Wall clock time and date at job start Tue Mar 31 2020 12:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.48272 * 2 1 4 4 C 1.53098 * 109.47954 * 120.02399 * 2 1 3 5 5 C 1.53175 * 109.16351 * 62.38744 * 4 2 1 6 6 H 1.09006 * 109.54125 * 297.02334 * 5 4 2 7 7 C 1.52997 * 109.54100 * 176.85067 * 5 4 2 8 8 N 1.46504 * 109.47243 * 175.17500 * 7 5 4 9 9 S 1.65590 * 120.00410 * 164.99633 * 8 7 5 10 10 O 1.42105 * 104.27889 * 308.92926 * 9 8 7 11 11 O 1.42098 * 104.28280 * 181.07098 * 9 8 7 12 12 C 1.81406 * 104.44821 * 65.00028 * 9 8 7 13 13 C 1.53000 * 109.46869 * 186.02687 * 12 9 8 14 14 C 1.50694 * 115.55368 * 299.71820 * 13 12 9 15 15 H 1.07995 * 120.00217 * 95.16836 * 14 13 12 16 16 C 1.37882 * 119.99985 * 275.16698 * 14 13 12 17 17 N 1.31516 * 119.99790 * 7.14115 * 16 14 13 18 18 Si 1.86798 * 120.00109 * 187.13538 * 16 14 13 19 19 H 1.48500 * 109.47324 * 180.02562 * 18 16 14 20 20 H 1.48501 * 109.47231 * 60.00127 * 18 16 14 21 21 H 1.48502 * 109.47165 * 300.00313 * 18 16 14 22 22 C 1.53002 * 117.49815 * 85.39084 * 13 12 9 23 23 C 1.53002 * 117.49585 * 154.04722 * 13 12 9 24 24 C 1.53174 * 109.11196 * 56.93505 * 5 4 2 25 25 C 1.53099 * 109.15631 * 303.15259 * 24 5 4 26 26 O 1.42905 * 109.49058 * 57.47551 * 25 24 5 27 27 H 1.08996 * 109.47040 * 299.98204 * 1 2 3 28 28 H 1.08999 * 109.47057 * 59.97816 * 1 2 3 29 29 H 1.09004 * 109.47011 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.51667 * 302.47405 * 4 2 1 31 31 H 1.09003 * 109.57029 * 182.32603 * 4 2 1 32 32 H 1.08997 * 109.47499 * 55.17278 * 7 5 4 33 33 H 1.09002 * 109.47008 * 295.17413 * 7 5 4 34 34 H 0.97001 * 119.99269 * 345.00094 * 8 7 5 35 35 H 1.08998 * 109.46895 * 66.02726 * 12 9 8 36 36 H 1.08997 * 109.47280 * 306.02370 * 12 9 8 37 37 H 0.96997 * 120.00261 * 355.42691 * 17 16 14 38 38 H 1.09003 * 117.49947 * 214.99639 * 22 13 12 39 39 H 1.09001 * 117.49792 * 0.02562 * 22 13 12 40 40 H 1.09000 * 117.50270 * 359.97438 * 23 13 12 41 41 H 1.09000 * 117.49756 * 144.99674 * 23 13 12 42 42 H 1.09002 * 109.51760 * 62.97038 * 24 5 4 43 43 H 1.09000 * 109.51877 * 183.16071 * 24 5 4 44 44 H 1.08996 * 109.41049 * 297.49219 * 25 24 5 45 45 H 1.09004 * 109.49107 * 177.50447 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7222 1.2497 5 6 1.5760 -2.1813 1.2122 6 1 0.4869 -2.2181 1.2424 7 6 2.1469 -2.9313 2.4174 8 7 1.6100 -4.2941 2.4437 9 16 2.3193 -5.4452 3.3996 10 8 3.6986 -5.3780 3.0643 11 8 1.5618 -6.6217 3.1522 12 6 2.0467 -4.8573 5.0940 13 6 2.7910 -5.7655 6.0748 14 6 2.3760 -7.2141 6.0624 15 1 2.9251 -7.9281 5.4665 16 6 1.2952 -7.6281 6.8118 17 7 0.5419 -6.7414 7.4249 18 14 0.9008 -9.4482 6.9561 19 1 -0.3006 -9.6283 7.8100 20 1 2.0536 -10.1576 7.5669 21 1 0.6357 -10.0059 5.6055 22 6 4.2645 -5.4551 6.3461 23 6 3.2105 -5.1623 7.4169 24 6 2.0751 -2.8335 -0.0807 25 6 1.5650 -2.0286 -1.2789 26 8 2.0068 -0.6742 -1.1663 27 1 -0.3633 0.5135 0.8901 28 1 -0.3633 0.5142 -0.8898 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6419 -0.2356 2.1398 31 1 3.1297 -0.6871 1.2723 32 1 1.8668 -2.4126 3.3342 33 1 3.2335 -2.9703 2.3396 34 1 0.8389 -4.5221 1.9011 35 1 0.9802 -4.8770 5.3182 36 1 2.4193 -3.8374 5.1890 37 1 0.7842 -5.8024 7.4050 38 1 4.9336 -6.2987 6.5156 39 1 4.7034 -4.6036 5.8262 40 1 2.9566 -4.1184 7.6009 41 1 3.1862 -5.8133 8.2908 42 1 3.1651 -2.8425 -0.0869 43 1 1.7011 -3.8556 -0.1410 44 1 0.4755 -2.0552 -1.2958 45 1 1.9536 -2.4622 -2.2004 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331832415.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:54 Heat of formation + Delta-G solvation = -116.511178 kcal Electronic energy + Delta-G solvation = -25817.405440 eV Core-core repulsion = 22155.044273 eV Total energy + Delta-G solvation = -3662.361167 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.14860 -37.09608 -36.48799 -36.08967 -35.14312 -33.05034 -32.13186 -31.99721 -28.76827 -28.33465 -25.96816 -24.98448 -23.74044 -22.19926 -21.42568 -20.03783 -19.56381 -18.71866 -17.20369 -16.89182 -16.52641 -16.29443 -15.91832 -15.43291 -15.16005 -14.78985 -14.46986 -14.03028 -13.81242 -13.73290 -13.63337 -13.23795 -12.91389 -12.69871 -12.57619 -12.38159 -12.02067 -11.89556 -11.52334 -11.39791 -11.31978 -11.27727 -11.18058 -11.07320 -10.84035 -10.78181 -10.65116 -10.37906 -10.28858 -10.09132 -9.75714 -9.70155 -9.28343 -8.68417 -8.50492 -8.34178 -6.47824 -4.26617 0.98497 3.37189 3.44267 3.48725 3.60807 3.65266 4.35279 4.42100 4.46326 4.47560 4.53432 4.68331 4.80178 4.86651 4.99377 5.04217 5.10131 5.14982 5.16553 5.18788 5.29887 5.39219 5.44937 5.54041 5.56066 5.66210 5.70031 5.70950 5.81145 5.85755 5.91650 6.00990 6.07071 6.14847 6.20356 6.32451 6.51403 6.73053 6.98166 6.99427 7.15223 7.18618 8.01506 8.31634 8.74882 9.52664 10.92162 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023773 B = 0.003367 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.522974 B = 8315.183722 C = 8555.893916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.087 3.913 3 H 0.102 0.898 4 C -0.146 4.146 5 C -0.096 4.096 6 H 0.081 0.919 7 C 0.121 3.879 8 N -1.133 6.133 9 S 2.618 3.382 10 O -0.971 6.971 11 O -0.946 6.946 12 C -0.568 4.568 13 C 0.022 3.978 14 C -0.593 4.593 15 H 0.062 0.938 16 C 0.040 3.960 17 N -0.897 5.897 18 Si 1.063 2.937 19 H -0.281 1.281 20 H -0.285 1.285 21 H -0.280 1.280 22 C -0.190 4.190 23 C -0.165 4.165 24 C -0.153 4.153 25 C 0.057 3.943 26 O -0.378 6.378 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.411 0.589 35 H 0.126 0.874 36 H 0.098 0.902 37 H 0.274 0.726 38 H 0.089 0.911 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.089 0.911 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.053 0.947 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.366 14.061 -12.527 18.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.029 3.971 3 H 0.120 0.880 4 C -0.184 4.184 5 C -0.115 4.115 6 H 0.099 0.901 7 C -0.006 4.006 8 N -0.890 5.890 9 S 2.714 3.286 10 O -0.961 6.961 11 O -0.936 6.936 12 C -0.700 4.700 13 C 0.019 3.981 14 C -0.630 4.630 15 H 0.080 0.920 16 C -0.167 4.167 17 N -0.530 5.530 18 Si 0.890 3.110 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.206 1.206 22 C -0.227 4.227 23 C -0.204 4.204 24 C -0.191 4.191 25 C -0.020 4.020 26 O -0.297 6.297 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.244 0.756 35 H 0.144 0.856 36 H 0.117 0.883 37 H 0.086 0.914 38 H 0.107 0.893 39 H 0.093 0.907 40 H 0.088 0.912 41 H 0.107 0.893 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.071 0.929 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.753 12.354 -12.258 17.420 hybrid contribution 0.263 1.494 -0.068 1.519 sum -0.490 13.848 -12.327 18.546 Atomic orbital electron populations 1.22476 0.96434 1.02937 1.02707 1.22150 0.93439 0.96340 0.85126 0.88044 1.22225 1.02377 0.95110 0.98714 1.21416 1.00953 0.94549 0.94610 0.90060 1.21284 0.99158 0.82134 0.98008 1.56007 1.47076 1.23760 1.62137 1.04784 0.74077 0.73246 0.76494 1.93496 1.33674 1.86336 1.82593 1.93563 1.71785 1.44105 1.84128 1.30106 1.10547 1.07619 1.21739 1.18547 0.91588 0.94413 0.93507 1.21388 1.18407 0.90215 1.33004 0.91997 1.25821 0.91948 1.06482 0.92436 1.70773 1.36254 1.04019 1.41971 0.83640 0.76403 0.73983 0.76999 1.20637 1.21138 1.20639 1.23046 0.93111 1.02092 1.04487 1.22792 1.04271 0.99134 0.94195 1.22266 1.02591 0.99945 0.94262 1.22605 0.98750 0.82169 0.98457 1.87986 1.73762 1.24855 1.43138 0.91379 0.91933 0.91703 0.90433 0.90475 0.92023 0.90269 0.75619 0.85602 0.88327 0.91444 0.89261 0.90655 0.91232 0.89291 0.90525 0.90382 0.92900 0.88900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.33 8.65 37.16 0.32 -1.01 16 2 C 0.09 0.71 3.91 -26.68 -0.10 0.60 16 3 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 4 C -0.15 -1.20 4.93 -26.59 -0.13 -1.33 16 5 C -0.10 -0.90 1.99 -90.44 -0.18 -1.08 16 6 H 0.08 0.70 6.62 -51.93 -0.34 0.36 16 7 C 0.12 1.41 5.53 -4.04 -0.02 1.39 16 8 N -1.13 -16.09 5.47 -10.61 -0.06 -16.14 16 9 S 2.62 52.26 5.10 -107.50 -0.55 51.71 16 10 O -0.97 -21.23 17.50 -57.54 -1.01 -22.24 16 11 O -0.95 -22.65 17.57 -57.54 -1.01 -23.66 16 12 C -0.57 -11.59 5.87 37.16 0.22 -11.37 16 13 C 0.02 0.52 0.95 -155.66 -0.15 0.38 16 14 C -0.59 -16.41 7.88 -34.44 -0.27 -16.68 16 15 H 0.06 1.77 7.82 -52.49 -0.41 1.36 16 16 C 0.04 1.13 5.39 -17.82 -0.10 1.03 16 17 N -0.90 -25.69 13.57 55.43 0.75 -24.94 16 18 Si 1.06 25.25 29.91 -169.99 -5.08 20.17 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 C -0.19 -4.12 9.95 -26.69 -0.27 -4.38 16 23 C -0.16 -3.65 8.74 -26.69 -0.23 -3.88 16 24 C -0.15 -1.51 5.28 -26.59 -0.14 -1.65 16 25 C 0.06 0.51 6.51 37.21 0.24 0.75 16 26 O -0.38 -3.88 10.60 -35.23 -0.37 -4.25 16 27 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.48 4.98 -51.93 -0.26 0.22 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.99 7.69 -51.93 -0.40 0.59 16 34 H 0.41 5.07 8.36 -34.47 -0.29 4.78 16 35 H 0.13 2.64 7.79 -51.92 -0.40 2.24 16 36 H 0.10 1.65 8.11 -51.93 -0.42 1.22 16 37 H 0.27 7.64 6.17 -40.82 -0.25 7.39 16 38 H 0.09 1.93 8.14 -51.93 -0.42 1.51 16 39 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 40 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 41 H 0.09 2.09 8.14 -51.93 -0.42 1.67 16 42 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.08 0.77 7.65 -51.93 -0.40 0.38 16 44 H 0.05 0.42 6.34 -51.93 -0.33 0.09 16 45 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 365.86 15.07 5.51 5.51 Total: -1.00 -34.08 365.86 -10.00 -44.08 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -7.37 Total: 6.99 kcal Atomic # 6 Polarization: -36.42 SS G_CDS: -0.81 Total: -37.23 kcal Atomic # 7 Polarization: -41.78 SS G_CDS: 0.69 Total: -41.08 kcal Atomic # 8 Polarization: -47.76 SS G_CDS: -2.39 Total: -50.15 kcal Atomic # 14 Polarization: 25.25 SS G_CDS: -5.08 Total: 20.17 kcal Atomic # 16 Polarization: 52.26 SS G_CDS: -0.55 Total: 51.71 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.08 -10.00 -44.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331832415.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.427 kcal (2) G-P(sol) polarization free energy of solvation -34.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds