Wall clock time and date at job start Tue Mar 31 2020 12:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08992 * 110.21743 * 2 1 4 4 C 1.54480 * 110.24505 * 237.98012 * 2 1 3 5 5 C 1.54635 * 101.76477 * 215.58643 * 4 2 1 6 6 H 1.08999 * 110.59412 * 143.53099 * 5 4 2 7 7 N 1.46491 * 110.48485 * 266.11721 * 5 4 2 8 8 C 1.37336 * 120.00199 * 201.22730 * 7 5 4 9 9 O 1.35102 * 119.99860 * 0.02562 * 8 7 5 10 10 N 1.30097 * 120.00424 * 180.02562 * 8 7 5 11 11 C 1.46503 * 119.99999 * 180.02562 * 10 8 7 12 12 C 1.50696 * 109.47117 * 115.00421 * 11 10 8 13 13 H 1.08007 * 120.00417 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00351 * 180.02562 * 12 11 10 15 15 N 1.31520 * 119.99647 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00290 * 179.72012 * 14 12 11 17 17 H 1.48497 * 109.47111 * 59.99723 * 16 14 12 18 18 H 1.48504 * 109.46982 * 179.97438 * 16 14 12 19 19 H 1.48493 * 109.47220 * 299.99541 * 16 14 12 20 20 C 1.51280 * 104.19373 * 24.79813 * 5 4 2 21 21 O 1.21285 * 124.94029 * 163.71107 * 20 5 4 22 22 N 1.34414 * 110.11676 * 343.74976 * 20 5 4 23 23 C 1.39926 * 124.34945 * 179.57605 * 22 20 5 24 24 C 1.38873 * 120.07032 * 293.21698 * 23 22 20 25 25 C 1.38109 * 119.93025 * 179.75143 * 24 23 22 26 26 C 1.38280 * 120.07009 * 0.52221 * 25 24 23 27 27 C 1.38281 * 120.14232 * 359.75124 * 26 25 24 28 28 C 1.38114 * 120.06743 * 359.97438 * 27 26 25 29 29 H 1.08996 * 109.47147 * 302.83545 * 1 2 3 30 30 H 1.08997 * 109.47084 * 62.83162 * 1 2 3 31 31 H 1.08995 * 109.47404 * 182.83377 * 1 2 3 32 32 H 1.08997 * 110.97018 * 97.46758 * 4 2 1 33 33 H 1.09001 * 110.97134 * 333.70268 * 4 2 1 34 34 H 0.97005 * 120.00087 * 21.23141 * 7 5 4 35 35 H 0.96700 * 113.99577 * 359.97438 * 9 8 7 36 36 H 1.09000 * 109.47247 * 354.99664 * 11 10 8 37 37 H 1.09008 * 109.46871 * 234.99669 * 11 10 8 38 38 H 0.96999 * 119.99591 * 180.02562 * 15 14 12 39 39 H 1.07998 * 120.03341 * 0.02562 * 24 23 22 40 40 H 1.08001 * 119.96284 * 180.27546 * 25 24 23 41 41 H 1.08005 * 119.92905 * 179.72868 * 26 25 24 42 42 H 1.08001 * 119.96517 * 179.97438 * 27 26 25 43 43 H 1.07998 * 120.03184 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9067 1.0228 0.0000 4 6 2.0646 -0.7685 -1.2289 5 6 3.3288 -1.4464 -0.6514 6 1 3.4614 -2.4394 -1.0808 7 7 4.5124 -0.6196 -0.8992 8 6 5.7630 -1.1870 -0.8783 9 8 5.9015 -2.5076 -0.6296 10 7 6.8142 -0.4527 -1.0979 11 6 8.1481 -1.0581 -1.0761 12 6 8.7589 -0.9774 -2.4514 13 1 8.2084 -0.5212 -3.2610 14 6 10.0201 -1.4869 -2.6766 15 7 10.6904 -2.0429 -1.6910 16 14 10.7741 -1.3939 -4.3832 17 1 10.8815 0.0273 -4.8001 18 1 12.1267 -2.0064 -4.3608 19 1 9.9136 -2.1283 -5.3452 20 6 3.0523 -1.5439 0.8327 21 8 3.6574 -2.2549 1.6068 22 7 2.0379 -0.7284 1.1685 23 6 1.5310 -0.5917 2.4656 24 6 0.8750 -1.6550 3.0719 25 6 0.3803 -1.5186 4.3541 26 6 0.5281 -0.3214 5.0301 27 6 1.1758 0.7411 4.4270 28 6 1.6777 0.6093 3.1471 29 1 -0.3633 0.5572 0.8634 30 1 -0.3633 0.4692 -0.9143 31 1 -0.3634 -1.0263 0.0508 32 1 2.3237 -0.0826 -2.0354 33 1 1.3435 -1.5123 -1.5678 34 1 4.4130 0.3286 -1.0781 35 1 5.0653 -2.9692 -0.4785 36 1 8.0683 -2.1025 -0.7746 37 1 8.7787 -0.5222 -0.3666 38 1 11.5778 -2.4010 -1.8494 39 1 0.7557 -2.5890 2.5430 40 1 -0.1260 -2.3467 4.8279 41 1 0.1365 -0.2158 6.0311 42 1 1.2892 1.6751 4.9574 43 1 2.1838 1.4394 2.6768 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331129837.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:30 Heat of formation + Delta-G solvation = -42.079606 kcal Electronic energy + Delta-G solvation = -26177.525016 eV Core-core repulsion = 22415.240244 eV Total energy + Delta-G solvation = -3762.284772 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.37629 -40.38051 -39.47376 -38.06613 -35.91252 -35.83240 -34.18517 -33.07327 -31.93480 -31.11017 -29.90973 -28.52214 -25.66862 -24.75970 -23.94443 -23.64973 -22.20472 -21.90451 -20.78274 -20.15818 -18.63732 -18.47017 -18.00685 -17.19501 -16.96671 -16.70778 -16.26514 -16.08026 -15.56965 -15.44672 -15.28875 -14.91126 -14.61286 -14.51150 -14.38757 -14.34508 -14.05149 -13.74356 -13.65045 -13.40209 -12.94127 -12.87544 -12.70229 -12.59778 -12.37116 -12.18960 -12.13828 -11.98107 -11.94388 -11.70075 -10.86780 -10.74886 -10.38943 -10.17836 -9.95312 -9.46136 -9.04337 -8.16933 -6.33716 0.21943 0.38758 1.08372 1.37335 1.44149 1.52011 1.71571 1.92054 2.15543 2.43149 2.71486 3.02256 3.11638 3.19380 3.27683 3.67532 3.90952 3.95782 3.99173 4.18435 4.21083 4.28694 4.47044 4.52216 4.53490 4.60763 4.72654 4.85023 4.95915 5.02529 5.04189 5.16302 5.28442 5.31074 5.36773 5.37293 5.41816 5.52964 5.59346 5.69982 5.88262 6.03822 6.14797 6.34963 6.73812 6.92690 7.01885 7.28493 7.55744 8.90884 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023960 B = 0.002707 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.347066 B =10339.537335 C =10850.579119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.120 3.880 3 H 0.096 0.904 4 C -0.113 4.113 5 C 0.115 3.885 6 H 0.127 0.873 7 N -0.702 5.702 8 C 0.540 3.460 9 O -0.517 6.517 10 N -0.616 5.616 11 C 0.219 3.781 12 C -0.529 4.529 13 H 0.057 0.943 14 C -0.005 4.005 15 N -0.937 5.937 16 Si 0.982 3.018 17 H -0.264 1.264 18 H -0.277 1.277 19 H -0.265 1.265 20 C 0.492 3.508 21 O -0.560 6.560 22 N -0.562 5.562 23 C 0.129 3.871 24 C -0.128 4.128 25 C -0.113 4.113 26 C -0.122 4.122 27 C -0.112 4.112 28 C -0.135 4.135 29 H 0.054 0.946 30 H 0.101 0.899 31 H 0.062 0.938 32 H 0.130 0.870 33 H 0.132 0.868 34 H 0.427 0.573 35 H 0.397 0.603 36 H -0.021 1.021 37 H -0.008 1.008 38 H 0.266 0.734 39 H 0.118 0.882 40 H 0.147 0.853 41 H 0.151 0.849 42 H 0.148 0.852 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.786 4.845 6.408 33.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.020 3.980 3 H 0.114 0.886 4 C -0.150 4.150 5 C 0.005 3.995 6 H 0.144 0.856 7 N -0.357 5.357 8 C 0.225 3.775 9 O -0.312 6.312 10 N -0.363 5.363 11 C 0.091 3.909 12 C -0.568 4.568 13 H 0.075 0.925 14 C -0.202 4.202 15 N -0.577 5.577 16 Si 0.805 3.195 17 H -0.189 1.189 18 H -0.202 1.202 19 H -0.190 1.190 20 C 0.278 3.722 21 O -0.436 6.436 22 N -0.291 5.291 23 C 0.039 3.961 24 C -0.148 4.148 25 C -0.131 4.131 26 C -0.140 4.140 27 C -0.130 4.130 28 C -0.154 4.154 29 H 0.073 0.927 30 H 0.119 0.881 31 H 0.081 0.919 32 H 0.148 0.852 33 H 0.150 0.850 34 H 0.267 0.733 35 H 0.253 0.747 36 H -0.003 1.003 37 H 0.010 0.990 38 H 0.075 0.925 39 H 0.136 0.864 40 H 0.164 0.836 41 H 0.169 0.831 42 H 0.166 0.834 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -31.473 4.960 6.718 32.562 hybrid contribution 0.527 -0.882 0.048 1.029 sum -30.946 4.077 6.766 31.938 Atomic orbital electron populations 1.22031 0.91622 1.03170 1.03950 1.22199 0.96832 0.96482 0.82535 0.88583 1.23116 0.93017 1.01651 0.97234 1.21820 0.87740 0.99109 0.90818 0.85588 1.43998 0.99500 1.12716 1.79535 1.20965 0.88264 0.78825 0.89416 1.85334 1.38030 1.20423 1.87441 1.72355 0.99349 1.32054 1.32585 1.18856 0.84726 0.91309 0.96038 1.21459 1.01452 1.38410 0.95455 0.92481 1.26119 0.97286 0.94414 1.02387 1.70127 1.13191 1.40194 1.34188 0.85260 0.77260 0.78953 0.78016 1.18907 1.20233 1.19013 1.22208 0.78918 0.78665 0.92393 1.90765 1.52413 1.42009 1.58416 1.45921 1.33574 1.42454 1.07181 1.17654 0.98160 0.95288 0.84999 1.21357 0.98207 0.98316 0.96915 1.21363 0.99333 0.98852 0.93597 1.21576 0.98674 0.92684 1.01089 1.21381 0.97246 1.00353 0.94052 1.21409 1.00809 0.97397 0.95827 0.92679 0.88057 0.91865 0.85152 0.85034 0.73262 0.74730 1.00316 0.99015 0.92497 0.86379 0.83557 0.83101 0.83386 0.85493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 8.86 71.98 0.64 -0.36 16 2 C 0.12 1.26 3.86 45.45 0.18 1.43 16 3 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 4 C -0.11 -0.91 6.28 31.65 0.20 -0.71 16 5 C 0.11 2.19 2.89 44.99 0.13 2.32 16 6 H 0.13 2.12 6.73 -2.39 -0.02 2.11 16 7 N -0.70 -19.39 5.23 -441.63 -2.31 -21.70 16 8 C 0.54 23.05 8.78 179.63 1.58 24.62 16 9 O -0.52 -22.71 11.99 -83.78 -1.00 -23.72 16 10 N -0.62 -32.81 10.59 -469.71 -4.97 -37.79 16 11 C 0.22 14.02 6.09 85.63 0.52 14.54 16 12 C -0.53 -34.16 9.39 25.60 0.24 -33.92 16 13 H 0.06 3.59 7.81 -2.91 -0.02 3.56 16 14 C 0.00 -0.29 5.46 84.65 0.46 0.18 16 15 N -0.94 -61.64 13.29 21.45 0.28 -61.36 16 16 Si 0.98 47.44 29.54 68.60 2.03 49.47 16 17 H -0.26 -12.18 7.11 99.48 0.71 -11.47 16 18 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 19 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 20 C 0.49 12.65 7.52 87.90 0.66 13.31 16 21 O -0.56 -20.38 17.31 -3.04 -0.05 -20.43 16 22 N -0.56 -10.83 2.82 -605.50 -1.71 -12.53 16 23 C 0.13 2.66 4.52 38.15 0.17 2.84 16 24 C -0.13 -2.51 9.87 22.39 0.22 -2.29 16 25 C -0.11 -1.74 10.04 22.25 0.22 -1.52 16 26 C -0.12 -1.65 10.04 22.29 0.22 -1.43 16 27 C -0.11 -1.67 10.04 22.25 0.22 -1.44 16 28 C -0.13 -2.51 9.94 22.39 0.22 -2.29 16 29 H 0.05 0.49 7.87 -2.39 -0.02 0.47 16 30 H 0.10 0.21 8.14 -2.39 -0.02 0.19 16 31 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.13 0.61 8.03 -2.39 -0.02 0.59 16 33 H 0.13 0.42 7.91 -2.39 -0.02 0.40 16 34 H 0.43 10.27 8.68 -92.70 -0.81 9.46 16 35 H 0.40 13.00 6.09 -74.06 -0.45 12.55 16 36 H -0.02 -1.45 6.74 -2.39 -0.02 -1.47 16 37 H -0.01 -0.55 8.14 -2.38 -0.02 -0.57 16 38 H 0.27 16.24 8.31 -92.71 -0.77 15.47 16 39 H 0.12 2.30 8.06 -2.91 -0.02 2.27 16 40 H 0.15 1.55 8.06 -2.91 -0.02 1.52 16 41 H 0.15 1.19 8.06 -2.91 -0.02 1.16 16 42 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 43 H 0.13 2.19 8.06 -2.91 -0.02 2.17 16 Total: -1.00 -93.15 366.68 -2.06 -95.21 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -0.21 Total: 17.56 kcal Atomic # 6 Polarization: 9.39 SS G_CDS: 5.89 Total: 15.28 kcal Atomic # 7 Polarization: -124.67 SS G_CDS: -8.71 Total: -133.38 kcal Atomic # 8 Polarization: -43.09 SS G_CDS: -1.06 Total: -44.15 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 2.03 Total: 49.47 kcal Total: -93.15 -2.06 -95.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331129837.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.130 kcal (2) G-P(sol) polarization free energy of solvation -93.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds