Wall clock time and date at job start Tue Mar 31 2020 12:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.49117 * 2 1 4 4 C 1.53092 * 109.48054 * 239.96910 * 2 1 3 5 5 C 1.53179 * 109.16254 * 297.63317 * 4 2 1 6 6 H 1.08997 * 109.54766 * 62.88742 * 5 4 2 7 7 C 1.53002 * 109.54243 * 183.15292 * 5 4 2 8 8 N 1.46494 * 109.47137 * 184.55321 * 7 5 4 9 9 S 1.65603 * 119.99954 * 164.99577 * 8 7 5 10 10 O 1.42102 * 104.27634 * 181.06876 * 9 8 7 11 11 O 1.42098 * 104.28107 * 308.93030 * 9 8 7 12 12 C 1.81402 * 104.44637 * 65.00312 * 9 8 7 13 13 C 1.53011 * 109.47017 * 173.86255 * 12 9 8 14 14 C 1.50697 * 115.54730 * 39.91724 * 13 12 9 15 15 H 1.07998 * 120.00404 * 264.79028 * 14 13 12 16 16 C 1.37879 * 119.99752 * 84.79801 * 14 13 12 17 17 N 1.31511 * 120.00371 * 353.00531 * 16 14 13 18 18 Si 1.86806 * 119.99813 * 173.00201 * 16 14 13 19 19 H 1.48495 * 109.47151 * 90.00093 * 18 16 14 20 20 H 1.48497 * 109.46992 * 209.99826 * 18 16 14 21 21 H 1.48502 * 109.46889 * 329.99945 * 18 16 14 22 22 C 1.52999 * 117.49502 * 254.20966 * 13 12 9 23 23 C 1.53000 * 117.49732 * 185.58740 * 13 12 9 24 24 C 1.53178 * 109.03544 * 303.01408 * 5 4 2 25 25 C 1.53090 * 109.16060 * 56.98383 * 24 5 4 26 26 O 1.42904 * 109.41663 * 302.38907 * 25 24 5 27 27 H 1.09001 * 109.47128 * 299.97249 * 1 2 3 28 28 H 1.09004 * 109.46836 * 59.96878 * 1 2 3 29 29 H 1.08992 * 109.47830 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.52170 * 177.72601 * 4 2 1 31 31 H 1.09007 * 109.57368 * 57.56520 * 4 2 1 32 32 H 1.09007 * 109.47049 * 304.55309 * 7 5 4 33 33 H 1.08998 * 109.47466 * 64.54873 * 7 5 4 34 34 H 0.96997 * 120.00700 * 344.99878 * 8 7 5 35 35 H 1.09002 * 109.46862 * 293.85634 * 12 9 8 36 36 H 1.09000 * 109.47715 * 53.86394 * 12 9 8 37 37 H 0.96996 * 120.00303 * 185.03719 * 17 16 14 38 38 H 1.09003 * 117.50389 * 0.02562 * 22 13 12 39 39 H 1.09005 * 117.49688 * 145.02206 * 22 13 12 40 40 H 1.08990 * 117.49953 * 214.97476 * 23 13 12 41 41 H 1.08998 * 117.50034 * 359.97438 * 23 13 12 42 42 H 1.08999 * 109.52329 * 297.07706 * 24 5 4 43 43 H 1.09001 * 109.57302 * 176.91871 * 24 5 4 44 44 H 1.08998 * 109.47973 * 182.40610 * 25 24 5 45 45 H 1.09001 * 109.48131 * 62.37096 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0405 -0.7223 -1.2495 5 6 1.5756 -2.1813 -1.2121 6 1 0.4866 -2.2179 -1.2409 7 6 2.1466 -2.9315 -2.4172 8 7 1.6143 -4.2962 -2.4399 9 16 1.7538 -5.2167 -3.8094 10 8 1.1161 -6.4416 -3.4748 11 8 1.2463 -4.3851 -4.8439 12 6 3.5399 -5.4628 -4.0092 13 6 3.7949 -6.4334 -5.1643 14 6 2.9058 -6.2586 -6.3684 15 1 2.0132 -6.8576 -6.4721 16 6 3.2320 -5.3340 -7.3377 17 7 4.2394 -4.5100 -7.1482 18 14 2.2431 -5.2516 -8.9204 19 1 1.1127 -4.3041 -8.7491 20 1 3.1171 -4.7846 -10.0264 21 1 1.7136 -6.6008 -9.2439 22 6 4.2314 -7.8559 -4.8082 23 6 5.2391 -6.8746 -5.4104 24 6 2.0763 -2.8323 0.0809 25 6 1.5644 -2.0285 1.2790 26 8 2.0065 -0.6743 1.1664 27 1 -0.3633 0.5134 0.8902 28 1 -0.3633 0.5143 -0.8897 29 1 -0.3634 -1.0275 -0.0005 30 1 3.1297 -0.6876 -1.2708 31 1 1.6430 -0.2361 -2.1405 32 1 1.8626 -2.4154 -3.3344 33 1 3.2334 -2.9667 -2.3417 34 1 1.1800 -4.6606 -1.6528 35 1 4.0164 -4.5068 -4.2261 36 1 3.9550 -5.8754 -3.0896 37 1 4.4236 -3.8121 -7.7961 38 1 4.3366 -8.1006 -3.7512 39 1 3.8754 -8.6659 -5.4450 40 1 5.5460 -7.0389 -6.4433 41 1 6.0076 -6.4732 -4.7499 42 1 3.1662 -2.8402 0.0864 43 1 1.7043 -3.8550 0.1426 44 1 1.9528 -2.4623 2.2004 45 1 0.4748 -2.0549 1.2957 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331832414.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:50 Heat of formation + Delta-G solvation = -134.521471 kcal Electronic energy + Delta-G solvation = -25936.202329 eV Core-core repulsion = 22273.060177 eV Total energy + Delta-G solvation = -3663.142152 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.82487 -38.52907 -37.87516 -37.15294 -36.63081 -34.10530 -33.83158 -32.82826 -29.86224 -29.44514 -27.50883 -26.74136 -24.44276 -22.96203 -22.92273 -21.50159 -20.30374 -20.05065 -18.51543 -18.29272 -17.43427 -17.13693 -16.83015 -16.82399 -16.55686 -16.02540 -15.60399 -15.45615 -15.33701 -14.87098 -14.66454 -14.34139 -13.92265 -13.83386 -13.73215 -13.32966 -13.07788 -13.01211 -12.91808 -12.81539 -12.76133 -12.65342 -12.51949 -12.41774 -12.09963 -12.07608 -11.92012 -11.88064 -11.57425 -11.48951 -10.92620 -10.86571 -10.53810 -10.41705 -10.34153 -9.88378 -8.22844 -6.40050 -0.40997 1.35534 1.41362 1.46142 2.17768 2.39587 2.99726 3.05215 3.08712 3.35228 3.55430 3.71660 3.78292 3.79846 3.98749 4.07594 4.21225 4.33905 4.38617 4.44352 4.47849 4.50062 4.60110 4.60581 4.65260 4.71445 4.79893 4.85522 4.87152 4.98671 5.01952 5.02545 5.07729 5.19783 5.20500 5.24229 5.30536 5.40966 5.49445 5.61252 5.69008 6.20385 6.21789 6.35577 6.68961 7.37626 8.84182 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019008 B = 0.003780 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.699267 B = 7405.307594 C = 7921.401180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.086 3.914 3 H 0.111 0.889 4 C -0.146 4.146 5 C -0.092 4.092 6 H 0.084 0.916 7 C 0.115 3.885 8 N -1.118 6.118 9 S 2.635 3.365 10 O -1.005 7.005 11 O -0.989 6.989 12 C -0.554 4.554 13 C 0.014 3.986 14 C -0.558 4.558 15 H 0.047 0.953 16 C 0.061 3.939 17 N -0.883 5.883 18 Si 0.924 3.076 19 H -0.279 1.279 20 H -0.269 1.269 21 H -0.267 1.267 22 C -0.191 4.191 23 C -0.142 4.142 24 C -0.152 4.152 25 C 0.055 3.945 26 O -0.396 6.396 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.420 0.580 35 H 0.123 0.877 36 H 0.135 0.865 37 H 0.267 0.733 38 H 0.101 0.899 39 H 0.079 0.921 40 H 0.063 0.937 41 H 0.087 0.913 42 H 0.073 0.927 43 H 0.084 0.916 44 H 0.104 0.896 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.515 8.150 16.850 18.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.029 3.971 3 H 0.129 0.871 4 C -0.184 4.184 5 C -0.111 4.111 6 H 0.102 0.898 7 C -0.011 4.011 8 N -0.879 5.879 9 S 2.732 3.268 10 O -0.995 6.995 11 O -0.978 6.978 12 C -0.687 4.687 13 C 0.012 3.988 14 C -0.595 4.595 15 H 0.065 0.935 16 C -0.144 4.144 17 N -0.518 5.518 18 Si 0.749 3.251 19 H -0.205 1.205 20 H -0.194 1.194 21 H -0.191 1.191 22 C -0.228 4.228 23 C -0.180 4.180 24 C -0.190 4.190 25 C -0.022 4.022 26 O -0.315 6.315 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.256 0.744 35 H 0.142 0.858 36 H 0.153 0.847 37 H 0.076 0.924 38 H 0.120 0.880 39 H 0.098 0.902 40 H 0.082 0.918 41 H 0.105 0.895 42 H 0.092 0.908 43 H 0.102 0.898 44 H 0.122 0.878 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.910 8.139 16.182 18.346 hybrid contribution -0.125 -0.120 -0.962 0.978 sum -3.035 8.019 15.220 17.468 Atomic orbital electron populations 1.22461 0.95797 1.02915 1.03208 1.22248 0.93985 0.96611 0.84304 0.87077 1.22233 1.02296 0.94600 0.99304 1.21394 1.01205 0.94942 0.93605 0.89775 1.21481 0.98726 0.81027 0.99853 1.55539 1.74884 1.24893 1.32560 1.03930 0.78099 0.72488 0.72260 1.93434 1.74980 1.47225 1.83902 1.93468 1.78340 1.68458 1.57578 1.29844 1.23798 1.09135 1.05939 1.18334 0.96727 0.91091 0.92684 1.20733 1.09327 1.23389 1.06064 0.93472 1.25400 0.94686 0.94344 0.99991 1.69973 1.28370 1.16590 1.36864 0.86064 0.79475 0.78924 0.80586 1.20527 1.19356 1.19093 1.23210 1.05360 0.93606 1.00601 1.22468 0.92685 1.03349 0.99542 1.22287 1.02293 1.00247 0.94170 1.22691 0.99319 0.81629 0.98519 1.87959 1.74192 1.25569 1.43806 0.91603 0.90711 0.91986 0.90649 0.89936 0.91673 0.90644 0.74412 0.85847 0.84675 0.92400 0.88042 0.90243 0.91796 0.89503 0.90792 0.89776 0.87783 0.92160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.62 8.65 71.98 0.62 -1.99 16 2 C 0.09 1.37 3.91 30.63 0.12 1.49 16 3 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 4 C -0.15 -2.51 4.93 30.68 0.15 -2.35 16 5 C -0.09 -1.73 2.08 -10.67 -0.02 -1.75 16 6 H 0.08 1.57 6.62 -2.39 -0.02 1.55 16 7 C 0.12 2.87 5.53 86.38 0.48 3.34 16 8 N -1.12 -31.67 5.77 -187.49 -1.08 -32.75 16 9 S 2.63 108.35 4.63 -56.49 -0.26 108.09 16 10 O -1.00 -45.82 18.08 -127.65 -2.31 -48.13 16 11 O -0.99 -49.50 16.63 -127.65 -2.12 -51.63 16 12 C -0.55 -22.22 6.18 71.99 0.45 -21.78 16 13 C 0.01 0.65 1.64 -52.93 -0.09 0.56 16 14 C -0.56 -30.97 6.89 25.60 0.18 -30.80 16 15 H 0.05 2.74 7.82 -2.91 -0.02 2.72 16 16 C 0.06 3.38 5.39 84.66 0.46 3.83 16 17 N -0.88 -48.81 12.96 21.45 0.28 -48.53 16 18 Si 0.92 44.81 29.55 68.60 2.03 46.84 16 19 H -0.28 -13.85 7.11 99.48 0.71 -13.14 16 20 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 21 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 22 C -0.19 -7.95 9.88 30.59 0.30 -7.65 16 23 C -0.14 -6.26 9.50 30.60 0.29 -5.97 16 24 C -0.15 -2.47 5.25 30.68 0.16 -2.31 16 25 C 0.05 0.83 6.52 72.01 0.47 1.30 16 26 O -0.40 -7.49 10.60 -148.98 -1.58 -9.07 16 27 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.06 0.90 4.97 -2.39 -0.01 0.89 16 30 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 32 H 0.06 1.87 7.69 -2.38 -0.02 1.85 16 33 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.42 9.67 7.42 -96.75 -0.72 8.95 16 35 H 0.12 5.02 8.14 -2.39 -0.02 5.00 16 36 H 0.14 4.24 7.95 -2.39 -0.02 4.22 16 37 H 0.27 14.04 8.32 -92.71 -0.77 13.27 16 38 H 0.10 3.54 8.08 -2.39 -0.02 3.52 16 39 H 0.08 3.35 8.14 -2.38 -0.02 3.33 16 40 H 0.06 3.06 8.14 -2.39 -0.02 3.04 16 41 H 0.09 3.41 8.14 -2.39 -0.02 3.39 16 42 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.08 1.21 7.00 -2.39 -0.02 1.19 16 44 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.06 0.83 6.34 -2.39 -0.02 0.81 16 Total: -1.00 -70.76 365.79 -1.23 -71.99 By element: Atomic # 1 Polarization: 27.00 SS G_CDS: 0.26 Total: 27.26 kcal Atomic # 6 Polarization: -67.64 SS G_CDS: 3.56 Total: -64.07 kcal Atomic # 7 Polarization: -80.48 SS G_CDS: -0.80 Total: -81.28 kcal Atomic # 8 Polarization: -102.81 SS G_CDS: -6.01 Total: -108.82 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Atomic # 16 Polarization: 108.35 SS G_CDS: -0.26 Total: 108.09 kcal Total: -70.76 -1.23 -71.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331832414.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.534 kcal (2) G-P(sol) polarization free energy of solvation -70.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds