Wall clock time and date at job start Tue Mar 31 2020 11:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 N 1.46506 * 109.47289 * 120.00172 * 2 1 3 5 5 N 1.40054 * 125.96017 * 300.02427 * 4 2 1 6 6 C 1.31792 * 108.28278 * 179.97438 * 5 4 2 7 7 C 1.47871 * 125.94660 * 179.97438 * 6 5 4 8 8 C 1.35905 * 125.92865 * 359.74087 * 7 6 5 9 9 C 1.40983 * 106.74373 * 179.85394 * 8 7 6 10 10 C 1.34703 * 107.02485 * 0.40732 * 9 8 7 11 11 O 1.34343 * 108.66624 * 359.74498 * 10 9 8 12 12 C 1.40919 * 108.10089 * 359.97438 * 6 5 4 13 13 C 1.35837 * 107.77971 * 359.76323 * 12 6 5 14 14 N 1.39481 * 126.12041 * 180.23417 * 13 12 6 15 15 C 1.34783 * 120.00126 * 0.17647 * 14 13 12 16 16 O 1.21295 * 119.99766 * 359.97438 * 15 14 13 17 17 C 1.50691 * 120.00264 * 179.97438 * 15 14 13 18 18 C 1.53005 * 109.47395 * 179.97438 * 17 15 14 19 19 C 1.50694 * 109.47035 * 180.02562 * 18 17 15 20 20 H 1.07998 * 120.00699 * 359.97438 * 19 18 17 21 21 C 1.37886 * 119.99816 * 180.02562 * 19 18 17 22 22 N 1.31515 * 119.99569 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00250 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.46821 * 359.97438 * 23 21 19 25 25 H 1.48492 * 109.47405 * 119.99781 * 23 21 19 26 26 H 1.48504 * 109.47111 * 239.99968 * 23 21 19 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 31 31 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 32 32 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 34 34 H 1.07998 * 126.63215 * 359.97438 * 8 7 6 35 35 H 1.07995 * 126.48606 * 180.15010 * 9 8 7 36 36 H 1.07994 * 125.66822 * 179.71162 * 10 9 8 37 37 H 1.08004 * 126.10530 * 179.97438 * 12 6 5 38 38 H 0.96994 * 120.00363 * 180.17737 * 14 13 12 39 39 H 1.09007 * 109.47338 * 300.00143 * 17 15 14 40 40 H 1.08996 * 109.47183 * 59.99889 * 17 15 14 41 41 H 1.08993 * 109.46889 * 300.00384 * 18 17 15 42 42 H 1.09004 * 109.46807 * 60.00134 * 18 17 15 43 43 H 0.97007 * 119.99710 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6907 1.1962 5 7 1.7577 -0.3229 2.5222 6 6 2.3647 -1.1819 3.3164 7 6 2.3481 -1.1585 4.7948 8 6 1.7083 -0.2445 5.5708 9 6 1.9562 -0.6049 6.9111 10 6 2.7343 -1.7042 6.8864 11 8 2.9692 -2.0361 5.6060 12 6 3.0321 -2.1264 2.5113 13 6 2.7978 -1.8040 1.2127 14 7 3.2749 -2.4903 0.0961 15 6 4.0432 -3.5861 0.2561 16 8 4.3200 -3.9751 1.3711 17 6 4.5582 -4.3279 -0.9503 18 6 5.3978 -5.5229 -0.4941 19 6 5.9134 -6.2643 -1.7005 20 1 5.6665 -5.9182 -2.6934 21 6 6.6994 -7.3853 -1.5369 22 7 6.9987 -7.8076 -0.3279 23 14 7.3391 -8.3040 -3.0322 24 1 6.8632 -7.6310 -4.2675 25 1 8.8238 -8.3100 -3.0118 26 1 6.8380 -9.7017 -3.0062 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.6768 1.9562 0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.1216 0.5946 5.2273 35 1 1.5944 -0.0938 7.7909 36 1 3.1078 -2.2309 7.7521 37 1 3.6216 -2.9600 2.8638 38 1 3.0539 -2.1790 -0.7955 39 1 3.7166 -4.6811 -1.5463 40 1 5.1744 -3.6598 -1.5519 41 1 6.2393 -5.1694 0.1016 42 1 4.7819 -6.1912 0.1077 43 1 7.5521 -8.5960 -0.2127 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293502287.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:44 Heat of formation + Delta-G solvation = 52.195821 kcal Electronic energy + Delta-G solvation = -25658.259479 eV Core-core repulsion = 21900.062797 eV Total energy + Delta-G solvation = -3758.196683 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.53975 -41.42662 -39.25136 -35.99191 -34.71728 -33.59454 -33.06083 -31.43482 -31.06623 -28.88687 -28.59383 -27.62081 -25.85521 -23.68624 -22.84329 -21.70290 -21.32298 -20.65502 -19.76939 -19.43611 -18.39420 -16.86485 -16.79261 -16.14359 -15.77373 -15.63260 -15.23952 -14.85807 -14.77365 -14.60523 -14.45491 -13.67567 -13.52026 -13.27999 -12.89846 -12.80252 -12.66804 -12.53772 -12.49959 -12.29332 -12.23432 -11.72907 -11.60069 -11.28139 -11.04330 -10.93550 -10.70901 -10.58706 -10.09066 -10.02138 -9.74435 -9.51628 -9.35472 -9.15854 -8.39182 -8.08928 -8.03362 -6.02335 -4.07412 1.13440 1.92633 1.93898 2.41919 2.79369 3.04989 3.21276 3.29012 3.33480 3.36610 3.39153 4.15043 4.41655 4.49894 4.55805 4.61832 4.89649 4.94914 5.02828 5.17764 5.20324 5.26840 5.33064 5.39933 5.44030 5.61539 5.64939 5.79267 5.82294 5.85945 5.91808 5.98233 6.02274 6.07891 6.18479 6.40474 6.67777 6.73273 6.93958 7.11432 7.37917 7.66423 7.73257 7.74579 7.98082 8.26282 8.42701 9.00288 9.56712 11.08494 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013008 B = 0.002980 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.926573 B = 9393.193053 C =11348.756290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.158 3.842 3 C -0.161 4.161 4 N -0.379 5.379 5 N -0.266 5.266 6 C 0.149 3.851 7 C 0.067 3.933 8 C -0.176 4.176 9 C -0.219 4.219 10 C -0.029 4.029 11 O -0.161 6.161 12 C -0.263 4.263 13 C 0.318 3.682 14 N -0.661 5.661 15 C 0.514 3.486 16 O -0.493 6.493 17 C -0.123 4.123 18 C 0.036 3.964 19 C -0.529 4.529 20 H 0.057 0.943 21 C 0.059 3.941 22 N -0.887 5.887 23 Si 0.893 3.107 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.284 1.284 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.095 0.905 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.152 0.848 35 H 0.150 0.850 36 H 0.206 0.794 37 H 0.180 0.820 38 H 0.407 0.593 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.026 0.974 42 H 0.026 0.974 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.352 19.067 5.028 23.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.057 3.943 3 C -0.219 4.219 4 N -0.170 5.170 5 N -0.092 5.092 6 C -0.015 4.015 7 C 0.015 3.985 8 C -0.198 4.198 9 C -0.238 4.238 10 C -0.098 4.098 11 O -0.055 6.055 12 C -0.294 4.294 13 C 0.100 3.900 14 N -0.310 5.310 15 C 0.303 3.697 16 O -0.363 6.363 17 C -0.163 4.163 18 C -0.002 4.002 19 C -0.568 4.568 20 H 0.075 0.925 21 C -0.143 4.143 22 N -0.525 5.525 23 Si 0.721 3.279 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.210 1.210 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.113 0.887 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.170 0.830 35 H 0.168 0.832 36 H 0.223 0.777 37 H 0.197 0.803 38 H 0.243 0.757 39 H 0.105 0.895 40 H 0.105 0.895 41 H 0.045 0.955 42 H 0.045 0.955 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.578 19.392 5.566 24.319 hybrid contribution 0.629 -0.905 -1.148 1.592 sum -12.949 18.487 4.418 23.000 Atomic orbital electron populations 1.22146 0.93038 1.03192 1.03513 1.21264 0.95828 0.94044 0.83214 1.22138 1.01961 0.94250 1.03509 1.48877 1.41444 1.21393 1.05271 1.77505 1.24403 1.21867 0.85386 1.18897 0.98448 0.95299 0.88820 1.18796 0.99983 0.92126 0.87549 1.21780 1.04207 1.01503 0.92266 1.21764 1.04455 0.99659 0.97894 1.24187 1.02128 0.99072 0.84394 1.84124 1.58536 1.46523 1.16282 1.21726 1.12250 1.06602 0.88863 1.18191 0.94328 0.87906 0.89586 1.43549 1.52049 1.28808 1.06586 1.21948 0.76151 0.78135 0.93428 1.90644 1.54560 1.64576 1.26519 1.21930 1.01452 0.99652 0.93251 1.18955 0.94537 0.89979 0.96731 1.21195 1.31834 1.11159 0.92576 0.92465 1.25024 0.96221 0.97295 0.95794 1.70003 1.37287 1.24417 1.20841 0.86523 0.78673 0.79756 0.82928 1.19753 1.20970 1.20976 0.90614 0.90860 0.91939 0.88673 0.90867 0.91933 0.90608 0.83044 0.83187 0.77700 0.80335 0.75711 0.89540 0.89541 0.95521 0.95518 0.92891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.24 9.45 37.16 0.35 -0.88 16 2 C 0.16 1.39 3.69 -67.93 -0.25 1.14 16 3 C -0.16 -1.23 9.45 37.15 0.35 -0.88 16 4 N -0.38 -4.97 3.30 -53.81 -0.18 -5.15 16 5 N -0.27 -3.94 12.41 33.34 0.41 -3.52 16 6 C 0.15 2.42 7.08 -82.93 -0.59 1.83 16 7 C 0.07 1.02 7.19 -36.48 -0.26 0.75 16 8 C -0.18 -2.21 10.81 -39.38 -0.43 -2.64 16 9 C -0.22 -2.27 10.89 -39.79 -0.43 -2.71 16 10 C -0.03 -0.31 12.08 29.48 0.36 0.05 16 11 O -0.16 -2.38 10.67 4.57 0.05 -2.33 16 12 C -0.26 -4.68 9.61 -39.43 -0.38 -5.06 16 13 C 0.32 4.92 7.67 -152.66 -1.17 3.75 16 14 N -0.66 -9.26 5.42 -11.37 -0.06 -9.32 16 15 C 0.51 9.34 7.79 -10.99 -0.09 9.25 16 16 O -0.49 -10.99 13.10 5.54 0.07 -10.92 16 17 C -0.12 -2.28 5.64 -27.88 -0.16 -2.43 16 18 C 0.04 0.91 4.26 -27.88 -0.12 0.79 16 19 C -0.53 -14.44 9.11 -34.44 -0.31 -14.76 16 20 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 21 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 22 N -0.89 -26.74 13.29 55.43 0.74 -26.01 16 23 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 24 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 27 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.10 0.64 6.81 -51.93 -0.35 0.29 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.15 1.69 8.06 -52.49 -0.42 1.27 16 35 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 36 H 0.21 1.33 8.06 -52.49 -0.42 0.91 16 37 H 0.18 3.62 5.81 -52.48 -0.31 3.31 16 38 H 0.41 4.02 7.53 -40.82 -0.31 3.71 16 39 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 40 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 41 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 42 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 43 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 370.94 15.07 5.59 5.59 Total: -1.00 -34.96 370.94 -7.62 -42.58 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -6.00 Total: 3.17 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: -3.22 Total: -10.23 kcal Atomic # 7 Polarization: -44.91 SS G_CDS: 0.91 Total: -44.00 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: 0.12 Total: -13.25 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.96 -7.62 -42.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293502287.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.773 kcal (2) G-P(sol) polarization free energy of solvation -34.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds