Wall clock time and date at job start Tue Mar 31 2020 11:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52996 * 109.47214 * 2 1 4 4 H 1.08996 * 109.47595 * 55.00306 * 3 2 1 5 5 C 1.53006 * 109.47272 * 175.00261 * 3 2 1 6 6 O 1.42904 * 109.46930 * 294.99958 * 3 2 1 7 7 C 1.35689 * 117.00111 * 149.99994 * 6 3 2 8 8 C 1.38776 * 119.63253 * 180.02562 * 7 6 3 9 9 C 1.39441 * 118.97553 * 180.02562 * 8 7 6 10 10 C 1.48497 * 120.87496 * 180.02562 * 9 8 7 11 11 N 1.30722 * 126.40500 * 0.02562 * 10 9 8 12 12 O 1.21293 * 110.10222 * 179.97438 * 11 10 9 13 13 C 1.33662 * 110.02041 * 0.02562 * 12 11 10 14 14 C 1.50707 * 126.44389 * 180.02562 * 13 12 11 15 15 C 1.52998 * 109.47011 * 269.97471 * 14 13 12 16 16 C 1.50704 * 109.46627 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00416 * 0.02562 * 16 15 14 18 18 C 1.37882 * 119.99686 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00058 * 359.97438 * 18 16 15 20 20 Si 1.86792 * 119.99888 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47464 * 59.99859 * 20 18 16 22 22 H 1.48501 * 109.47141 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47187 * 300.00088 * 20 18 16 24 24 N 1.30981 * 107.11378 * 0.02562 * 13 12 11 25 25 C 1.39869 * 118.25523 * 0.26678 * 9 8 7 26 26 C 1.37883 * 119.15231 * 359.48452 * 25 9 8 27 27 N 1.31976 * 120.95628 * 0.53268 * 26 25 9 28 28 H 1.08999 * 109.47216 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47061 * 299.99964 * 1 2 3 30 30 H 1.09000 * 109.47467 * 60.00089 * 1 2 3 31 31 H 1.09006 * 109.47222 * 239.99509 * 2 1 3 32 32 H 1.09000 * 109.47467 * 119.99911 * 2 1 3 33 33 H 1.09001 * 109.47032 * 60.00223 * 5 3 2 34 34 H 1.08999 * 109.47218 * 179.97438 * 5 3 2 35 35 H 1.08997 * 109.46760 * 299.99936 * 5 3 2 36 36 H 1.08000 * 120.50997 * 0.02562 * 8 7 6 37 37 H 1.08999 * 109.46884 * 29.97556 * 14 13 12 38 38 H 1.08997 * 109.46914 * 149.97004 * 14 13 12 39 39 H 1.08999 * 109.47366 * 299.99790 * 15 14 13 40 40 H 1.09001 * 109.47006 * 60.00288 * 15 14 13 41 41 H 0.96996 * 120.00454 * 180.02562 * 19 18 16 42 42 H 1.08001 * 120.41822 * 179.72586 * 25 9 8 43 43 H 1.08000 * 119.51850 * 180.24272 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4443 0.1257 6 8 1.6619 2.0813 -1.2211 7 6 1.4505 3.4209 -1.1757 8 6 1.0807 4.0966 -2.3301 9 6 0.8675 5.4732 -2.2680 10 6 0.4701 6.2381 -3.4772 11 7 0.2811 5.7515 -4.6757 12 8 -0.0370 6.6378 -5.4401 13 6 -0.0836 7.8060 -4.7923 14 6 -0.4383 9.1452 -5.3856 15 6 0.8310 9.8279 -5.8991 16 6 0.4761 11.1667 -6.4929 17 1 -0.5518 11.4978 -6.5027 18 6 1.4639 11.9690 -7.0237 19 7 2.7157 11.5661 -7.0114 20 14 1.0242 13.6288 -7.7592 21 1 0.3916 14.4793 -6.7190 22 1 2.2562 14.2914 -8.2576 23 1 0.0752 13.4357 -8.8849 24 7 0.2369 7.5680 -3.5448 25 6 1.0427 6.1156 -1.0380 26 6 1.4066 5.3700 0.0633 27 7 1.6001 4.0680 -0.0321 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.9994 0.9053 -0.7162 34 1 3.9282 2.4719 0.1252 35 1 3.8532 0.9570 1.0570 36 1 0.9599 3.5645 -3.2621 37 1 -1.1345 9.0034 -6.2123 38 1 -0.9031 9.7691 -4.6222 39 1 1.5271 9.9697 -5.0724 40 1 1.2957 9.2038 -6.6625 41 1 3.4107 12.1306 -7.3844 42 1 0.8911 7.1814 -0.9512 43 1 1.5397 5.8594 1.0169 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291063920.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:31 Heat of formation + Delta-G solvation = 44.201559 kcal Electronic energy + Delta-G solvation = -25016.570675 eV Core-core repulsion = 21258.027335 eV Total energy + Delta-G solvation = -3758.543340 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -45.27833 -40.88561 -38.65704 -35.85564 -34.76577 -34.48627 -33.08336 -31.94070 -30.74926 -30.26211 -29.91321 -25.93975 -25.50258 -24.25819 -23.85039 -22.76855 -22.28103 -21.28723 -20.38228 -18.67152 -17.81732 -17.35353 -16.66055 -16.28607 -16.07449 -15.92391 -15.29007 -14.71425 -14.58701 -14.32795 -14.11072 -14.02746 -13.92166 -13.49589 -13.21399 -12.96678 -12.50563 -12.33718 -12.25883 -12.10304 -12.06487 -11.89574 -11.56710 -11.44905 -11.05015 -11.01372 -10.96269 -10.88070 -10.78253 -10.39505 -10.18576 -9.88213 -9.76168 -9.37257 -9.16048 -8.70353 -8.48298 -6.12657 -4.17879 0.49916 0.98766 1.60797 2.60927 2.68420 3.16053 3.28064 3.33272 3.34973 3.56052 3.64176 4.04298 4.13343 4.37087 4.39279 4.61350 4.75761 4.79734 4.88484 5.00172 5.07669 5.14158 5.22343 5.23912 5.25724 5.42076 5.47184 5.55896 5.58517 5.66276 5.73433 5.85347 5.87343 5.89983 5.95279 6.11633 6.14481 6.17143 6.27113 6.54551 7.05539 7.43854 7.50266 7.60453 7.82079 8.16998 8.36146 8.87076 9.47280 10.98469 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.030466 B = 0.002099 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.824288 B =13338.837957 C =13584.336922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C 0.085 3.915 4 H 0.091 0.909 5 C -0.170 4.170 6 O -0.298 6.298 7 C 0.326 3.674 8 C -0.162 4.162 9 C 0.073 3.927 10 C 0.193 3.807 11 N -0.377 5.377 12 O 0.081 5.919 13 C 0.222 3.778 14 C -0.030 4.030 15 C 0.028 3.972 16 C -0.527 4.527 17 H 0.062 0.938 18 C 0.060 3.940 19 N -0.891 5.891 20 Si 0.899 3.101 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.275 1.275 24 N -0.483 5.483 25 C -0.170 4.170 26 C 0.140 3.860 27 N -0.534 5.534 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.148 0.852 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.027 0.973 40 H 0.024 0.976 41 H 0.264 0.736 42 H 0.152 0.848 43 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.200 -19.245 15.238 24.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C 0.029 3.971 4 H 0.109 0.891 5 C -0.227 4.227 6 O -0.205 6.205 7 C 0.147 3.853 8 C -0.185 4.185 9 C 0.064 3.936 10 C -0.077 4.077 11 N -0.084 5.084 12 O 0.020 5.980 13 C 0.003 3.997 14 C -0.069 4.069 15 C -0.011 4.011 16 C -0.566 4.566 17 H 0.080 0.920 18 C -0.142 4.142 19 N -0.529 5.529 20 Si 0.726 3.274 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.201 1.201 24 N -0.215 5.215 25 C -0.192 4.192 26 C -0.015 4.015 27 N -0.258 5.258 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.166 0.834 37 H 0.112 0.888 38 H 0.121 0.879 39 H 0.045 0.955 40 H 0.043 0.957 41 H 0.074 0.926 42 H 0.170 0.830 43 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -2.619 -20.612 15.922 26.177 hybrid contribution -0.223 1.549 -1.121 1.925 sum -2.841 -19.063 14.801 24.301 Atomic orbital electron populations 1.21762 0.95199 1.01815 1.02366 1.21691 0.96811 0.94270 1.03127 1.22431 0.95272 0.93066 0.86328 0.89131 1.22222 0.95015 1.03038 1.02443 1.86298 1.82425 1.15798 1.35991 1.19453 0.91923 0.84758 0.89183 1.20974 1.05509 0.92984 0.99015 1.17331 0.95938 0.90828 0.89490 1.23574 1.02897 0.88503 0.92703 1.74824 1.18414 1.13189 1.01977 1.85287 1.62137 1.14436 1.36176 1.29666 0.92165 0.92020 0.85868 1.20837 1.03186 0.82256 1.00586 1.19170 0.89872 0.95226 0.96800 1.21015 0.94148 1.01755 1.39645 0.92019 1.25016 0.94914 0.98502 0.95813 1.69950 0.99988 1.37754 1.45203 0.86554 0.77774 0.83535 0.79546 1.20076 1.21258 1.20059 1.72018 1.20053 1.11470 1.17992 1.22108 1.02639 1.02707 0.91738 1.22357 0.92967 0.87567 0.98609 1.67193 1.20408 1.11781 1.26440 0.92448 0.92771 0.92118 0.90906 0.90024 0.91957 0.91849 0.91103 0.83446 0.88798 0.87945 0.95470 0.95731 0.92640 0.83023 0.81549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.81 37.15 0.36 -0.78 16 2 C -0.12 -0.87 5.64 -26.74 -0.15 -1.02 16 3 C 0.09 0.78 2.49 -26.73 -0.07 0.72 16 4 H 0.09 0.87 6.98 -51.93 -0.36 0.51 16 5 C -0.17 -1.40 9.53 37.16 0.35 -1.05 16 6 O -0.30 -3.53 9.30 -18.77 -0.17 -3.71 16 7 C 0.33 4.19 7.45 -17.17 -0.13 4.06 16 8 C -0.16 -2.25 9.72 -38.93 -0.38 -2.63 16 9 C 0.07 1.09 5.91 -104.61 -0.62 0.47 16 10 C 0.19 3.37 7.83 -156.14 -1.22 2.15 16 11 N -0.38 -6.78 11.94 30.96 0.37 -6.41 16 12 O 0.08 1.47 11.29 18.06 0.20 1.67 16 13 C 0.22 4.06 7.75 -12.99 -0.10 3.96 16 14 C -0.03 -0.54 5.78 -27.88 -0.16 -0.70 16 15 C 0.03 0.66 4.96 -27.88 -0.14 0.52 16 16 C -0.53 -13.76 9.11 -34.44 -0.31 -14.08 16 17 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -25.77 13.29 55.43 0.74 -25.03 16 20 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 21 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 22 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 24 N -0.48 -8.91 11.35 -9.89 -0.11 -9.02 16 25 C -0.17 -2.13 9.79 -39.10 -0.38 -2.52 16 26 C 0.14 1.49 11.16 -17.62 -0.20 1.30 16 27 N -0.53 -6.38 8.62 -13.40 -0.12 -6.50 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.54 7.82 -51.93 -0.41 0.13 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.15 2.02 7.95 -52.49 -0.42 1.60 16 37 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 38 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 39 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 42 H 0.15 1.83 7.96 -52.49 -0.42 1.41 16 43 H 0.17 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 373.44 15.07 5.63 5.63 Total: -1.00 -30.00 373.44 -7.94 -37.94 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -6.22 Total: -2.06 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: -3.24 Total: -8.07 kcal Atomic # 7 Polarization: -47.85 SS G_CDS: 0.88 Total: -46.97 kcal Atomic # 8 Polarization: -2.07 SS G_CDS: 0.03 Total: -2.04 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.00 -7.94 -37.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291063920.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.138 kcal (2) G-P(sol) polarization free energy of solvation -29.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds