Wall clock time and date at job start Tue Mar 31 2020 12:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.48272 * 2 1 4 4 C 1.53098 * 109.47954 * 120.02399 * 2 1 3 5 5 C 1.53175 * 109.16351 * 62.38744 * 4 2 1 6 6 H 1.09006 * 109.54125 * 297.02334 * 5 4 2 7 7 C 1.52997 * 109.54100 * 176.85067 * 5 4 2 8 8 N 1.46504 * 109.47243 * 175.17500 * 7 5 4 9 9 S 1.65590 * 120.00410 * 164.99633 * 8 7 5 10 10 O 1.42105 * 104.27889 * 308.92926 * 9 8 7 11 11 O 1.42098 * 104.28280 * 181.07098 * 9 8 7 12 12 C 1.81406 * 104.44821 * 65.00028 * 9 8 7 13 13 C 1.53000 * 109.46869 * 186.02687 * 12 9 8 14 14 C 1.50694 * 115.55368 * 299.71820 * 13 12 9 15 15 H 1.07995 * 120.00217 * 95.16836 * 14 13 12 16 16 C 1.37882 * 119.99985 * 275.16698 * 14 13 12 17 17 N 1.31516 * 119.99790 * 7.14115 * 16 14 13 18 18 Si 1.86798 * 120.00109 * 187.13538 * 16 14 13 19 19 H 1.48500 * 109.47324 * 180.02562 * 18 16 14 20 20 H 1.48501 * 109.47231 * 60.00127 * 18 16 14 21 21 H 1.48502 * 109.47165 * 300.00313 * 18 16 14 22 22 C 1.53002 * 117.49815 * 85.39084 * 13 12 9 23 23 C 1.53002 * 117.49585 * 154.04722 * 13 12 9 24 24 C 1.53174 * 109.11196 * 56.93505 * 5 4 2 25 25 C 1.53099 * 109.15631 * 303.15259 * 24 5 4 26 26 O 1.42905 * 109.49058 * 57.47551 * 25 24 5 27 27 H 1.08996 * 109.47040 * 299.98204 * 1 2 3 28 28 H 1.08999 * 109.47057 * 59.97816 * 1 2 3 29 29 H 1.09004 * 109.47011 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.51667 * 302.47405 * 4 2 1 31 31 H 1.09003 * 109.57029 * 182.32603 * 4 2 1 32 32 H 1.08997 * 109.47499 * 55.17278 * 7 5 4 33 33 H 1.09002 * 109.47008 * 295.17413 * 7 5 4 34 34 H 0.97001 * 119.99269 * 345.00094 * 8 7 5 35 35 H 1.08998 * 109.46895 * 66.02726 * 12 9 8 36 36 H 1.08997 * 109.47280 * 306.02370 * 12 9 8 37 37 H 0.96997 * 120.00261 * 355.42691 * 17 16 14 38 38 H 1.09003 * 117.49947 * 214.99639 * 22 13 12 39 39 H 1.09001 * 117.49792 * 0.02562 * 22 13 12 40 40 H 1.09000 * 117.50270 * 359.97438 * 23 13 12 41 41 H 1.09000 * 117.49756 * 144.99674 * 23 13 12 42 42 H 1.09002 * 109.51760 * 62.97038 * 24 5 4 43 43 H 1.09000 * 109.51877 * 183.16071 * 24 5 4 44 44 H 1.08996 * 109.41049 * 297.49219 * 25 24 5 45 45 H 1.09004 * 109.49107 * 177.50447 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7222 1.2497 5 6 1.5760 -2.1813 1.2122 6 1 0.4869 -2.2181 1.2424 7 6 2.1469 -2.9313 2.4174 8 7 1.6100 -4.2941 2.4437 9 16 2.3193 -5.4452 3.3996 10 8 3.6986 -5.3780 3.0643 11 8 1.5618 -6.6217 3.1522 12 6 2.0467 -4.8573 5.0940 13 6 2.7910 -5.7655 6.0748 14 6 2.3760 -7.2141 6.0624 15 1 2.9251 -7.9281 5.4665 16 6 1.2952 -7.6281 6.8118 17 7 0.5419 -6.7414 7.4249 18 14 0.9008 -9.4482 6.9561 19 1 -0.3006 -9.6283 7.8100 20 1 2.0536 -10.1576 7.5669 21 1 0.6357 -10.0059 5.6055 22 6 4.2645 -5.4551 6.3461 23 6 3.2105 -5.1623 7.4169 24 6 2.0751 -2.8335 -0.0807 25 6 1.5650 -2.0286 -1.2789 26 8 2.0068 -0.6742 -1.1663 27 1 -0.3633 0.5135 0.8901 28 1 -0.3633 0.5142 -0.8898 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6419 -0.2356 2.1398 31 1 3.1297 -0.6871 1.2723 32 1 1.8668 -2.4126 3.3342 33 1 3.2335 -2.9703 2.3396 34 1 0.8389 -4.5221 1.9011 35 1 0.9802 -4.8770 5.3182 36 1 2.4193 -3.8374 5.1890 37 1 0.7842 -5.8024 7.4050 38 1 4.9336 -6.2987 6.5156 39 1 4.7034 -4.6036 5.8262 40 1 2.9566 -4.1184 7.6009 41 1 3.1862 -5.8133 8.2908 42 1 3.1651 -2.8425 -0.0869 43 1 1.7011 -3.8556 -0.1410 44 1 0.4755 -2.0552 -1.2958 45 1 1.9536 -2.4622 -2.2004 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331832415.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:54 Heat of formation + Delta-G solvation = -140.713097 kcal Electronic energy + Delta-G solvation = -25818.454914 eV Core-core repulsion = 22155.044273 eV Total energy + Delta-G solvation = -3663.410641 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.84562 -38.89986 -38.04131 -37.19537 -36.82400 -34.06017 -33.88638 -32.88244 -29.98761 -29.46260 -27.07641 -26.76027 -24.45277 -23.16991 -22.97472 -21.81866 -20.55663 -20.02084 -18.80392 -18.51825 -17.64540 -17.08262 -17.04000 -16.81080 -16.17637 -15.88513 -15.67739 -15.63883 -15.43675 -14.99261 -14.67901 -14.55637 -14.28664 -13.83263 -13.67304 -13.48241 -13.09582 -13.04525 -12.98997 -12.94299 -12.70240 -12.68298 -12.65525 -12.36741 -12.13187 -12.10714 -11.94985 -11.87333 -11.59272 -11.47246 -10.97150 -10.60987 -10.57400 -10.53238 -10.37732 -10.07961 -8.63144 -6.41129 -0.58424 1.51682 1.58433 1.77632 1.98880 2.53214 2.88973 2.97384 3.11636 3.15512 3.37389 3.61304 3.75050 3.76115 3.83898 4.02481 4.12643 4.19945 4.32886 4.34508 4.39300 4.42053 4.42492 4.47830 4.59679 4.63289 4.68453 4.73783 4.81300 4.82081 4.98006 5.00327 5.01074 5.05314 5.18741 5.21529 5.24137 5.29833 5.41053 5.47687 6.00297 6.09619 6.14878 6.33529 6.63690 7.41548 8.79007 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023773 B = 0.003367 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.522974 B = 8315.183722 C = 8555.893916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.082 3.918 3 H 0.112 0.888 4 C -0.143 4.143 5 C -0.091 4.091 6 H 0.094 0.906 7 C 0.110 3.890 8 N -1.115 6.115 9 S 2.632 3.368 10 O -0.994 6.994 11 O -0.995 6.995 12 C -0.564 4.564 13 C -0.015 4.015 14 C -0.607 4.607 15 H 0.039 0.961 16 C -0.001 4.001 17 N -0.916 5.916 18 Si 1.092 2.908 19 H -0.275 1.275 20 H -0.269 1.269 21 H -0.281 1.281 22 C -0.180 4.180 23 C -0.157 4.157 24 C -0.156 4.156 25 C 0.057 3.943 26 O -0.398 6.398 27 H 0.080 0.920 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.096 0.904 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.421 0.579 35 H 0.118 0.882 36 H 0.140 0.860 37 H 0.272 0.728 38 H 0.080 0.920 39 H 0.104 0.896 40 H 0.098 0.902 41 H 0.067 0.933 42 H 0.061 0.939 43 H 0.073 0.927 44 H 0.064 0.936 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.706 16.048 -12.720 20.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.025 3.975 3 H 0.130 0.870 4 C -0.181 4.181 5 C -0.111 4.111 6 H 0.112 0.888 7 C -0.016 4.016 8 N -0.877 5.877 9 S 2.728 3.272 10 O -0.984 6.984 11 O -0.985 6.985 12 C -0.696 4.696 13 C -0.017 4.017 14 C -0.644 4.644 15 H 0.057 0.943 16 C -0.204 4.204 17 N -0.551 5.551 18 Si 0.915 3.085 19 H -0.200 1.200 20 H -0.194 1.194 21 H -0.206 1.206 22 C -0.217 4.217 23 C -0.196 4.196 24 C -0.194 4.194 25 C -0.019 4.019 26 O -0.318 6.318 27 H 0.099 0.901 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.114 0.886 31 H 0.089 0.911 32 H 0.103 0.897 33 H 0.090 0.910 34 H 0.257 0.743 35 H 0.136 0.864 36 H 0.158 0.842 37 H 0.082 0.918 38 H 0.099 0.901 39 H 0.122 0.878 40 H 0.117 0.883 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.092 0.908 44 H 0.082 0.918 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.079 14.342 -12.453 19.025 hybrid contribution 0.424 0.955 -0.064 1.047 sum -0.654 15.297 -12.517 19.777 Atomic orbital electron populations 1.22453 0.95519 1.02935 1.03364 1.22320 0.94212 0.96641 0.84349 0.86982 1.22227 1.02127 0.94159 0.99633 1.21411 1.01586 0.94978 0.93082 0.88753 1.21620 0.98919 0.80713 1.00304 1.55477 1.47222 1.24084 1.60899 1.04039 0.73376 0.73115 0.76651 1.93461 1.35142 1.86838 1.82952 1.93494 1.72627 1.47462 1.84897 1.29970 1.09694 1.09127 1.20789 1.18658 0.93685 0.93575 0.95761 1.21595 1.18150 0.92280 1.32408 0.94307 1.26830 0.92139 1.09153 0.92256 1.70843 1.36894 1.04133 1.43231 0.83271 0.77099 0.71031 0.77138 1.19959 1.19365 1.20649 1.23115 0.91991 1.02721 1.03907 1.22760 1.03963 1.00109 0.92751 1.22282 1.01722 1.00088 0.95291 1.22638 0.99399 0.81687 0.98187 1.87964 1.74308 1.25302 1.44176 0.90116 0.91945 0.91978 0.88576 0.91068 0.89667 0.91035 0.74309 0.86359 0.84190 0.91754 0.90091 0.87800 0.88323 0.91437 0.91973 0.90790 0.91760 0.88452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.12 8.65 71.98 0.62 -1.50 16 2 C 0.08 1.14 3.91 30.63 0.12 1.26 16 3 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 4 C -0.14 -1.96 4.93 30.69 0.15 -1.81 16 5 C -0.09 -1.49 1.99 -10.68 -0.02 -1.51 16 6 H 0.09 1.34 6.62 -2.38 -0.02 1.32 16 7 C 0.11 2.29 5.53 86.38 0.48 2.77 16 8 N -1.12 -29.88 5.47 -187.49 -1.03 -30.91 16 9 S 2.63 103.43 5.10 -56.49 -0.29 103.14 16 10 O -0.99 -42.87 17.50 -127.65 -2.23 -45.10 16 11 O -0.99 -48.38 17.57 -127.65 -2.24 -50.62 16 12 C -0.56 -22.07 5.87 71.98 0.42 -21.65 16 13 C -0.01 -0.69 0.95 -52.93 -0.05 -0.74 16 14 C -0.61 -33.99 7.88 25.60 0.20 -33.79 16 15 H 0.04 2.28 7.82 -2.91 -0.02 2.26 16 16 C 0.00 -0.05 5.39 84.66 0.46 0.40 16 17 N -0.92 -52.56 13.57 21.45 0.29 -52.27 16 18 Si 1.09 51.15 29.91 68.60 2.05 53.20 16 19 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 20 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 21 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 22 C -0.18 -7.52 9.95 30.62 0.30 -7.21 16 23 C -0.16 -6.71 8.74 30.62 0.27 -6.45 16 24 C -0.16 -2.88 5.28 30.69 0.16 -2.72 16 25 C 0.06 0.94 6.51 72.02 0.47 1.41 16 26 O -0.40 -7.51 10.60 -148.98 -1.58 -9.08 16 27 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.06 0.74 4.98 -2.38 -0.01 0.73 16 30 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.07 1.64 7.69 -2.39 -0.02 1.62 16 34 H 0.42 9.78 8.36 -96.75 -0.81 8.97 16 35 H 0.12 4.84 7.79 -2.39 -0.02 4.82 16 36 H 0.14 4.18 8.11 -2.39 -0.02 4.16 16 37 H 0.27 15.10 6.17 -92.71 -0.57 14.53 16 38 H 0.08 3.46 8.14 -2.39 -0.02 3.44 16 39 H 0.10 3.71 8.14 -2.39 -0.02 3.69 16 40 H 0.10 3.60 8.14 -2.39 -0.02 3.58 16 41 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 42 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.07 1.40 7.65 -2.39 -0.02 1.38 16 44 H 0.06 0.90 6.34 -2.39 -0.02 0.88 16 45 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 Total: -1.00 -73.88 365.86 -1.08 -74.96 By element: Atomic # 1 Polarization: 27.86 SS G_CDS: 0.37 Total: 28.23 kcal Atomic # 6 Polarization: -75.13 SS G_CDS: 3.58 Total: -71.54 kcal Atomic # 7 Polarization: -82.44 SS G_CDS: -0.73 Total: -83.17 kcal Atomic # 8 Polarization: -98.76 SS G_CDS: -6.05 Total: -104.81 kcal Atomic # 14 Polarization: 51.15 SS G_CDS: 2.05 Total: 53.20 kcal Atomic # 16 Polarization: 103.43 SS G_CDS: -0.29 Total: 103.14 kcal Total: -73.88 -1.08 -74.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331832415.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.758 kcal (2) G-P(sol) polarization free energy of solvation -73.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds