Wall clock time and date at job start Tue Mar 31 2020 12:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 110.21243 * 2 1 4 4 C 1.54477 * 110.24551 * 237.98259 * 2 1 3 5 5 C 1.54634 * 101.76132 * 215.58144 * 4 2 1 6 6 H 1.09002 * 110.59614 * 266.06110 * 5 4 2 7 7 N 1.46506 * 110.48657 * 143.47482 * 5 4 2 8 8 C 1.37331 * 119.99771 * 158.77214 * 7 5 4 9 9 O 1.35094 * 120.00139 * 359.97438 * 8 7 5 10 10 N 1.30104 * 119.99818 * 180.02562 * 8 7 5 11 11 C 1.46498 * 120.00256 * 180.02562 * 10 8 7 12 12 C 1.50695 * 109.47439 * 114.99431 * 11 10 8 13 13 H 1.08002 * 119.99947 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00143 * 179.97438 * 12 11 10 15 15 N 1.31521 * 119.99861 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 120.00246 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47208 * 89.99914 * 16 14 12 18 18 H 1.48498 * 109.47563 * 210.00349 * 16 14 12 19 19 H 1.48505 * 109.47189 * 330.00361 * 16 14 12 20 20 C 1.51276 * 104.19661 * 24.79597 * 5 4 2 21 21 O 1.21293 * 124.94205 * 163.71215 * 20 5 4 22 22 N 1.34420 * 110.11623 * 343.74795 * 20 5 4 23 23 C 1.39928 * 124.35015 * 179.57027 * 22 20 5 24 24 C 1.38869 * 120.06887 * 293.22238 * 23 22 20 25 25 C 1.38122 * 119.92498 * 179.74627 * 24 23 22 26 26 C 1.38278 * 120.06891 * 0.52785 * 25 24 23 27 27 C 1.38286 * 120.14561 * 359.74693 * 26 25 24 28 28 C 1.38112 * 120.06518 * 359.97438 * 27 26 25 29 29 H 1.09004 * 109.47132 * 302.83214 * 1 2 3 30 30 H 1.09003 * 109.47387 * 62.83591 * 1 2 3 31 31 H 1.09003 * 109.46506 * 182.83541 * 1 2 3 32 32 H 1.09001 * 110.97475 * 97.46272 * 4 2 1 33 33 H 1.09003 * 110.96875 * 333.69825 * 4 2 1 34 34 H 0.96995 * 119.99785 * 338.76830 * 7 5 4 35 35 H 0.96689 * 114.00218 * 0.02562 * 9 8 7 36 36 H 1.09007 * 109.46783 * 354.99037 * 11 10 8 37 37 H 1.08998 * 109.47094 * 234.99734 * 11 10 8 38 38 H 0.96999 * 120.00095 * 179.97438 * 15 14 12 39 39 H 1.07997 * 120.03919 * 0.02562 * 24 23 22 40 40 H 1.07998 * 119.96470 * 180.27566 * 25 24 23 41 41 H 1.08006 * 119.92708 * 179.72051 * 26 25 24 42 42 H 1.07996 * 119.96710 * 179.97438 * 27 26 25 43 43 H 1.08002 * 120.03079 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9067 1.0229 0.0000 4 6 2.0646 -0.7684 -1.2289 5 6 3.3288 -1.4462 -0.6514 6 1 4.2109 -0.8328 -0.8357 7 7 3.5042 -2.7811 -1.2290 8 6 4.7403 -3.3793 -1.2127 9 8 5.7946 -2.7366 -0.6645 10 7 4.8962 -4.5645 -1.7261 11 6 6.2146 -5.2030 -1.7083 12 6 6.1656 -6.4326 -0.8385 13 1 5.2446 -6.7105 -0.3477 14 6 7.2966 -7.2028 -0.6693 15 7 8.4183 -6.8641 -1.2667 16 14 7.2361 -8.7266 0.4094 17 1 6.8603 -9.9027 -0.4158 18 1 8.5710 -8.9554 1.0184 19 1 6.2288 -8.5333 1.4832 20 6 3.0524 -1.5436 0.8327 21 8 3.6577 -2.2547 1.6069 22 7 2.0380 -0.7282 1.1686 23 6 1.5310 -0.5916 2.4656 24 6 0.8751 -1.6549 3.0719 25 6 0.3805 -1.5185 4.3543 26 6 0.5282 -0.3212 5.0301 27 6 1.1758 0.7414 4.4270 28 6 1.6777 0.6095 3.1471 29 1 -0.3634 0.5572 0.8635 30 1 -0.3634 0.4692 -0.9143 31 1 -0.3632 -1.0265 0.0508 32 1 2.3236 -0.0826 -2.0355 33 1 1.3435 -1.5122 -1.5678 34 1 2.7473 -3.2423 -1.6228 35 1 5.5814 -1.8628 -0.3098 36 1 6.9509 -4.5050 -1.3097 37 1 6.4947 -5.4865 -2.7228 38 1 9.2141 -7.4058 -1.1474 39 1 0.7559 -2.5890 2.5431 40 1 -0.1257 -2.3465 4.8281 41 1 0.1365 -0.2157 6.0311 42 1 1.2891 1.6753 4.9574 43 1 2.1837 1.4397 2.6768 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331129839.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:34 Heat of formation + Delta-G solvation = -7.336413 kcal Electronic energy + Delta-G solvation = -26248.464479 eV Core-core repulsion = 22487.686284 eV Total energy + Delta-G solvation = -3760.778194 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.44233 -39.23073 -38.24002 -37.01975 -34.75787 -33.70576 -32.57423 -31.73077 -31.24268 -30.28445 -28.84674 -26.59012 -24.74173 -23.35794 -23.06410 -22.32762 -21.59139 -20.08830 -19.86115 -18.63070 -17.69046 -17.02913 -16.54084 -16.19579 -16.00973 -15.45327 -14.98148 -14.56291 -14.42616 -14.21740 -14.03308 -13.73839 -13.62569 -13.55328 -13.31429 -13.03685 -12.85075 -12.77442 -12.44691 -12.11215 -11.87452 -11.81227 -11.61014 -11.48933 -11.38222 -10.76572 -10.66070 -10.60923 -9.91486 -9.78378 -9.57587 -9.25433 -9.20630 -8.68721 -8.50850 -7.96737 -7.20531 -5.82398 -3.83754 0.93320 1.08695 2.24274 2.54563 3.31685 3.40161 3.44318 3.48114 3.54140 3.65996 3.97472 4.08806 4.34058 4.40758 4.59888 4.62281 4.64406 4.65071 4.74318 4.80839 4.83518 5.08937 5.12205 5.24416 5.26108 5.29427 5.41460 5.49848 5.51211 5.68445 5.72316 6.02587 6.12451 6.20583 6.31307 6.39650 6.54038 6.69306 6.82002 7.61721 7.75393 7.81541 7.97034 8.13381 8.50967 8.61769 9.15549 9.41325 9.80391 11.26894 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015732 B = 0.003166 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.439561 B = 8842.878775 C =10001.585153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.133 3.867 3 H 0.088 0.912 4 C -0.127 4.127 5 C 0.121 3.879 6 H 0.115 0.885 7 N -0.724 5.724 8 C 0.521 3.479 9 O -0.496 6.496 10 N -0.572 5.572 11 C 0.201 3.799 12 C -0.499 4.499 13 H 0.057 0.943 14 C 0.053 3.947 15 N -0.901 5.901 16 Si 0.898 3.102 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.275 1.275 20 C 0.493 3.507 21 O -0.486 6.486 22 N -0.577 5.577 23 C 0.154 3.846 24 C -0.110 4.110 25 C -0.107 4.107 26 C -0.122 4.122 27 C -0.111 4.111 28 C -0.123 4.123 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.105 0.895 33 H 0.096 0.904 34 H 0.417 0.583 35 H 0.371 0.629 36 H 0.013 0.987 37 H 0.032 0.968 38 H 0.259 0.741 39 H 0.124 0.876 40 H 0.127 0.873 41 H 0.124 0.876 42 H 0.126 0.874 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.995 23.509 5.919 32.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.030 3.970 3 H 0.106 0.894 4 C -0.165 4.165 5 C 0.010 3.990 6 H 0.132 0.868 7 N -0.378 5.378 8 C 0.207 3.793 9 O -0.287 6.287 10 N -0.316 5.316 11 C 0.075 3.925 12 C -0.538 4.538 13 H 0.076 0.924 14 C -0.147 4.147 15 N -0.541 5.541 16 Si 0.726 3.274 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.200 1.200 20 C 0.278 3.722 21 O -0.356 6.356 22 N -0.310 5.310 23 C 0.064 3.936 24 C -0.129 4.129 25 C -0.126 4.126 26 C -0.140 4.140 27 C -0.129 4.129 28 C -0.142 4.142 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.123 0.877 33 H 0.115 0.885 34 H 0.256 0.744 35 H 0.223 0.777 36 H 0.031 0.969 37 H 0.050 0.950 38 H 0.069 0.931 39 H 0.142 0.858 40 H 0.145 0.855 41 H 0.142 0.858 42 H 0.144 0.856 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -20.257 22.026 5.913 30.504 hybrid contribution 0.169 -0.072 1.121 1.136 sum -20.088 21.954 7.033 30.578 Atomic orbital electron populations 1.22099 0.93430 1.03274 1.02965 1.21790 0.95604 0.96031 0.83577 0.89438 1.22972 0.95860 1.00426 0.97242 1.21410 1.00529 0.87004 0.90084 0.86792 1.43965 1.09588 1.16864 1.67397 1.20706 0.78914 0.88833 0.90889 1.85391 1.34422 1.33932 1.74978 1.72474 1.29583 1.03025 1.26525 1.19348 0.82951 0.93305 0.96940 1.21208 0.96170 1.08501 1.27935 0.92426 1.24980 0.95332 0.98097 0.96338 1.69974 1.00702 1.39269 1.44154 0.86488 0.77125 0.83094 0.80659 1.20665 1.21272 1.19974 1.21900 0.79468 0.79071 0.91759 1.90864 1.50500 1.37787 1.56488 1.45830 1.34958 1.44049 1.06145 1.17391 0.97201 0.94501 0.84495 1.21320 0.96878 0.98742 0.95972 1.21083 0.99576 0.97809 0.94118 1.21213 0.99506 0.93269 1.00055 1.21025 0.98202 0.99124 0.94578 1.21202 1.00621 0.97397 0.94989 0.91827 0.90590 0.91631 0.87675 0.88503 0.74440 0.77724 0.96934 0.95034 0.93099 0.85829 0.85531 0.85784 0.85608 0.85781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.78 8.86 37.16 0.33 -0.46 16 2 C 0.13 0.78 3.86 -67.01 -0.26 0.52 16 3 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 4 C -0.13 -0.72 6.37 -25.10 -0.16 -0.88 16 5 C 0.12 1.25 2.89 -67.94 -0.20 1.05 16 6 H 0.11 0.97 6.73 -51.93 -0.35 0.62 16 7 N -0.72 -10.67 5.26 -56.02 -0.29 -10.96 16 8 C 0.52 11.08 8.78 -88.57 -0.78 10.30 16 9 O -0.50 -10.53 11.99 -16.99 -0.20 -10.74 16 10 N -0.57 -14.89 10.59 -63.71 -0.67 -15.56 16 11 C 0.20 6.14 6.09 -5.20 -0.03 6.11 16 12 C -0.50 -16.13 9.39 -34.44 -0.32 -16.45 16 13 H 0.06 1.88 7.81 -52.49 -0.41 1.47 16 14 C 0.05 1.66 5.46 -17.82 -0.10 1.57 16 15 N -0.90 -29.15 13.29 55.43 0.74 -28.41 16 16 Si 0.90 23.79 29.54 -169.99 -5.02 18.77 16 17 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 18 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 19 H -0.27 -7.24 7.11 56.52 0.40 -6.84 16 20 C 0.49 6.60 7.48 -10.86 -0.08 6.51 16 21 O -0.49 -9.29 17.69 5.55 0.10 -9.20 16 22 N -0.58 -5.74 2.82 -105.25 -0.30 -6.04 16 23 C 0.15 1.63 4.52 -83.69 -0.38 1.25 16 24 C -0.11 -1.21 9.87 -39.39 -0.39 -1.60 16 25 C -0.11 -0.99 10.04 -39.61 -0.40 -1.39 16 26 C -0.12 -0.97 10.04 -39.55 -0.40 -1.37 16 27 C -0.11 -0.86 10.04 -39.61 -0.40 -1.26 16 28 C -0.12 -1.08 9.94 -39.39 -0.39 -1.47 16 29 H 0.06 0.34 7.87 -51.93 -0.41 -0.07 16 30 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.10 0.52 7.57 -51.93 -0.39 0.13 16 34 H 0.42 5.64 8.50 -40.82 -0.35 5.30 16 35 H 0.37 5.80 6.44 45.56 0.29 6.10 16 36 H 0.01 0.41 6.74 -51.92 -0.35 0.06 16 37 H 0.03 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 39 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 40 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 41 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 42 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 43 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 LS Contribution 367.08 15.07 5.53 5.53 Total: -1.00 -41.53 367.08 -9.40 -50.92 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -5.33 Total: 3.23 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: -3.95 Total: 2.44 kcal Atomic # 7 Polarization: -60.44 SS G_CDS: -0.53 Total: -60.97 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -0.11 Total: -19.93 kcal Atomic # 14 Polarization: 23.79 SS G_CDS: -5.02 Total: 18.77 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -41.53 -9.40 -50.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331129839.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.588 kcal (2) G-P(sol) polarization free energy of solvation -41.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds