Wall clock time and date at job start Tue Mar 31 2020 11:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 N 1.46506 * 109.47289 * 120.00172 * 2 1 3 5 5 N 1.40054 * 125.96017 * 300.02427 * 4 2 1 6 6 C 1.31792 * 108.28278 * 179.97438 * 5 4 2 7 7 C 1.47871 * 125.94660 * 179.97438 * 6 5 4 8 8 C 1.35905 * 125.92865 * 359.74087 * 7 6 5 9 9 C 1.40983 * 106.74373 * 179.85394 * 8 7 6 10 10 C 1.34703 * 107.02485 * 0.40732 * 9 8 7 11 11 O 1.34343 * 108.66624 * 359.74498 * 10 9 8 12 12 C 1.40919 * 108.10089 * 359.97438 * 6 5 4 13 13 C 1.35837 * 107.77971 * 359.76323 * 12 6 5 14 14 N 1.39481 * 126.12041 * 180.23417 * 13 12 6 15 15 C 1.34783 * 120.00126 * 0.17647 * 14 13 12 16 16 O 1.21295 * 119.99766 * 359.97438 * 15 14 13 17 17 C 1.50691 * 120.00264 * 179.97438 * 15 14 13 18 18 C 1.53005 * 109.47395 * 179.97438 * 17 15 14 19 19 C 1.50694 * 109.47035 * 180.02562 * 18 17 15 20 20 H 1.07998 * 120.00699 * 359.97438 * 19 18 17 21 21 C 1.37886 * 119.99816 * 180.02562 * 19 18 17 22 22 N 1.31515 * 119.99569 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00250 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.46821 * 359.97438 * 23 21 19 25 25 H 1.48492 * 109.47405 * 119.99781 * 23 21 19 26 26 H 1.48504 * 109.47111 * 239.99968 * 23 21 19 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 31 31 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 32 32 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 34 34 H 1.07998 * 126.63215 * 359.97438 * 8 7 6 35 35 H 1.07995 * 126.48606 * 180.15010 * 9 8 7 36 36 H 1.07994 * 125.66822 * 179.71162 * 10 9 8 37 37 H 1.08004 * 126.10530 * 179.97438 * 12 6 5 38 38 H 0.96994 * 120.00363 * 180.17737 * 14 13 12 39 39 H 1.09007 * 109.47338 * 300.00143 * 17 15 14 40 40 H 1.08996 * 109.47183 * 59.99889 * 17 15 14 41 41 H 1.08993 * 109.46889 * 300.00384 * 18 17 15 42 42 H 1.09004 * 109.46807 * 60.00134 * 18 17 15 43 43 H 0.97007 * 119.99710 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6907 1.1962 5 7 1.7577 -0.3229 2.5222 6 6 2.3647 -1.1819 3.3164 7 6 2.3481 -1.1585 4.7948 8 6 1.7083 -0.2445 5.5708 9 6 1.9562 -0.6049 6.9111 10 6 2.7343 -1.7042 6.8864 11 8 2.9692 -2.0361 5.6060 12 6 3.0321 -2.1264 2.5113 13 6 2.7978 -1.8040 1.2127 14 7 3.2749 -2.4903 0.0961 15 6 4.0432 -3.5861 0.2561 16 8 4.3200 -3.9751 1.3711 17 6 4.5582 -4.3279 -0.9503 18 6 5.3978 -5.5229 -0.4941 19 6 5.9134 -6.2643 -1.7005 20 1 5.6665 -5.9182 -2.6934 21 6 6.6994 -7.3853 -1.5369 22 7 6.9987 -7.8076 -0.3279 23 14 7.3391 -8.3040 -3.0322 24 1 6.8632 -7.6310 -4.2675 25 1 8.8238 -8.3100 -3.0118 26 1 6.8380 -9.7017 -3.0062 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.6768 1.9562 0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.1216 0.5946 5.2273 35 1 1.5944 -0.0938 7.7909 36 1 3.1078 -2.2309 7.7521 37 1 3.6216 -2.9600 2.8638 38 1 3.0539 -2.1790 -0.7955 39 1 3.7166 -4.6811 -1.5463 40 1 5.1744 -3.6598 -1.5519 41 1 6.2393 -5.1694 0.1016 42 1 4.7819 -6.1912 0.1077 43 1 7.5521 -8.5960 -0.2127 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293502287.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:43 Heat of formation + Delta-G solvation = 29.738141 kcal Electronic energy + Delta-G solvation = -25659.233317 eV Core-core repulsion = 21900.062797 eV Total energy + Delta-G solvation = -3759.170521 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.52287 -42.60565 -40.68813 -36.84946 -36.06516 -35.57993 -34.03548 -33.14421 -32.22707 -30.22352 -29.56914 -28.21866 -27.73096 -24.65260 -24.49150 -22.84778 -22.41967 -21.83879 -20.96471 -20.73287 -19.44989 -18.71026 -17.70726 -17.45301 -17.23317 -16.89458 -16.48066 -16.28952 -16.02375 -15.73708 -15.63929 -15.03684 -14.67230 -14.43241 -14.24528 -13.94665 -13.81346 -13.68969 -13.41709 -13.28109 -13.11871 -13.06240 -12.86435 -12.47091 -12.41240 -12.34709 -12.30426 -11.95047 -11.79627 -11.59641 -11.26716 -10.98853 -10.90257 -10.57030 -10.51411 -9.31740 -9.08813 -8.17287 -6.30852 0.06664 0.70113 0.85961 1.44156 1.44884 1.46653 1.57894 1.71388 1.72888 2.12648 2.19156 2.44095 3.16790 3.34961 3.50694 3.74376 3.89785 3.96754 4.06111 4.09751 4.19260 4.32216 4.40842 4.51915 4.61231 4.67274 4.68066 4.75715 4.79828 4.85032 4.94455 4.97842 5.03118 5.11549 5.21627 5.22371 5.46962 5.51673 5.55890 5.62040 5.81019 5.85983 6.08675 6.16623 6.22676 6.55181 6.87142 7.03726 7.39565 8.95495 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013008 B = 0.002980 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.926573 B = 9393.193053 C =11348.756290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.142 3.858 3 C -0.155 4.155 4 N -0.365 5.365 5 N -0.265 5.265 6 C 0.139 3.861 7 C 0.021 3.979 8 C -0.165 4.165 9 C -0.218 4.218 10 C -0.026 4.026 11 O -0.192 6.192 12 C -0.300 4.300 13 C 0.318 3.682 14 N -0.634 5.634 15 C 0.518 3.482 16 O -0.544 6.544 17 C -0.108 4.108 18 C 0.039 3.961 19 C -0.539 4.539 20 H 0.081 0.919 21 C -0.008 4.008 22 N -0.937 5.937 23 Si 0.972 3.028 24 H -0.250 1.250 25 H -0.283 1.283 26 H -0.283 1.283 27 H 0.109 0.891 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.124 0.876 31 H 0.059 0.941 32 H 0.052 0.948 33 H 0.109 0.891 34 H 0.163 0.837 35 H 0.186 0.814 36 H 0.245 0.755 37 H 0.145 0.855 38 H 0.431 0.569 39 H 0.118 0.882 40 H 0.118 0.882 41 H -0.015 1.015 42 H -0.015 1.015 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.741 21.030 2.718 25.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.043 3.957 3 C -0.213 4.213 4 N -0.155 5.155 5 N -0.091 5.091 6 C -0.024 4.024 7 C -0.030 4.030 8 C -0.187 4.187 9 C -0.236 4.236 10 C -0.094 4.094 11 O -0.088 6.088 12 C -0.332 4.332 13 C 0.097 3.903 14 N -0.285 5.285 15 C 0.308 3.692 16 O -0.418 6.418 17 C -0.147 4.147 18 C 0.001 3.999 19 C -0.577 4.577 20 H 0.099 0.901 21 C -0.205 4.205 22 N -0.578 5.578 23 Si 0.796 3.204 24 H -0.173 1.173 25 H -0.209 1.209 26 H -0.209 1.209 27 H 0.128 0.872 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.141 0.859 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.128 0.872 34 H 0.181 0.819 35 H 0.203 0.797 36 H 0.261 0.739 37 H 0.162 0.838 38 H 0.271 0.729 39 H 0.136 0.864 40 H 0.136 0.864 41 H 0.004 0.996 42 H 0.004 0.996 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.019 21.430 3.193 26.363 hybrid contribution 1.007 -1.438 -0.330 1.786 sum -14.012 19.992 2.863 24.581 Atomic orbital electron populations 1.22133 0.91854 1.02848 1.04508 1.21881 0.96859 0.94801 0.82201 1.22126 1.01289 0.93392 1.04505 1.49272 1.40034 1.20322 1.05874 1.77436 1.24102 1.21476 0.86059 1.19109 0.98355 0.95037 0.89860 1.18993 1.02630 0.93944 0.87474 1.22081 1.02783 1.00705 0.93120 1.22168 1.03994 0.99513 0.97971 1.25123 1.01204 0.99219 0.83883 1.84108 1.59350 1.47377 1.17927 1.21549 1.13842 1.07024 0.90800 1.18020 0.94566 0.88638 0.89056 1.43022 1.50626 1.27360 1.07502 1.21833 0.76147 0.78765 0.92467 1.90668 1.56621 1.66232 1.28298 1.21683 1.01960 0.97570 0.93536 1.18743 0.93579 0.92022 0.95567 1.21721 1.31140 1.11061 0.93782 0.90131 1.26122 0.96684 0.98670 0.99031 1.70186 1.38538 1.25221 1.23806 0.85296 0.77705 0.78047 0.79332 1.17342 1.20893 1.20905 0.87237 0.92227 0.92925 0.85872 0.92231 0.92919 0.87230 0.81903 0.79712 0.73948 0.83765 0.72868 0.86361 0.86364 0.99643 0.99646 0.92940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 9.45 71.98 0.68 -1.30 16 2 C 0.14 2.14 3.69 44.99 0.17 2.31 16 3 C -0.16 -1.98 9.45 71.98 0.68 -1.30 16 4 N -0.36 -9.34 3.30 -324.16 -1.07 -10.41 16 5 N -0.26 -7.96 12.41 -48.44 -0.60 -8.56 16 6 C 0.14 4.81 7.08 42.36 0.30 5.11 16 7 C 0.02 0.66 7.19 24.28 0.17 0.83 16 8 C -0.17 -4.13 10.81 22.40 0.24 -3.88 16 9 C -0.22 -4.21 10.89 22.13 0.24 -3.97 16 10 C -0.03 -0.55 12.08 67.01 0.81 0.26 16 11 O -0.19 -6.03 10.67 -6.56 -0.07 -6.10 16 12 C -0.30 -11.53 9.61 22.37 0.21 -11.32 16 13 C 0.32 9.96 7.67 131.05 1.00 10.97 16 14 N -0.63 -17.25 5.42 -308.28 -1.67 -18.92 16 15 C 0.52 19.16 7.79 87.65 0.68 19.84 16 16 O -0.54 -26.12 13.10 -3.08 -0.04 -26.16 16 17 C -0.11 -3.90 5.64 29.85 0.17 -3.73 16 18 C 0.04 2.05 4.26 29.85 0.13 2.17 16 19 C -0.54 -29.36 9.11 25.60 0.23 -29.13 16 20 H 0.08 3.93 7.74 -2.91 -0.02 3.90 16 21 C -0.01 -0.43 5.46 84.66 0.46 0.03 16 22 N -0.94 -58.61 13.29 21.45 0.28 -58.33 16 23 Si 0.97 43.28 29.54 68.60 2.03 45.31 16 24 H -0.25 -10.13 7.11 99.48 0.71 -9.43 16 25 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 26 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 27 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.12 1.17 6.81 -2.39 -0.02 1.16 16 31 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.16 3.53 8.06 -2.91 -0.02 3.51 16 35 H 0.19 2.16 8.06 -2.91 -0.02 2.14 16 36 H 0.24 2.72 8.06 -2.91 -0.02 2.70 16 37 H 0.14 6.57 5.81 -2.91 -0.02 6.55 16 38 H 0.43 7.24 7.53 -92.71 -0.70 6.54 16 39 H 0.12 3.56 8.14 -2.38 -0.02 3.54 16 40 H 0.12 3.56 8.14 -2.39 -0.02 3.54 16 41 H -0.01 -0.90 8.10 -2.39 -0.02 -0.92 16 42 H -0.01 -0.90 8.10 -2.39 -0.02 -0.92 16 43 H 0.26 15.37 8.31 -92.70 -0.77 14.60 16 Total: -1.00 -83.59 370.94 5.38 -78.21 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: 0.33 Total: 18.08 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: 6.19 Total: -13.11 kcal Atomic # 7 Polarization: -93.17 SS G_CDS: -3.06 Total: -96.23 kcal Atomic # 8 Polarization: -32.15 SS G_CDS: -0.11 Total: -32.26 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -83.59 5.38 -78.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293502287.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.948 kcal (2) G-P(sol) polarization free energy of solvation -83.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds