Wall clock time and date at job start Tue Mar 31 2020 12:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47815 * 2 1 4 4 C 1.53089 * 109.48139 * 120.02095 * 2 1 3 5 5 C 1.53184 * 109.16308 * 177.59224 * 4 2 1 6 6 H 1.09002 * 109.61422 * 62.92976 * 5 4 2 7 7 S 1.81400 * 109.54153 * 183.15313 * 5 4 2 8 8 O 1.42099 * 110.54203 * 294.80533 * 7 5 4 9 9 O 1.42095 * 110.54193 * 71.56241 * 7 5 4 10 10 N 1.65603 * 104.44707 * 183.18195 * 7 5 4 11 11 C 1.46506 * 120.00093 * 78.91128 * 10 7 5 12 12 C 1.50703 * 109.47065 * 94.72465 * 11 10 7 13 13 H 1.07999 * 119.99729 * 355.71808 * 12 11 10 14 14 C 1.37868 * 119.99953 * 175.71808 * 12 11 10 15 15 N 1.31519 * 119.99904 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 120.00182 * 0.02562 * 14 12 11 17 17 H 1.48499 * 109.47603 * 89.99719 * 16 14 12 18 18 H 1.48503 * 109.47033 * 210.00054 * 16 14 12 19 19 H 1.48498 * 109.47040 * 329.99582 * 16 14 12 20 20 C 1.46494 * 120.00167 * 258.91471 * 10 7 5 21 21 C 1.53002 * 109.47559 * 94.99945 * 20 10 7 22 22 C 1.52998 * 117.50044 * 243.74923 * 21 20 10 23 23 C 1.53000 * 117.50061 * 175.08890 * 21 20 10 24 24 C 1.53174 * 109.03603 * 303.02076 * 5 4 2 25 25 C 1.53096 * 109.21487 * 56.94621 * 24 5 4 26 26 O 1.42899 * 109.47973 * 239.96728 * 2 1 3 27 27 H 1.09001 * 109.46946 * 299.97399 * 1 2 3 28 28 H 1.09000 * 109.47515 * 59.97800 * 1 2 3 29 29 H 1.09002 * 109.47069 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.52481 * 57.69108 * 4 2 1 31 31 H 1.08995 * 109.57671 * 297.52676 * 4 2 1 32 32 H 1.08995 * 109.47253 * 214.73084 * 11 10 7 33 33 H 1.09005 * 109.46960 * 334.72917 * 11 10 7 34 34 H 0.96999 * 119.99904 * 180.02562 * 15 14 12 35 35 H 1.09007 * 109.47496 * 215.00079 * 20 10 7 36 36 H 1.08997 * 109.47492 * 334.99886 * 20 10 7 37 37 H 1.08996 * 115.54568 * 29.41530 * 21 20 10 38 38 H 1.09003 * 117.49913 * 359.97438 * 22 21 20 39 39 H 1.09000 * 117.50340 * 145.01479 * 22 21 20 40 40 H 1.09000 * 117.49587 * 214.97610 * 23 21 20 41 41 H 1.08997 * 117.49817 * 359.97438 * 23 21 20 42 42 H 1.08999 * 109.52519 * 176.88314 * 24 5 4 43 43 H 1.09000 * 109.52234 * 297.01177 * 24 5 4 44 44 H 1.09003 * 109.47873 * 62.40963 * 25 24 5 45 45 H 1.09004 * 109.47893 * 182.44104 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0406 -0.7221 1.2496 5 6 3.5712 -0.7707 1.2122 6 1 3.9703 0.2432 1.2415 7 16 4.1837 -1.7054 2.6411 8 8 3.8752 -1.0264 3.8506 9 8 3.9059 -3.0904 2.4870 10 7 5.8325 -1.6043 2.5250 11 6 6.5240 -0.3870 2.9569 12 6 6.9884 -0.5516 4.3811 13 1 6.7290 -1.4423 4.9341 14 6 7.7444 0.4347 4.9780 15 7 8.1493 0.2913 6.2211 16 14 8.1925 1.9756 4.0217 17 1 7.1418 3.0057 4.2220 18 1 9.4959 2.4972 4.5060 19 1 8.2963 1.6487 2.5769 20 6 6.5998 -2.7319 1.9903 21 6 6.8469 -2.5177 0.4956 22 6 6.2235 -3.5230 -0.4747 23 6 7.7339 -3.5339 -0.2265 24 6 4.0177 -1.4600 -0.0807 25 6 3.4306 -0.7107 -1.2798 26 8 2.0065 -0.6743 -1.1663 27 1 -0.3633 0.5134 0.8902 28 1 -0.3634 0.5142 -0.8898 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6444 -1.7373 1.2711 31 1 1.7149 -0.1850 2.1404 32 1 7.3847 -0.2098 2.3122 33 1 5.8416 0.4606 2.8930 34 1 8.6809 0.9854 6.6412 35 1 7.5553 -2.8004 2.5104 36 1 6.0392 -3.6550 2.1372 37 1 6.9073 -1.4782 0.1734 38 1 5.6376 -4.3372 -0.0483 39 1 5.8740 -3.1450 -1.4355 40 1 8.3775 -3.1629 -1.0242 41 1 8.1417 -4.3548 0.3633 42 1 5.1059 -1.4497 -0.1420 43 1 3.6623 -2.4904 -0.0856 44 1 3.8191 0.3075 -1.2978 45 1 3.7099 -1.2229 -2.2006 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332174199.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:06 Heat of formation + Delta-G solvation = -91.970304 kcal Electronic energy + Delta-G solvation = -26884.972644 eV Core-core repulsion = 23223.675649 eV Total energy + Delta-G solvation = -3661.296995 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.56175 -37.90445 -36.57492 -35.41363 -34.95656 -33.92532 -32.92689 -32.34042 -28.44144 -28.05483 -25.70713 -24.67194 -22.85617 -22.21110 -22.08817 -20.65139 -20.34086 -18.22498 -17.30377 -16.97458 -16.49898 -16.41336 -15.81708 -15.72890 -15.12544 -14.74238 -14.54275 -14.22435 -14.15663 -13.84035 -13.56089 -12.76749 -12.59037 -12.57246 -12.51627 -12.13848 -12.01191 -11.89794 -11.80212 -11.56687 -11.46123 -11.41587 -11.34140 -11.27633 -11.05628 -11.01621 -10.72822 -10.55297 -10.35027 -10.23565 -10.15907 -9.66474 -9.55406 -9.40465 -8.61770 -8.13480 -6.09023 -4.07861 0.71081 3.15599 3.23131 3.26729 3.31964 3.59759 3.88820 4.18474 4.22644 4.34882 4.46859 4.63859 4.80161 4.89994 4.97832 4.99693 5.03302 5.07125 5.14576 5.21045 5.22500 5.34097 5.42223 5.47442 5.52075 5.53899 5.61778 5.70526 5.71680 5.74632 5.86228 5.95411 5.96266 6.03192 6.04278 6.20413 6.39711 6.46959 6.63262 7.03046 7.06979 7.31260 7.55107 8.48675 8.99357 9.49295 11.04735 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012596 B = 0.005634 C = 0.004792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2222.326293 B = 4969.018884 C = 5841.341459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.096 3.904 3 H 0.062 0.938 4 C -0.137 4.137 5 C -0.605 4.605 6 H 0.133 0.867 7 S 2.608 3.392 8 O -0.934 6.934 9 O -0.966 6.966 10 N -0.974 5.974 11 C 0.225 3.775 12 C -0.524 4.524 13 H 0.080 0.920 14 C 0.073 3.927 15 N -0.894 5.894 16 Si 0.868 3.132 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.264 1.264 20 C 0.151 3.849 21 C -0.176 4.176 22 C -0.187 4.187 23 C -0.173 4.173 24 C -0.147 4.147 25 C 0.071 3.929 26 O -0.380 6.380 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.037 0.963 33 H 0.022 0.978 34 H 0.264 0.736 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.109 0.891 38 H 0.100 0.900 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.096 0.904 42 H 0.102 0.898 43 H 0.088 0.912 44 H 0.050 0.950 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.538 -2.257 -17.168 19.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.038 3.962 3 H 0.080 0.920 4 C -0.176 4.176 5 C -0.712 4.712 6 H 0.151 0.849 7 S 2.699 3.301 8 O -0.924 6.924 9 O -0.957 6.957 10 N -0.811 5.811 11 C 0.102 3.898 12 C -0.564 4.564 13 H 0.098 0.902 14 C -0.130 4.130 15 N -0.533 5.533 16 Si 0.695 3.305 17 H -0.200 1.200 18 H -0.209 1.209 19 H -0.189 1.189 20 C 0.025 3.975 21 C -0.196 4.196 22 C -0.224 4.224 23 C -0.211 4.211 24 C -0.185 4.185 25 C -0.007 4.007 26 O -0.299 6.299 27 H 0.092 0.908 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.102 0.898 31 H 0.107 0.893 32 H 0.055 0.945 33 H 0.039 0.961 34 H 0.074 0.926 35 H 0.111 0.889 36 H 0.105 0.895 37 H 0.127 0.873 38 H 0.118 0.882 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.114 0.886 42 H 0.120 0.880 43 H 0.107 0.893 44 H 0.069 0.931 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -9.028 -2.675 -16.452 18.956 hybrid contribution 0.774 1.601 -0.679 1.903 sum -8.254 -1.074 -17.131 19.046 Atomic orbital electron populations 1.21803 0.92799 1.03215 1.02639 1.21956 0.94957 0.94912 0.84399 0.92049 1.22024 0.91332 1.03475 1.00751 1.30728 1.05607 1.15574 1.19291 0.84912 1.05221 0.73954 0.74930 0.75976 1.93649 1.83256 1.76380 1.39108 1.93494 1.84323 1.30403 1.87458 1.57161 1.22918 1.24189 1.76810 1.19466 0.92885 0.80705 0.96771 1.21356 1.32515 1.06800 0.95680 0.90187 1.24871 0.95479 0.97861 0.94789 1.69894 1.36859 1.34366 1.12167 0.86991 0.78500 0.84273 0.80766 1.19972 1.20909 1.18922 1.20826 0.98412 0.88742 0.89520 1.23067 1.04957 0.96353 0.95237 1.23226 0.96028 1.02581 1.00556 1.22930 0.93217 1.01965 1.02986 1.22312 1.03391 1.00441 0.92337 1.22482 0.80882 0.99515 0.97813 1.87896 1.21166 1.78055 1.42763 0.90781 0.91675 0.91564 0.89786 0.89288 0.94527 0.96061 0.92551 0.88860 0.89473 0.87300 0.88185 0.89078 0.89061 0.88589 0.87976 0.89300 0.93123 0.88528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.56 37.16 0.36 -0.98 16 2 C 0.10 1.07 3.27 -26.69 -0.09 0.99 16 3 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 4 C -0.14 -1.72 4.71 -26.59 -0.13 -1.84 16 5 C -0.61 -8.38 2.94 -26.55 -0.08 -8.46 16 6 H 0.13 1.70 8.14 -51.92 -0.42 1.28 16 7 S 2.61 48.58 4.77 -107.50 -0.51 48.07 16 8 O -0.93 -21.66 17.38 -57.54 -1.00 -22.66 16 9 O -0.97 -18.80 16.02 -57.54 -0.92 -19.73 16 10 N -0.97 -18.69 2.66 -115.66 -0.31 -19.00 16 11 C 0.23 5.02 4.13 -5.19 -0.02 5.00 16 12 C -0.52 -14.62 9.87 -34.44 -0.34 -14.96 16 13 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 14 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 15 N -0.89 -27.23 13.96 55.43 0.77 -26.46 16 16 Si 0.87 20.45 27.56 -169.99 -4.68 15.76 16 17 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.26 -5.71 6.42 56.52 0.36 -5.35 16 20 C 0.15 2.50 5.89 -4.04 -0.02 2.47 16 21 C -0.18 -2.27 4.11 -90.62 -0.37 -2.64 16 22 C -0.19 -2.02 8.29 -26.69 -0.22 -2.24 16 23 C -0.17 -1.88 10.25 -26.69 -0.27 -2.16 16 24 C -0.15 -1.75 4.28 -26.59 -0.11 -1.86 16 25 C 0.07 0.74 6.85 37.21 0.25 1.00 16 26 O -0.38 -4.61 10.40 -35.23 -0.37 -4.97 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.04 0.77 6.86 -51.93 -0.36 0.42 16 33 H 0.02 0.46 7.56 -51.93 -0.39 0.07 16 34 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 35 H 0.09 1.62 8.11 -51.92 -0.42 1.20 16 36 H 0.09 1.42 6.47 -51.93 -0.34 1.08 16 37 H 0.11 1.37 7.25 -51.93 -0.38 1.00 16 38 H 0.10 1.13 8.03 -51.93 -0.42 0.72 16 39 H 0.09 0.83 8.05 -51.93 -0.42 0.41 16 40 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.10 1.15 3.72 -51.93 -0.19 0.95 16 43 H 0.09 1.09 7.74 -51.93 -0.40 0.69 16 44 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 362.73 15.07 5.47 5.47 Total: -1.00 -34.10 362.73 -10.26 -44.36 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -7.56 Total: 2.89 kcal Atomic # 6 Polarization: -22.58 SS G_CDS: -1.14 Total: -23.72 kcal Atomic # 7 Polarization: -45.93 SS G_CDS: 0.47 Total: -45.46 kcal Atomic # 8 Polarization: -45.08 SS G_CDS: -2.29 Total: -47.36 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -4.68 Total: 15.76 kcal Atomic # 16 Polarization: 48.58 SS G_CDS: -0.51 Total: 48.07 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.10 -10.26 -44.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332174199.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.611 kcal (2) G-P(sol) polarization free energy of solvation -34.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds