Wall clock time and date at job start Tue Mar 31 2020 11:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50695 * 120.00071 * 2 1 4 4 N 1.46505 * 109.47110 * 125.00056 * 3 2 1 5 5 C 1.46495 * 120.00093 * 270.00082 * 4 3 2 6 6 C 1.50698 * 109.47574 * 269.99988 * 5 4 3 7 7 H 1.08002 * 119.99552 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00258 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00041 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99893 * 179.97438 * 8 6 5 11 11 H 1.48491 * 109.47326 * 90.00306 * 10 8 6 12 12 H 1.48498 * 109.46997 * 210.00484 * 10 8 6 13 13 H 1.48503 * 109.47352 * 330.00295 * 10 8 6 14 14 C 1.34771 * 119.99937 * 90.00329 * 4 3 2 15 15 O 1.21281 * 120.00105 * 180.02562 * 14 4 3 16 16 C 1.50700 * 120.00071 * 359.97438 * 14 4 3 17 17 N 1.46501 * 109.47362 * 180.02562 * 16 14 4 18 18 C 1.38880 * 120.00136 * 180.02562 * 17 16 14 19 19 C 1.38957 * 120.17463 * 5.55541 * 18 17 16 20 20 C 1.37953 * 120.06338 * 179.97438 * 19 18 17 21 21 C 1.38610 * 120.42455 * 0.02562 * 20 19 18 22 22 C 1.37755 * 120.35011 * 359.97438 * 21 20 19 23 23 C 1.39730 * 119.92714 * 359.97438 * 22 21 20 24 24 C 1.47432 * 120.20702 * 180.02562 * 23 22 21 25 25 N 1.34773 * 120.00187 * 354.10732 * 24 23 22 26 26 O 1.21606 * 119.99741 * 174.10848 * 24 23 22 27 27 H 1.08002 * 119.99810 * 180.02562 * 1 2 3 28 28 H 1.07998 * 120.00033 * 359.97438 * 1 2 3 29 29 H 1.07998 * 120.00033 * 180.02562 * 2 1 3 30 30 H 1.09001 * 109.47215 * 5.00308 * 3 2 1 31 31 H 1.08997 * 109.47731 * 245.00092 * 3 2 1 32 32 H 1.09005 * 109.47112 * 30.00447 * 5 4 3 33 33 H 1.09003 * 109.46997 * 150.00021 * 5 4 3 34 34 H 0.97003 * 119.99799 * 179.97438 * 9 8 6 35 35 H 1.09000 * 109.47013 * 60.00215 * 16 14 4 36 36 H 1.09000 * 109.47172 * 300.00489 * 16 14 4 37 37 H 0.96997 * 119.99763 * 359.97438 * 17 16 14 38 38 H 1.07998 * 119.96750 * 0.25145 * 19 18 17 39 39 H 1.08004 * 119.78937 * 180.02562 * 20 19 18 40 40 H 1.07994 * 119.82784 * 179.97438 * 21 20 19 41 41 H 1.08001 * 120.03310 * 180.02562 * 22 21 20 42 42 H 0.97000 * 119.99487 * 359.97438 * 25 24 23 43 43 H 0.96994 * 119.99816 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3318 1.1315 5 6 2.5589 1.8648 2.4249 6 6 2.8443 3.3435 2.4805 7 1 3.3033 3.8370 1.6366 8 6 2.5185 4.0665 3.6084 9 7 1.9591 3.4657 4.6358 10 14 2.8729 5.8993 3.6776 11 1 1.7008 6.6500 3.1603 12 1 3.1363 6.2998 5.0831 13 1 4.0635 6.2051 2.8444 14 6 4.2497 0.8661 0.9824 15 8 5.0197 0.8879 1.9191 16 6 4.6969 0.3174 -0.3480 17 7 6.0912 -0.1217 -0.2514 18 6 6.7261 -0.6664 -1.3600 19 6 6.0826 -0.6913 -2.5913 20 6 6.7156 -1.2325 -3.6911 21 6 7.9945 -1.7550 -3.5784 22 6 8.6484 -1.7393 -2.3660 23 6 8.0214 -1.1938 -1.2428 24 6 8.7159 -1.1732 0.0576 25 7 9.9082 -1.7863 0.1946 26 8 8.2127 -0.6031 1.0066 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6213 1.4027 -0.9313 32 1 1.4888 1.6964 2.5460 33 1 3.0991 1.3601 3.2259 34 1 1.7302 3.9744 5.4294 35 1 4.6120 1.0937 -1.1083 36 1 4.0677 -0.5296 -0.6217 37 1 6.5712 -0.0313 0.5866 38 1 5.0877 -0.2825 -2.6884 39 1 6.2115 -1.2491 -4.6461 40 1 8.4808 -2.1767 -4.4455 41 1 9.6450 -2.1474 -2.2841 42 1 10.3093 -2.2414 -0.5623 43 1 10.3652 -1.7725 1.0500 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293618861.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:46 Heat of formation + Delta-G solvation = -42.287924 kcal Electronic energy + Delta-G solvation = -26094.336672 eV Core-core repulsion = 22332.042867 eV Total energy + Delta-G solvation = -3762.293805 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.48094 -40.75780 -39.13456 -37.42165 -36.45366 -35.14250 -34.67885 -33.71823 -31.89606 -31.17593 -29.67793 -27.61145 -26.85690 -24.95249 -24.68358 -22.47815 -21.90117 -21.15461 -20.02083 -19.18156 -18.67394 -18.31707 -17.89186 -17.51505 -17.06368 -16.69553 -16.58144 -16.07890 -15.91788 -15.86886 -15.53561 -15.03481 -14.86919 -14.65061 -14.25364 -14.23797 -14.14799 -13.85387 -13.38163 -13.27160 -13.02037 -12.88967 -12.84586 -12.60256 -12.28365 -12.22891 -12.06036 -11.71650 -11.14205 -10.97250 -10.77922 -10.75907 -10.67236 -10.32379 -9.87484 -9.56128 -8.41213 -8.25744 -6.40620 0.04650 0.73515 1.30123 1.33458 1.37242 1.47168 1.65570 1.92837 2.11378 2.36112 2.61860 2.69704 3.04108 3.04818 3.52277 3.92420 3.98635 4.03132 4.14068 4.23609 4.25085 4.29315 4.45496 4.54228 4.61095 4.70648 4.83623 4.95295 5.04552 5.05786 5.17767 5.24664 5.46264 5.50501 5.69379 5.70995 5.72627 5.84804 5.92237 5.96851 6.01875 6.27753 6.48794 6.61429 6.69004 6.81114 7.20766 7.35528 7.39243 8.81775 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013370 B = 0.003489 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.669934 B = 8024.221243 C = 9284.578521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.187 4.187 3 C 0.129 3.871 4 N -0.591 5.591 5 C 0.265 3.735 6 C -0.545 4.545 7 H 0.054 0.946 8 C 0.008 3.992 9 N -0.928 5.928 10 Si 0.969 3.031 11 H -0.259 1.259 12 H -0.281 1.281 13 H -0.275 1.275 14 C 0.487 3.513 15 O -0.589 6.589 16 C 0.111 3.889 17 N -0.734 5.734 18 C 0.251 3.749 19 C -0.224 4.224 20 C -0.033 4.033 21 C -0.193 4.193 22 C -0.029 4.029 23 C -0.260 4.260 24 C 0.557 3.443 25 N -0.829 5.829 26 O -0.598 6.598 27 H 0.116 0.884 28 H 0.100 0.900 29 H 0.114 0.886 30 H 0.082 0.918 31 H 0.111 0.889 32 H 0.027 0.973 33 H -0.008 1.008 34 H 0.267 0.733 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.414 0.586 38 H 0.140 0.860 39 H 0.158 0.842 40 H 0.157 0.843 41 H 0.156 0.844 42 H 0.418 0.582 43 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.996 -13.571 -23.108 28.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.206 4.206 3 C 0.007 3.993 4 N -0.321 5.321 5 C 0.144 3.856 6 C -0.584 4.584 7 H 0.072 0.928 8 C -0.191 4.191 9 N -0.567 5.567 10 Si 0.793 3.207 11 H -0.183 1.183 12 H -0.207 1.207 13 H -0.200 1.200 14 C 0.276 3.724 15 O -0.470 6.470 16 C -0.016 4.016 17 N -0.374 5.374 18 C 0.141 3.859 19 C -0.247 4.247 20 C -0.052 4.052 21 C -0.213 4.213 22 C -0.048 4.048 23 C -0.268 4.268 24 C 0.346 3.654 25 N -0.393 5.393 26 O -0.481 6.481 27 H 0.135 0.865 28 H 0.118 0.882 29 H 0.132 0.868 30 H 0.101 0.899 31 H 0.129 0.871 32 H 0.045 0.955 33 H 0.011 0.989 34 H 0.076 0.924 35 H 0.131 0.869 36 H 0.134 0.866 37 H 0.263 0.737 38 H 0.158 0.842 39 H 0.175 0.825 40 H 0.175 0.825 41 H 0.174 0.826 42 H 0.251 0.749 43 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 8.696 -13.054 -21.892 26.931 hybrid contribution 0.505 0.865 1.455 1.767 sum 9.201 -12.189 -20.437 25.513 Atomic orbital electron populations 1.24060 0.95482 1.02952 0.97865 1.23303 0.96862 0.98124 1.02268 1.20943 0.92796 0.96692 0.88840 1.48149 1.11170 1.59308 1.13506 1.18716 0.93994 0.92727 0.80192 1.21701 1.40742 0.94334 1.01578 0.92781 1.25872 0.94594 1.03899 0.94778 1.70058 1.42743 1.38139 1.05771 0.85399 0.78892 0.78981 0.77438 1.18336 1.20662 1.20044 1.21188 0.82149 0.78254 0.90858 1.90690 1.54005 1.58271 1.44001 1.21265 0.84786 1.01599 0.93983 1.45678 1.12047 1.65058 1.14572 1.18271 0.90732 0.89048 0.87826 1.20985 1.02814 1.09910 0.90997 1.21511 0.94329 0.91177 0.98174 1.21232 0.96132 1.05744 0.98173 1.21347 0.99503 0.93160 0.90782 1.19384 0.96586 1.15942 0.94918 1.18670 0.81697 0.77169 0.87853 1.43442 1.20867 1.57096 1.17899 1.90594 1.66896 1.47473 1.43138 0.86539 0.88166 0.86838 0.89941 0.87082 0.95546 0.98940 0.92366 0.86935 0.86638 0.73706 0.84176 0.82484 0.82541 0.82626 0.74920 0.75993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.87 14.32 67.78 0.97 -2.89 16 2 C -0.19 -4.90 9.74 25.64 0.25 -4.65 16 3 C 0.13 3.99 5.65 85.63 0.48 4.47 16 4 N -0.59 -25.99 2.44 -830.51 -2.03 -28.02 16 5 C 0.26 14.87 5.16 85.63 0.44 15.31 16 6 C -0.55 -32.49 9.39 25.60 0.24 -32.25 16 7 H 0.05 3.18 7.81 -2.91 -0.02 3.16 16 8 C 0.01 0.45 5.46 84.65 0.46 0.92 16 9 N -0.93 -57.72 13.29 21.45 0.28 -57.43 16 10 Si 0.97 46.34 29.54 68.60 2.03 48.37 16 11 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 12 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 13 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 14 C 0.49 22.00 7.74 87.66 0.68 22.68 16 15 O -0.59 -33.89 15.25 -3.03 -0.05 -33.94 16 16 C 0.11 3.54 3.97 85.63 0.34 3.88 16 17 N -0.73 -26.41 5.56 -342.53 -1.90 -28.31 16 18 C 0.25 7.11 6.65 38.71 0.26 7.37 16 19 C -0.22 -4.54 9.30 22.37 0.21 -4.33 16 20 C -0.03 -0.46 10.03 22.29 0.22 -0.23 16 21 C -0.19 -2.36 10.02 22.24 0.22 -2.14 16 22 C -0.03 -0.44 9.52 22.52 0.21 -0.23 16 23 C -0.26 -6.55 5.89 -19.98 -0.12 -6.67 16 24 C 0.56 16.20 8.02 86.67 0.69 16.89 16 25 N -0.83 -14.22 8.82 -175.88 -1.55 -15.77 16 26 O -0.60 -24.82 14.48 -4.05 -0.06 -24.88 16 27 H 0.12 2.22 8.06 -2.91 -0.02 2.19 16 28 H 0.10 2.32 7.84 -2.91 -0.02 2.30 16 29 H 0.11 2.78 7.83 -2.91 -0.02 2.76 16 30 H 0.08 2.68 7.72 -2.39 -0.02 2.66 16 31 H 0.11 2.57 6.44 -2.39 -0.02 2.55 16 32 H 0.03 1.50 8.07 -2.38 -0.02 1.48 16 33 H -0.01 -0.49 7.42 -2.39 -0.02 -0.51 16 34 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 35 H 0.11 2.91 6.98 -2.39 -0.02 2.90 16 36 H 0.12 2.91 7.76 -2.39 -0.02 2.89 16 37 H 0.41 18.47 3.95 -94.60 -0.37 18.10 16 38 H 0.14 2.35 6.72 -2.91 -0.02 2.33 16 39 H 0.16 1.12 8.06 -2.91 -0.02 1.09 16 40 H 0.16 0.87 8.06 -2.91 -0.02 0.85 16 41 H 0.16 1.10 6.45 -2.91 -0.02 1.08 16 42 H 0.42 3.55 6.89 -92.71 -0.64 2.91 16 43 H 0.41 6.42 8.93 -92.71 -0.83 5.59 16 Total: -1.00 -89.90 364.85 1.52 -88.38 By element: Atomic # 1 Polarization: 34.24 SS G_CDS: -0.77 Total: 33.47 kcal Atomic # 6 Polarization: 12.56 SS G_CDS: 5.57 Total: 18.13 kcal Atomic # 7 Polarization: -124.34 SS G_CDS: -5.20 Total: -129.53 kcal Atomic # 8 Polarization: -58.71 SS G_CDS: -0.10 Total: -58.82 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -89.90 1.52 -88.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293618861.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.091 kcal (2) G-P(sol) polarization free energy of solvation -89.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds