11 C 0.252 3.748 12 C -0.503 4.503 13 H 0.032 0.968 14 C 0.032 3.968 15 N -0.916 5.916 16 Si 0.943 3.057 17 H -0.278 1.278 18 H -0.280 1.280 19 H -0.283 1.283 20 C 0.191 3.809 21 C -0.043 4.043 22 C -0.205 4.205 23 C -0.223 4.223 24 C -0.043 4.043 25 O -0.192 6.192 26 C 0.037 3.963 27 H 0.061 0.939 28 H 0.050 0.950 29 H 0.105 0.895 30 H 0.119 0.881 31 H 0.053 0.947 32 H 0.105 0.895 33 H 0.062 0.938 34 H 0.222 0.778 35 H 0.004 0.996 36 H 0.069 0.931 37 H 0.260 0.740 38 H 0.114 0.886 39 H 0.089 0.911 40 H 0.146 0.854 41 H 0.174 0.826 42 H 0.242 0.758 43 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.749 4.932 -13.094 14.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.019 3.981 3 C -0.215 4.215 4 N -0.124 5.124 5 C -0.114 4.114 6 N -0.161 5.161 7 C -0.224 4.224 8 C 0.384 3.616 9 O -0.479 6.479 10 N -0.315 5.315 11 C 0.132 3.868 12 C -0.542 4.542 13 H 0.050 0.950 14 C -0.167 4.167 15 N -0.556 5.556 16 Si 0.770 3.230 17 H -0.204 1.204 18 H -0.205 1.205 19 H -0.209 1.209 20 C 0.068 3.932 21 C -0.094 4.094 22 C -0.225 4.225 23 C -0.242 4.242 24 C -0.110 4.110 25 O -0.088 6.088 26 C -0.104 4.104 27 H 0.081 0.919 28 H 0.069 0.931 29 H 0.124 0.876 30 H 0.137 0.863 31 H 0.072 0.928 32 H 0.123 0.877 33 H 0.081 0.919 34 H 0.238 0.762 35 H 0.022 0.978 36 H 0.086 0.914 37 H 0.069 0.931 38 H 0.132 0.868 39 H 0.107 0.893 40 H 0.164 0.836 41 H 0.192 0.808 42 H 0.258 0.742 43 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 3.797 4.639 -12.857 14.186 hybrid contribution -0.940 -0.255 0.186 0.992 sum 2.857 4.385 -12.671 13.709 Atomic orbital electron populations 1.22178 0.92179 1.02820 1.04552 1.21905 0.96317 0.94708 0.85189 1.22160 1.01516 0.93269 1.04573 1.45961 1.36822 1.20903 1.08717 1.25634 1.04289 1.02522 0.78987 1.71222 1.09523 1.03486 1.31839 1.20488 1.09161 1.01095 0.91666 1.17436 0.78502 0.83733 0.81970 1.90632 1.55942 1.44022 1.57351 1.48175 1.45320 1.31316 1.06692 1.19506 0.90864 0.89960 0.86493 1.21249 0.99356 1.08277 1.25286 0.95001 1.25303 1.00554 0.94832 0.96006 1.70029 1.37905 1.16328 1.31364 0.85812 0.81510 0.77733 0.77912 1.20370 1.20520 1.20882 1.19741 0.81400 0.89967 1.02066 1.22995 0.91721 1.06350 0.88324 1.21879 0.96701 1.04023 0.99908 1.22144 0.96728 1.07377 0.97905 1.24895 0.90438 1.00105 0.95545 1.84059 1.20393 1.63774 1.40619 1.22636 0.97948 0.91324 0.98513 0.91944 0.93087 0.87596 0.86311 0.92759 0.87676 0.91854 0.76211 0.97807 0.91399 0.93114 0.86848 0.89288 0.83636 0.80810 0.74169 0.78187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 9.24 71.98 0.67 -1.58 16 2 C 0.12 1.93 3.57 44.99 0.16 2.09 16 3 C -0.16 -2.06 9.24 71.98 0.67 -1.39 16 4 N -0.44 -12.10 2.59 -505.87 -1.31 -13.41 16 5 C 0.17 5.80 11.53 180.10 2.08 7.87 16 6 N -0.44 -20.12 7.08 -188.80 -1.34 -21.46 16 7 C -0.10 -4.22 6.64 40.51 0.27 -3.95 16 8 C 0.59 29.00 7.60 86.64 0.66 29.66 16 9 O -0.60 -29.82 16.38 -4.12 -0.07 -29.88 16 10 N -0.59 -28.63 2.46 -834.49 -2.05 -30.69 16 11 C 0.25 13.54 4.78 85.63 0.41 13.95 16 12 C -0.50 -28.52 8.40 25.60 0.21 -28.31 16 13 H 0.03 1.88 7.81 -2.91 -0.02 1.86 16 14 C 0.03 1.80 5.46 84.65 0.46 2.26 16 15 N -0.92 -53.04 13.29 21.45 0.28 -52.75 16 16 Si 0.94 44.82 29.54 68.60 2.03 46.85 16 17 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 18 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 19 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 20 C 0.19 8.14 5.99 85.63 0.51 8.65 16 21 C -0.04 -1.71 6.90 24.83 0.17 -1.54 16 22 C -0.20 -7.47 10.81 22.19 0.24 -7.23 16 23 C -0.22 -6.56 10.91 22.19 0.24 -6.32 16 24 C -0.04 -1.21 12.09 66.97 0.81 -0.40 16 25 O -0.19 -7.27 10.65 -2.53 -0.03 -7.30 16 26 C 0.04 1.25 11.22 83.72 0.94 2.19 16 27 H 0.06 0.97 7.94 -2.38 -0.02 0.95 16 28 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.12 1.47 8.07 -2.39 -0.02 1.46 16 31 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.06 0.91 7.94 -2.39 -0.02 0.89 16 34 H 0.22 6.17 8.06 -2.91 -0.02 6.15 16 35 H 0.00 0.22 8.02 -2.39 -0.02 0.20 16 36 H 0.07 3.91 5.29 -2.39 -0.01 3.90 16 37 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 38 H 0.11 4.54 8.11 -2.39 -0.02 4.53 16 39 H 0.09 3.74 7.23 -2.39 -0.02 3.73 16 40 H 0.15 5.27 8.06 -2.91 -0.02 5.25 16 41 H 0.17 3.91 8.06 -2.91 -0.02 3.88 16 42 H 0.24 4.20 8.06 -2.91 -0.02 4.18 16 43 H 0.20 5.62 8.06 -2.91 -0.02 5.60 16 Total: -1.00 -77.53 369.25 7.02 -70.51 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: 1.01 Total: 22.19 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: 8.50 Total: 15.95 kcal Atomic # 7 Polarization: -113.89 SS G_CDS: -4.41 Total: -118.31 kcal Atomic # 8 Polarization: -37.09 SS G_CDS: -0.09 Total: -37.19 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -77.53 7.02 -70.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281545245.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.659 kcal (2) G-P(sol) polarization free energy of solvation -77.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds