Wall clock time and date at job start Tue Mar 31 2020 12:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 110.21243 * 2 1 4 4 C 1.54477 * 110.24551 * 237.98259 * 2 1 3 5 5 C 1.54634 * 101.76132 * 215.58144 * 4 2 1 6 6 H 1.09002 * 110.59614 * 266.06110 * 5 4 2 7 7 N 1.46506 * 110.48657 * 143.47482 * 5 4 2 8 8 C 1.37331 * 119.99771 * 158.77214 * 7 5 4 9 9 O 1.35094 * 120.00139 * 359.97438 * 8 7 5 10 10 N 1.30104 * 119.99818 * 180.02562 * 8 7 5 11 11 C 1.46498 * 120.00256 * 180.02562 * 10 8 7 12 12 C 1.50695 * 109.47439 * 114.99431 * 11 10 8 13 13 H 1.08002 * 119.99947 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00143 * 179.97438 * 12 11 10 15 15 N 1.31521 * 119.99861 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 120.00246 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47208 * 89.99914 * 16 14 12 18 18 H 1.48498 * 109.47563 * 210.00349 * 16 14 12 19 19 H 1.48505 * 109.47189 * 330.00361 * 16 14 12 20 20 C 1.51276 * 104.19661 * 24.79597 * 5 4 2 21 21 O 1.21293 * 124.94205 * 163.71215 * 20 5 4 22 22 N 1.34420 * 110.11623 * 343.74795 * 20 5 4 23 23 C 1.39928 * 124.35015 * 179.57027 * 22 20 5 24 24 C 1.38869 * 120.06887 * 293.22238 * 23 22 20 25 25 C 1.38122 * 119.92498 * 179.74627 * 24 23 22 26 26 C 1.38278 * 120.06891 * 0.52785 * 25 24 23 27 27 C 1.38286 * 120.14561 * 359.74693 * 26 25 24 28 28 C 1.38112 * 120.06518 * 359.97438 * 27 26 25 29 29 H 1.09004 * 109.47132 * 302.83214 * 1 2 3 30 30 H 1.09003 * 109.47387 * 62.83591 * 1 2 3 31 31 H 1.09003 * 109.46506 * 182.83541 * 1 2 3 32 32 H 1.09001 * 110.97475 * 97.46272 * 4 2 1 33 33 H 1.09003 * 110.96875 * 333.69825 * 4 2 1 34 34 H 0.96995 * 119.99785 * 338.76830 * 7 5 4 35 35 H 0.96689 * 114.00218 * 0.02562 * 9 8 7 36 36 H 1.09007 * 109.46783 * 354.99037 * 11 10 8 37 37 H 1.08998 * 109.47094 * 234.99734 * 11 10 8 38 38 H 0.96999 * 120.00095 * 179.97438 * 15 14 12 39 39 H 1.07997 * 120.03919 * 0.02562 * 24 23 22 40 40 H 1.07998 * 119.96470 * 180.27566 * 25 24 23 41 41 H 1.08006 * 119.92708 * 179.72051 * 26 25 24 42 42 H 1.07996 * 119.96710 * 179.97438 * 27 26 25 43 43 H 1.08002 * 120.03079 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9067 1.0229 0.0000 4 6 2.0646 -0.7684 -1.2289 5 6 3.3288 -1.4462 -0.6514 6 1 4.2109 -0.8328 -0.8357 7 7 3.5042 -2.7811 -1.2290 8 6 4.7403 -3.3793 -1.2127 9 8 5.7946 -2.7366 -0.6645 10 7 4.8962 -4.5645 -1.7261 11 6 6.2146 -5.2030 -1.7083 12 6 6.1656 -6.4326 -0.8385 13 1 5.2446 -6.7105 -0.3477 14 6 7.2966 -7.2028 -0.6693 15 7 8.4183 -6.8641 -1.2667 16 14 7.2361 -8.7266 0.4094 17 1 6.8603 -9.9027 -0.4158 18 1 8.5710 -8.9554 1.0184 19 1 6.2288 -8.5333 1.4832 20 6 3.0524 -1.5436 0.8327 21 8 3.6577 -2.2547 1.6069 22 7 2.0380 -0.7282 1.1686 23 6 1.5310 -0.5916 2.4656 24 6 0.8751 -1.6549 3.0719 25 6 0.3805 -1.5185 4.3543 26 6 0.5282 -0.3212 5.0301 27 6 1.1758 0.7414 4.4270 28 6 1.6777 0.6095 3.1471 29 1 -0.3634 0.5572 0.8635 30 1 -0.3634 0.4692 -0.9143 31 1 -0.3632 -1.0265 0.0508 32 1 2.3236 -0.0826 -2.0355 33 1 1.3435 -1.5122 -1.5678 34 1 2.7473 -3.2423 -1.6228 35 1 5.5814 -1.8628 -0.3098 36 1 6.9509 -4.5050 -1.3097 37 1 6.4947 -5.4865 -2.7228 38 1 9.2141 -7.4058 -1.1474 39 1 0.7559 -2.5890 2.5431 40 1 -0.1257 -2.3465 4.8281 41 1 0.1365 -0.2157 6.0311 42 1 1.2891 1.6753 4.9574 43 1 2.1837 1.4397 2.6768 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331129839.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:34 Heat of formation + Delta-G solvation = -42.041231 kcal Electronic energy + Delta-G solvation = -26249.969392 eV Core-core repulsion = 22487.686284 eV Total energy + Delta-G solvation = -3762.283108 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.32566 -40.38420 -39.46297 -37.99815 -35.97273 -35.83811 -34.18501 -33.06635 -31.92972 -31.15056 -29.87503 -28.51772 -25.62553 -24.76777 -23.83685 -23.61695 -22.34650 -21.86530 -20.77331 -19.99918 -18.57082 -18.49681 -17.84385 -17.59162 -17.14720 -16.61841 -16.22493 -15.97264 -15.57088 -15.49267 -15.04058 -14.91336 -14.67380 -14.55221 -14.38777 -14.36235 -13.99416 -13.69992 -13.58110 -13.50698 -13.05232 -12.88477 -12.70021 -12.55062 -12.38615 -12.21789 -12.09964 -12.00764 -11.95538 -11.69512 -10.85995 -10.75170 -10.35189 -10.15776 -9.95111 -9.46037 -9.00744 -8.19840 -6.35482 0.21885 0.38820 1.19582 1.32535 1.37384 1.48329 1.70822 1.98363 2.08998 2.40062 2.72013 3.01227 3.10916 3.25589 3.32068 3.76812 3.82374 3.94147 3.99738 4.10752 4.21417 4.32015 4.47099 4.53229 4.55420 4.60652 4.76827 4.83730 4.97260 5.01887 5.03950 5.17638 5.29229 5.31980 5.38074 5.38931 5.42610 5.53309 5.61506 5.68166 5.91038 6.05312 6.14447 6.34716 6.71638 6.99418 7.03170 7.26812 7.58492 8.87361 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015732 B = 0.003166 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.439561 B = 8842.878775 C =10001.585153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.128 3.872 3 H 0.120 0.880 4 C -0.111 4.111 5 C 0.115 3.885 6 H 0.139 0.861 7 N -0.705 5.705 8 C 0.545 3.455 9 O -0.515 6.515 10 N -0.622 5.622 11 C 0.221 3.779 12 C -0.533 4.533 13 H 0.045 0.955 14 C 0.000 4.000 15 N -0.931 5.931 16 Si 0.976 3.024 17 H -0.263 1.263 18 H -0.271 1.271 19 H -0.275 1.275 20 C 0.484 3.516 21 O -0.559 6.559 22 N -0.566 5.566 23 C 0.132 3.868 24 C -0.137 4.137 25 C -0.118 4.118 26 C -0.123 4.123 27 C -0.108 4.108 28 C -0.126 4.126 29 H 0.059 0.941 30 H 0.103 0.897 31 H 0.048 0.952 32 H 0.146 0.854 33 H 0.102 0.898 34 H 0.424 0.576 35 H 0.394 0.606 36 H -0.019 1.019 37 H 0.000 1.000 38 H 0.267 0.733 39 H 0.100 0.900 40 H 0.137 0.863 41 H 0.151 0.849 42 H 0.156 0.844 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.700 25.998 6.637 35.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.027 3.973 3 H 0.138 0.862 4 C -0.149 4.149 5 C 0.006 3.994 6 H 0.157 0.843 7 N -0.358 5.358 8 C 0.231 3.769 9 O -0.310 6.310 10 N -0.369 5.369 11 C 0.093 3.907 12 C -0.572 4.572 13 H 0.063 0.937 14 C -0.197 4.197 15 N -0.571 5.571 16 Si 0.799 3.201 17 H -0.188 1.188 18 H -0.196 1.196 19 H -0.199 1.199 20 C 0.270 3.730 21 O -0.435 6.435 22 N -0.296 5.296 23 C 0.042 3.958 24 C -0.157 4.157 25 C -0.137 4.137 26 C -0.141 4.141 27 C -0.127 4.127 28 C -0.145 4.145 29 H 0.078 0.922 30 H 0.122 0.878 31 H 0.067 0.933 32 H 0.164 0.836 33 H 0.120 0.880 34 H 0.264 0.736 35 H 0.250 0.750 36 H -0.001 1.001 37 H 0.018 0.982 38 H 0.076 0.924 39 H 0.118 0.882 40 H 0.155 0.845 41 H 0.168 0.832 42 H 0.174 0.826 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -22.057 24.631 6.617 33.719 hybrid contribution 0.575 -0.589 0.995 1.291 sum -21.482 24.043 7.612 33.128 Atomic orbital electron populations 1.22075 0.92479 1.02490 1.04202 1.22216 0.96376 0.97025 0.81701 0.86206 1.23120 0.93067 1.00703 0.97996 1.21899 1.04173 0.84950 0.88401 0.84337 1.44046 1.07236 1.18322 1.66242 1.20901 0.80552 0.87712 0.87769 1.85333 1.35132 1.35695 1.74801 1.72365 1.26808 1.06001 1.31775 1.18831 0.84704 0.92676 0.94518 1.21483 0.96283 1.10175 1.29223 0.93707 1.26000 0.94556 1.01640 0.97553 1.70091 1.01427 1.40701 1.44926 0.85309 0.77718 0.78588 0.78492 1.18788 1.19603 1.19944 1.22384 0.79544 0.78537 0.92511 1.90827 1.53289 1.41020 1.58404 1.45949 1.33481 1.42946 1.07262 1.17630 0.97884 0.95204 0.85117 1.21336 0.98922 0.98336 0.97121 1.21309 0.99638 0.99077 0.93627 1.21569 0.98867 0.92583 1.01045 1.21438 0.96868 1.00165 0.94201 1.21449 1.00533 0.97058 0.95460 0.92233 0.87803 0.93314 0.83578 0.87950 0.73596 0.75002 1.00073 0.98163 0.92371 0.88155 0.84514 0.83165 0.82616 0.83834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 8.86 71.98 0.64 -0.44 16 2 C 0.13 1.07 3.86 45.45 0.18 1.25 16 3 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 4 C -0.11 -0.84 6.37 31.65 0.20 -0.64 16 5 C 0.12 2.16 2.89 44.98 0.13 2.29 16 6 H 0.14 1.95 6.73 -2.39 -0.02 1.94 16 7 N -0.70 -20.44 5.26 -441.61 -2.32 -22.76 16 8 C 0.55 23.75 8.78 179.63 1.58 25.33 16 9 O -0.52 -22.46 11.99 -83.70 -1.00 -23.46 16 10 N -0.62 -33.92 10.59 -469.73 -4.97 -38.90 16 11 C 0.22 14.29 6.09 85.63 0.52 14.81 16 12 C -0.53 -35.98 9.39 25.60 0.24 -35.74 16 13 H 0.04 3.05 7.81 -2.91 -0.02 3.02 16 14 C 0.00 0.02 5.46 84.65 0.46 0.49 16 15 N -0.93 -61.76 13.29 21.45 0.28 -61.47 16 16 Si 0.98 49.69 29.54 68.60 2.03 51.72 16 17 H -0.26 -12.61 7.11 99.48 0.71 -11.90 16 18 H -0.27 -13.04 7.11 99.48 0.71 -12.33 16 19 H -0.27 -13.87 7.11 99.48 0.71 -13.16 16 20 C 0.48 12.85 7.48 87.90 0.66 13.51 16 21 O -0.56 -22.35 17.69 -3.07 -0.05 -22.40 16 22 N -0.57 -10.62 2.82 -605.49 -1.71 -12.33 16 23 C 0.13 2.72 4.52 38.15 0.17 2.89 16 24 C -0.14 -3.18 9.87 22.39 0.22 -2.96 16 25 C -0.12 -2.17 10.04 22.25 0.22 -1.94 16 26 C -0.12 -1.72 10.04 22.29 0.22 -1.50 16 27 C -0.11 -1.40 10.04 22.25 0.22 -1.18 16 28 C -0.13 -1.96 9.94 22.39 0.22 -1.74 16 29 H 0.06 0.50 7.87 -2.38 -0.02 0.48 16 30 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 31 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.15 0.07 8.14 -2.39 -0.02 0.05 16 33 H 0.10 0.76 7.57 -2.39 -0.02 0.74 16 34 H 0.42 11.23 8.50 -92.71 -0.79 10.44 16 35 H 0.39 12.31 6.44 -74.06 -0.48 11.84 16 36 H -0.02 -1.28 6.74 -2.38 -0.02 -1.30 16 37 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 38 H 0.27 16.35 8.31 -92.71 -0.77 15.58 16 39 H 0.10 2.66 8.06 -2.91 -0.02 2.64 16 40 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 41 H 0.15 1.27 8.06 -2.91 -0.02 1.24 16 42 H 0.16 1.05 8.06 -2.91 -0.02 1.03 16 43 H 0.14 1.59 8.06 -2.91 -0.02 1.56 16 Total: -1.00 -98.16 367.08 -2.08 -100.24 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -0.22 Total: 14.93 kcal Atomic # 6 Polarization: 8.55 SS G_CDS: 5.89 Total: 14.44 kcal Atomic # 7 Polarization: -126.74 SS G_CDS: -8.72 Total: -135.46 kcal Atomic # 8 Polarization: -44.81 SS G_CDS: -1.06 Total: -45.86 kcal Atomic # 14 Polarization: 49.69 SS G_CDS: 2.03 Total: 51.72 kcal Total: -98.16 -2.08 -100.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331129839.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.199 kcal (2) G-P(sol) polarization free energy of solvation -98.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds