Wall clock time and date at job start Tue Mar 31 2020 12:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.49117 * 2 1 4 4 C 1.53092 * 109.48054 * 239.96910 * 2 1 3 5 5 C 1.53179 * 109.16254 * 297.63317 * 4 2 1 6 6 H 1.08997 * 109.54766 * 62.88742 * 5 4 2 7 7 C 1.53002 * 109.54243 * 183.15292 * 5 4 2 8 8 N 1.46494 * 109.47137 * 184.55321 * 7 5 4 9 9 S 1.65603 * 119.99954 * 164.99577 * 8 7 5 10 10 O 1.42102 * 104.27634 * 181.06876 * 9 8 7 11 11 O 1.42098 * 104.28107 * 308.93030 * 9 8 7 12 12 C 1.81402 * 104.44637 * 65.00312 * 9 8 7 13 13 C 1.53011 * 109.47017 * 173.86255 * 12 9 8 14 14 C 1.50697 * 115.54730 * 39.91724 * 13 12 9 15 15 H 1.07998 * 120.00404 * 264.79028 * 14 13 12 16 16 C 1.37879 * 119.99752 * 84.79801 * 14 13 12 17 17 N 1.31511 * 120.00371 * 353.00531 * 16 14 13 18 18 Si 1.86806 * 119.99813 * 173.00201 * 16 14 13 19 19 H 1.48495 * 109.47151 * 90.00093 * 18 16 14 20 20 H 1.48497 * 109.46992 * 209.99826 * 18 16 14 21 21 H 1.48502 * 109.46889 * 329.99945 * 18 16 14 22 22 C 1.52999 * 117.49502 * 254.20966 * 13 12 9 23 23 C 1.53000 * 117.49732 * 185.58740 * 13 12 9 24 24 C 1.53178 * 109.03544 * 303.01408 * 5 4 2 25 25 C 1.53090 * 109.16060 * 56.98383 * 24 5 4 26 26 O 1.42904 * 109.41663 * 302.38907 * 25 24 5 27 27 H 1.09001 * 109.47128 * 299.97249 * 1 2 3 28 28 H 1.09004 * 109.46836 * 59.96878 * 1 2 3 29 29 H 1.08992 * 109.47830 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.52170 * 177.72601 * 4 2 1 31 31 H 1.09007 * 109.57368 * 57.56520 * 4 2 1 32 32 H 1.09007 * 109.47049 * 304.55309 * 7 5 4 33 33 H 1.08998 * 109.47466 * 64.54873 * 7 5 4 34 34 H 0.96997 * 120.00700 * 344.99878 * 8 7 5 35 35 H 1.09002 * 109.46862 * 293.85634 * 12 9 8 36 36 H 1.09000 * 109.47715 * 53.86394 * 12 9 8 37 37 H 0.96996 * 120.00303 * 185.03719 * 17 16 14 38 38 H 1.09003 * 117.50389 * 0.02562 * 22 13 12 39 39 H 1.09005 * 117.49688 * 145.02206 * 22 13 12 40 40 H 1.08990 * 117.49953 * 214.97476 * 23 13 12 41 41 H 1.08998 * 117.50034 * 359.97438 * 23 13 12 42 42 H 1.08999 * 109.52329 * 297.07706 * 24 5 4 43 43 H 1.09001 * 109.57302 * 176.91871 * 24 5 4 44 44 H 1.08998 * 109.47973 * 182.40610 * 25 24 5 45 45 H 1.09001 * 109.48131 * 62.37096 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0405 -0.7223 -1.2495 5 6 1.5756 -2.1813 -1.2121 6 1 0.4866 -2.2179 -1.2409 7 6 2.1466 -2.9315 -2.4172 8 7 1.6143 -4.2962 -2.4399 9 16 1.7538 -5.2167 -3.8094 10 8 1.1161 -6.4416 -3.4748 11 8 1.2463 -4.3851 -4.8439 12 6 3.5399 -5.4628 -4.0092 13 6 3.7949 -6.4334 -5.1643 14 6 2.9058 -6.2586 -6.3684 15 1 2.0132 -6.8576 -6.4721 16 6 3.2320 -5.3340 -7.3377 17 7 4.2394 -4.5100 -7.1482 18 14 2.2431 -5.2516 -8.9204 19 1 1.1127 -4.3041 -8.7491 20 1 3.1171 -4.7846 -10.0264 21 1 1.7136 -6.6008 -9.2439 22 6 4.2314 -7.8559 -4.8082 23 6 5.2391 -6.8746 -5.4104 24 6 2.0763 -2.8323 0.0809 25 6 1.5644 -2.0285 1.2790 26 8 2.0065 -0.6743 1.1664 27 1 -0.3633 0.5134 0.8902 28 1 -0.3633 0.5143 -0.8897 29 1 -0.3634 -1.0275 -0.0005 30 1 3.1297 -0.6876 -1.2708 31 1 1.6430 -0.2361 -2.1405 32 1 1.8626 -2.4154 -3.3344 33 1 3.2334 -2.9667 -2.3417 34 1 1.1800 -4.6606 -1.6528 35 1 4.0164 -4.5068 -4.2261 36 1 3.9550 -5.8754 -3.0896 37 1 4.4236 -3.8121 -7.7961 38 1 4.3366 -8.1006 -3.7512 39 1 3.8754 -8.6659 -5.4450 40 1 5.5460 -7.0389 -6.4433 41 1 6.0076 -6.4732 -4.7499 42 1 3.1662 -2.8402 0.0864 43 1 1.7043 -3.8550 0.1426 44 1 1.9528 -2.4623 2.2004 45 1 0.4748 -2.0549 1.2957 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331832414.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:51 Heat of formation + Delta-G solvation = -111.377424 kcal Electronic energy + Delta-G solvation = -25935.198728 eV Core-core repulsion = 22273.060177 eV Total energy + Delta-G solvation = -3662.138551 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.08471 -36.72101 -36.30058 -35.94697 -34.87626 -32.94795 -32.08225 -32.00055 -28.69669 -28.16908 -25.86664 -25.43015 -23.71829 -22.06213 -21.20100 -19.74759 -19.39592 -18.56167 -17.06881 -16.61313 -16.28466 -16.17033 -15.86290 -15.06417 -14.83245 -14.73616 -14.64271 -14.22741 -13.90217 -13.58723 -13.48479 -13.07905 -12.99468 -12.42561 -12.28440 -12.16219 -11.96970 -11.78880 -11.46319 -11.29509 -11.12672 -11.03457 -10.98779 -10.97427 -10.84571 -10.71389 -10.51453 -10.34290 -10.21435 -10.10288 -9.71828 -9.62896 -9.17028 -8.89236 -8.53127 -8.10601 -6.15686 -4.30084 1.21682 3.33239 3.40456 3.43303 3.61157 3.67372 4.40283 4.49014 4.51770 4.54245 4.73263 4.75259 4.88134 5.05683 5.10309 5.14819 5.16316 5.23403 5.25817 5.33120 5.39474 5.48543 5.56411 5.67337 5.69643 5.76421 5.81005 5.89385 5.94168 5.97670 6.00932 6.18121 6.27827 6.34412 6.36706 6.62281 6.70292 6.95788 7.03059 7.18043 7.33789 7.39493 7.79025 8.19270 8.78522 9.47008 10.91954 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019008 B = 0.003780 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.699267 B = 7405.307594 C = 7921.401180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.087 3.913 3 H 0.102 0.898 4 C -0.146 4.146 5 C -0.097 4.097 6 H 0.082 0.918 7 C 0.123 3.877 8 N -1.138 6.138 9 S 2.624 3.376 10 O -0.978 6.978 11 O -0.942 6.942 12 C -0.560 4.560 13 C 0.051 3.949 14 C -0.543 4.543 15 H 0.069 0.931 16 C 0.098 3.902 17 N -0.867 5.867 18 Si 0.889 3.111 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.270 1.270 22 C -0.205 4.205 23 C -0.144 4.144 24 C -0.153 4.153 25 C 0.057 3.943 26 O -0.379 6.379 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.406 0.594 35 H 0.126 0.874 36 H 0.096 0.904 37 H 0.265 0.735 38 H 0.069 0.931 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.065 0.935 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.092 0.908 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.904 7.862 15.117 17.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.030 3.970 3 H 0.120 0.880 4 C -0.185 4.185 5 C -0.116 4.116 6 H 0.100 0.900 7 C -0.004 4.004 8 N -0.894 5.894 9 S 2.721 3.279 10 O -0.968 6.968 11 O -0.932 6.932 12 C -0.692 4.692 13 C 0.049 3.951 14 C -0.580 4.580 15 H 0.087 0.913 16 C -0.109 4.109 17 N -0.501 5.501 18 Si 0.716 3.284 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.194 1.194 22 C -0.242 4.242 23 C -0.183 4.183 24 C -0.191 4.191 25 C -0.020 4.020 26 O -0.298 6.298 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.239 0.761 35 H 0.144 0.856 36 H 0.114 0.886 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.083 0.917 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.110 0.890 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.292 7.868 14.452 16.781 hybrid contribution -0.001 -0.033 -0.477 0.478 sum -3.294 7.835 13.975 16.356 Atomic orbital electron populations 1.22478 0.96465 1.02943 1.02692 1.22161 0.93434 0.96343 0.85096 0.88033 1.22226 1.02344 0.95188 0.98706 1.21428 1.01183 0.94646 0.94389 0.89980 1.21258 0.97789 0.82201 0.99150 1.56131 1.74893 1.24695 1.33716 1.04595 0.78203 0.73099 0.72007 1.93482 1.74207 1.45731 1.83406 1.93526 1.77267 1.67508 1.54892 1.29974 1.23942 1.09855 1.05465 1.18173 0.96222 0.88551 0.92203 1.20586 1.09390 1.23733 1.04304 0.91325 1.24884 0.93751 0.94257 0.98003 1.69947 1.27717 1.16264 1.36210 0.86605 0.80407 0.79078 0.82323 1.19606 1.20997 1.19426 1.23125 1.07188 0.94994 0.98873 1.22525 0.92792 1.02942 1.00071 1.22279 1.02392 0.99773 0.94645 1.22584 0.98774 0.82311 0.98294 1.87978 1.73767 1.24795 1.43270 0.92018 0.91292 0.91712 0.90490 0.90223 0.89960 0.91951 0.76149 0.85563 0.88565 0.92571 0.91276 0.89703 0.89653 0.91652 0.90592 0.90650 0.89020 0.92903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.49 8.65 37.16 0.32 -1.17 16 2 C 0.09 0.77 3.91 -26.68 -0.10 0.67 16 3 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 4 C -0.15 -1.37 4.93 -26.59 -0.13 -1.50 16 5 C -0.10 -1.00 2.08 -90.43 -0.19 -1.19 16 6 H 0.08 0.84 6.62 -51.93 -0.34 0.49 16 7 C 0.12 1.61 5.53 -4.04 -0.02 1.59 16 8 N -1.14 -16.96 5.77 -10.61 -0.06 -17.02 16 9 S 2.62 54.64 4.63 -107.50 -0.50 54.14 16 10 O -0.98 -22.54 18.08 -57.54 -1.04 -23.58 16 11 O -0.94 -23.21 16.63 -57.54 -0.96 -24.17 16 12 C -0.56 -11.67 6.18 37.16 0.23 -11.44 16 13 C 0.05 1.23 1.64 -155.66 -0.26 0.98 16 14 C -0.54 -14.92 6.89 -34.44 -0.24 -15.16 16 15 H 0.07 1.94 7.82 -52.49 -0.41 1.53 16 16 C 0.10 2.70 5.39 -17.82 -0.10 2.61 16 17 N -0.87 -23.91 12.96 55.43 0.72 -23.19 16 18 Si 0.89 21.78 29.55 -169.99 -5.02 16.76 16 19 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 22 C -0.20 -4.46 9.88 -26.73 -0.26 -4.73 16 23 C -0.14 -3.29 9.50 -26.73 -0.25 -3.55 16 24 C -0.15 -1.42 5.25 -26.59 -0.14 -1.56 16 25 C 0.06 0.50 6.52 37.20 0.24 0.74 16 26 O -0.38 -3.97 10.60 -35.23 -0.37 -4.34 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.53 4.97 -51.93 -0.26 0.27 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.08 1.19 7.69 -51.93 -0.40 0.79 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.41 5.09 7.42 -34.46 -0.26 4.84 16 35 H 0.13 2.64 8.14 -51.92 -0.42 2.22 16 36 H 0.10 1.67 7.95 -51.92 -0.41 1.26 16 37 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 38 H 0.07 1.33 8.08 -51.93 -0.42 0.91 16 39 H 0.08 1.83 8.14 -51.93 -0.42 1.41 16 40 H 0.08 2.05 8.14 -51.93 -0.42 1.63 16 41 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 42 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.07 0.65 7.00 -51.93 -0.36 0.28 16 44 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.05 0.43 6.34 -51.93 -0.33 0.10 16 LS Contribution 365.79 15.07 5.51 5.51 Total: -1.00 -33.05 365.79 -10.02 -43.07 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -7.40 Total: 6.54 kcal Atomic # 6 Polarization: -32.81 SS G_CDS: -0.90 Total: -33.71 kcal Atomic # 7 Polarization: -40.87 SS G_CDS: 0.66 Total: -40.21 kcal Atomic # 8 Polarization: -49.72 SS G_CDS: -2.37 Total: -52.09 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: 54.64 SS G_CDS: -0.50 Total: 54.14 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.05 -10.02 -43.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331832414.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.308 kcal (2) G-P(sol) polarization free energy of solvation -33.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds