Wall clock time and date at job start Tue Mar 31 2020 11:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52996 * 109.47214 * 2 1 4 4 H 1.08996 * 109.47595 * 55.00306 * 3 2 1 5 5 C 1.53006 * 109.47272 * 175.00261 * 3 2 1 6 6 O 1.42904 * 109.46930 * 294.99958 * 3 2 1 7 7 C 1.35689 * 117.00111 * 149.99994 * 6 3 2 8 8 C 1.38776 * 119.63253 * 180.02562 * 7 6 3 9 9 C 1.39441 * 118.97553 * 180.02562 * 8 7 6 10 10 C 1.48497 * 120.87496 * 180.02562 * 9 8 7 11 11 N 1.30722 * 126.40500 * 0.02562 * 10 9 8 12 12 O 1.21293 * 110.10222 * 179.97438 * 11 10 9 13 13 C 1.33662 * 110.02041 * 0.02562 * 12 11 10 14 14 C 1.50707 * 126.44389 * 180.02562 * 13 12 11 15 15 C 1.52998 * 109.47011 * 269.97471 * 14 13 12 16 16 C 1.50704 * 109.46627 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00416 * 0.02562 * 16 15 14 18 18 C 1.37882 * 119.99686 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00058 * 359.97438 * 18 16 15 20 20 Si 1.86792 * 119.99888 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47464 * 59.99859 * 20 18 16 22 22 H 1.48501 * 109.47141 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47187 * 300.00088 * 20 18 16 24 24 N 1.30981 * 107.11378 * 0.02562 * 13 12 11 25 25 C 1.39869 * 118.25523 * 0.26678 * 9 8 7 26 26 C 1.37883 * 119.15231 * 359.48452 * 25 9 8 27 27 N 1.31976 * 120.95628 * 0.53268 * 26 25 9 28 28 H 1.08999 * 109.47216 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47061 * 299.99964 * 1 2 3 30 30 H 1.09000 * 109.47467 * 60.00089 * 1 2 3 31 31 H 1.09006 * 109.47222 * 239.99509 * 2 1 3 32 32 H 1.09000 * 109.47467 * 119.99911 * 2 1 3 33 33 H 1.09001 * 109.47032 * 60.00223 * 5 3 2 34 34 H 1.08999 * 109.47218 * 179.97438 * 5 3 2 35 35 H 1.08997 * 109.46760 * 299.99936 * 5 3 2 36 36 H 1.08000 * 120.50997 * 0.02562 * 8 7 6 37 37 H 1.08999 * 109.46884 * 29.97556 * 14 13 12 38 38 H 1.08997 * 109.46914 * 149.97004 * 14 13 12 39 39 H 1.08999 * 109.47366 * 299.99790 * 15 14 13 40 40 H 1.09001 * 109.47006 * 60.00288 * 15 14 13 41 41 H 0.96996 * 120.00454 * 180.02562 * 19 18 16 42 42 H 1.08001 * 120.41822 * 179.72586 * 25 9 8 43 43 H 1.08000 * 119.51850 * 180.24272 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4443 0.1257 6 8 1.6619 2.0813 -1.2211 7 6 1.4505 3.4209 -1.1757 8 6 1.0807 4.0966 -2.3301 9 6 0.8675 5.4732 -2.2680 10 6 0.4701 6.2381 -3.4772 11 7 0.2811 5.7515 -4.6757 12 8 -0.0370 6.6378 -5.4401 13 6 -0.0836 7.8060 -4.7923 14 6 -0.4383 9.1452 -5.3856 15 6 0.8310 9.8279 -5.8991 16 6 0.4761 11.1667 -6.4929 17 1 -0.5518 11.4978 -6.5027 18 6 1.4639 11.9690 -7.0237 19 7 2.7157 11.5661 -7.0114 20 14 1.0242 13.6288 -7.7592 21 1 0.3916 14.4793 -6.7190 22 1 2.2562 14.2914 -8.2576 23 1 0.0752 13.4357 -8.8849 24 7 0.2369 7.5680 -3.5448 25 6 1.0427 6.1156 -1.0380 26 6 1.4066 5.3700 0.0633 27 7 1.6001 4.0680 -0.0321 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.9994 0.9053 -0.7162 34 1 3.9282 2.4719 0.1252 35 1 3.8532 0.9570 1.0570 36 1 0.9599 3.5645 -3.2621 37 1 -1.1345 9.0034 -6.2123 38 1 -0.9031 9.7691 -4.6222 39 1 1.5271 9.9697 -5.0724 40 1 1.2957 9.2038 -6.6625 41 1 3.4107 12.1306 -7.3844 42 1 0.8911 7.1814 -0.9512 43 1 1.5397 5.8594 1.0169 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291063920.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:31 Heat of formation + Delta-G solvation = 25.684702 kcal Electronic energy + Delta-G solvation = -25017.373626 eV Core-core repulsion = 21258.027335 eV Total energy + Delta-G solvation = -3759.346291 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -46.69769 -41.83210 -39.54975 -37.24738 -36.35699 -35.22784 -34.70665 -33.35502 -31.86721 -31.54412 -30.73765 -27.76829 -26.65536 -25.16455 -24.95475 -24.00189 -23.59577 -22.54116 -21.45166 -19.74191 -19.26825 -18.60082 -18.37962 -17.55484 -17.10734 -16.80049 -16.49962 -16.32984 -15.70351 -15.49537 -15.11851 -14.98791 -14.87358 -14.67477 -14.30919 -14.18091 -13.80297 -13.73675 -13.44151 -13.22280 -13.15046 -12.88088 -12.77668 -12.70297 -12.64895 -12.25862 -12.06398 -12.04354 -11.93149 -11.76145 -11.60473 -11.38246 -11.27648 -10.82897 -10.54670 -10.51591 -9.64945 -8.19177 -6.31076 -0.65942 0.01724 0.21410 1.28745 1.47506 1.49989 1.57460 1.70737 1.79064 2.35111 2.45501 2.63157 2.79249 3.16429 3.18935 3.70028 3.75612 3.84720 3.93633 3.97145 4.03332 4.17374 4.31135 4.40633 4.46041 4.50734 4.52518 4.59691 4.64277 4.66465 4.77525 4.82376 4.94545 4.99090 5.03566 5.08193 5.09232 5.19098 5.32243 5.35652 5.44797 5.53699 5.78628 6.13882 6.17167 6.65009 6.84715 6.94091 7.39126 8.92930 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.030466 B = 0.002099 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.824288 B =13338.837957 C =13584.336922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C 0.078 3.922 4 H 0.088 0.912 5 C -0.166 4.166 6 O -0.308 6.308 7 C 0.324 3.676 8 C -0.173 4.173 9 C 0.050 3.950 10 C 0.195 3.805 11 N -0.389 5.389 12 O 0.075 5.925 13 C 0.218 3.782 14 C -0.014 4.014 15 C 0.033 3.967 16 C -0.537 4.537 17 H 0.080 0.920 18 C -0.001 4.001 19 N -0.935 5.935 20 Si 0.969 3.031 21 H -0.264 1.264 22 H -0.291 1.291 23 H -0.263 1.263 24 N -0.492 5.492 25 C -0.171 4.171 26 C 0.155 3.845 27 N -0.531 5.531 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.039 0.961 31 H 0.071 0.929 32 H 0.106 0.894 33 H 0.060 0.940 34 H 0.046 0.954 35 H 0.094 0.906 36 H 0.140 0.860 37 H 0.120 0.880 38 H 0.119 0.881 39 H -0.005 1.005 40 H -0.002 1.002 41 H 0.263 0.737 42 H 0.157 0.843 43 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.114 -19.367 16.846 25.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C 0.023 3.977 4 H 0.106 0.894 5 C -0.223 4.223 6 O -0.216 6.216 7 C 0.146 3.854 8 C -0.196 4.196 9 C 0.041 3.959 10 C -0.075 4.075 11 N -0.098 5.098 12 O 0.017 5.983 13 C -0.002 4.002 14 C -0.053 4.053 15 C -0.006 4.006 16 C -0.575 4.575 17 H 0.098 0.902 18 C -0.199 4.199 19 N -0.575 5.575 20 Si 0.794 3.206 21 H -0.189 1.189 22 H -0.217 1.217 23 H -0.188 1.188 24 N -0.225 5.225 25 C -0.193 4.193 26 C -0.001 4.001 27 N -0.256 5.256 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.058 0.942 31 H 0.090 0.910 32 H 0.125 0.875 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.113 0.887 36 H 0.158 0.842 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.013 0.987 40 H 0.016 0.984 41 H 0.072 0.928 42 H 0.175 0.825 43 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -3.558 -20.753 17.520 27.392 hybrid contribution 0.100 1.482 -1.513 2.120 sum -3.458 -19.271 16.007 25.290 Atomic orbital electron populations 1.21757 0.95511 1.02441 1.01402 1.21727 0.96495 0.93005 1.04263 1.22710 0.95967 0.93892 0.85147 0.89412 1.22206 0.94193 1.02259 1.03666 1.86297 1.82290 1.15339 1.37668 1.19484 0.91606 0.85274 0.89071 1.20928 1.06471 0.92822 0.99375 1.17488 0.97732 0.91224 0.89478 1.24039 1.01825 0.88309 0.93307 1.74810 1.19296 1.13270 1.02380 1.85268 1.62351 1.14428 1.36303 1.29613 0.92380 0.92145 0.86018 1.20615 1.00774 0.82016 1.01903 1.18963 0.91705 0.94995 0.94917 1.21538 0.94965 1.02334 1.38691 0.90178 1.26005 0.94768 1.02668 0.96480 1.70106 1.01245 1.39403 1.46777 0.85428 0.77431 0.78675 0.79082 1.18895 1.21688 1.18783 1.72007 1.20199 1.12090 1.18180 1.22267 1.02545 1.03100 0.91393 1.23002 0.90625 0.86958 0.99495 1.67333 1.20135 1.12315 1.25807 0.91056 0.92616 0.94170 0.91024 0.87536 0.92066 0.93463 0.88744 0.84169 0.86204 0.86269 0.98665 0.98407 0.92813 0.82535 0.77442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.81 71.98 0.71 -1.40 16 2 C -0.12 -1.49 5.64 30.59 0.17 -1.31 16 3 C 0.08 1.34 2.49 30.59 0.08 1.42 16 4 H 0.09 1.55 6.98 -2.39 -0.02 1.54 16 5 C -0.17 -2.49 9.53 71.98 0.69 -1.81 16 6 O -0.31 -7.24 9.30 -90.08 -0.84 -8.08 16 7 C 0.32 8.24 7.45 84.76 0.63 8.87 16 8 C -0.17 -4.89 9.72 22.69 0.22 -4.67 16 9 C 0.05 1.49 5.91 -19.86 -0.12 1.38 16 10 C 0.20 6.92 7.83 137.34 1.08 7.99 16 11 N -0.39 -14.33 11.94 -59.21 -0.71 -15.03 16 12 O 0.08 2.78 11.29 74.67 0.84 3.63 16 13 C 0.22 8.00 7.75 88.36 0.68 8.69 16 14 C -0.01 -0.52 5.78 29.85 0.17 -0.34 16 15 C 0.03 1.59 4.96 29.85 0.15 1.74 16 16 C -0.54 -27.88 9.11 25.60 0.23 -27.65 16 17 H 0.08 3.77 7.74 -2.91 -0.02 3.75 16 18 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 19 N -0.94 -55.35 13.29 21.45 0.28 -55.06 16 20 Si 0.97 41.92 29.54 68.60 2.03 43.95 16 21 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 22 H -0.29 -12.66 7.11 99.48 0.71 -11.96 16 23 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 24 N -0.49 -18.25 11.35 -302.57 -3.44 -21.68 16 25 C -0.17 -4.13 9.79 22.58 0.22 -3.91 16 26 C 0.15 2.97 11.16 84.59 0.94 3.91 16 27 N -0.53 -11.92 8.62 -309.16 -2.67 -14.59 16 28 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.05 0.73 8.14 -2.38 -0.02 0.72 16 30 H 0.04 0.71 7.82 -2.39 -0.02 0.69 16 31 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.14 4.05 7.95 -2.91 -0.02 4.02 16 37 H 0.12 3.69 8.14 -2.39 -0.02 3.67 16 38 H 0.12 3.91 8.14 -2.39 -0.02 3.89 16 39 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 40 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 41 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 42 H 0.16 3.59 7.96 -2.91 -0.02 3.57 16 43 H 0.21 2.19 8.06 -2.91 -0.02 2.17 16 Total: -1.00 -65.89 373.44 2.83 -63.05 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: 1.01 Total: 10.52 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: 6.32 Total: -6.70 kcal Atomic # 7 Polarization: -99.84 SS G_CDS: -6.52 Total: -106.37 kcal Atomic # 8 Polarization: -4.46 SS G_CDS: 0.01 Total: -4.45 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Total: -65.89 2.83 -63.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291063920.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.738 kcal (2) G-P(sol) polarization free energy of solvation -65.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds