Wall clock time and date at job start Tue Mar 31 2020 12:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.48877 * 2 1 4 4 C 1.53089 * 109.47873 * 239.97634 * 2 1 3 5 5 C 1.53180 * 109.16252 * 182.40816 * 4 2 1 6 6 H 1.09001 * 109.54611 * 297.02538 * 5 4 2 7 7 S 1.81400 * 109.54373 * 176.84189 * 5 4 2 8 8 O 1.42103 * 110.53983 * 73.55730 * 7 5 4 9 9 O 1.42095 * 110.55000 * 296.80468 * 7 5 4 10 10 N 1.65600 * 104.44985 * 185.17605 * 7 5 4 11 11 C 1.46506 * 119.99770 * 90.00233 * 10 7 5 12 12 C 1.50700 * 109.46957 * 95.00038 * 11 10 7 13 13 H 1.08002 * 119.99770 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00083 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00147 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00278 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46986 * 270.00126 * 16 14 12 18 18 H 1.48496 * 109.47029 * 30.00143 * 16 14 12 19 19 H 1.48499 * 109.47352 * 149.99973 * 16 14 12 20 20 C 1.46505 * 120.00319 * 270.00378 * 10 7 5 21 21 C 1.53000 * 109.46806 * 265.00038 * 20 10 7 22 22 C 1.53000 * 117.49331 * 243.61723 * 21 20 10 23 23 C 1.52999 * 60.00262 * 252.51607 * 22 21 20 24 24 C 1.53184 * 109.10682 * 56.93698 * 5 4 2 25 25 C 1.53099 * 109.15435 * 303.14890 * 24 5 4 26 26 O 1.42896 * 109.47978 * 120.03310 * 2 1 3 27 27 H 1.08990 * 109.47438 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46984 * 300.03251 * 1 2 3 29 29 H 1.09006 * 109.46686 * 60.02541 * 1 2 3 30 30 H 1.08995 * 109.52724 * 62.50289 * 4 2 1 31 31 H 1.08998 * 109.57413 * 302.34203 * 4 2 1 32 32 H 1.08994 * 109.47197 * 335.00426 * 11 10 7 33 33 H 1.08998 * 109.47414 * 215.00107 * 11 10 7 34 34 H 0.97005 * 119.99661 * 359.97438 * 15 14 12 35 35 H 1.08994 * 109.46631 * 24.99952 * 20 10 7 36 36 H 1.09000 * 109.46667 * 145.00108 * 20 10 7 37 37 H 1.08991 * 115.55124 * 29.33126 * 21 20 10 38 38 H 1.08995 * 117.50370 * 0.02562 * 22 21 20 39 39 H 1.09006 * 117.49367 * 145.02420 * 22 21 20 40 40 H 1.09002 * 117.49856 * 252.51531 * 23 22 21 41 41 H 1.08999 * 117.49526 * 107.49094 * 23 22 21 42 42 H 1.08990 * 109.52676 * 62.96805 * 24 5 4 43 43 H 1.09005 * 109.51920 * 183.15839 * 24 5 4 44 44 H 1.09006 * 109.40991 * 297.49809 * 25 24 5 45 45 H 1.09003 * 109.49229 * 177.50905 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0405 -0.7222 -1.2496 5 6 3.5711 -0.7708 -1.2122 6 1 3.9690 0.2436 -1.2424 7 16 4.1836 -1.7057 -2.6410 8 8 4.0486 -0.9420 -3.8317 9 8 3.7404 -3.0545 -2.5816 10 7 5.8193 -1.8024 -2.4011 11 6 6.3847 -2.9286 -1.6539 12 6 6.8255 -4.0001 -2.6175 13 1 6.6977 -3.8564 -3.6803 14 6 7.3920 -5.1638 -2.1425 15 7 7.5473 -5.3390 -0.8483 16 14 7.9391 -6.4918 -3.3369 17 1 6.8155 -7.4315 -3.5809 18 1 8.3481 -5.8656 -4.6198 19 1 9.0886 -7.2338 -2.7597 20 6 6.7009 -0.7618 -2.9362 21 6 7.2428 -1.2028 -4.2973 22 6 8.7530 -1.4142 -4.4216 23 6 8.0942 -0.1991 -5.0775 24 6 4.0195 -1.4589 0.0808 25 6 3.4307 -0.7094 1.2789 26 8 2.0065 -0.6743 1.1663 27 1 -0.3634 -1.0275 0.0005 28 1 -0.3633 0.5143 0.8897 29 1 -0.3633 0.5135 -0.8903 30 1 1.7149 -0.1842 -2.1399 31 1 1.6443 -1.7373 -1.2722 32 1 5.6294 -3.3338 -0.9807 33 1 7.2420 -2.5862 -1.0742 34 1 7.2635 -4.6493 -0.2281 35 1 6.1399 0.1656 -3.0515 36 1 7.5317 -0.6009 -2.2491 37 1 6.5928 -1.8640 -4.8702 38 1 9.3604 -1.2395 -3.5336 39 1 9.0969 -2.2150 -5.0763 40 1 8.0046 -0.2004 -6.1639 41 1 8.2682 0.7753 -4.6211 42 1 3.6644 -2.4893 0.0871 43 1 5.1078 -1.4473 0.1411 44 1 3.8193 0.3089 1.2957 45 1 3.7099 -1.2203 2.2005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332174200.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:10 Heat of formation + Delta-G solvation = -101.889910 kcal Electronic energy + Delta-G solvation = -26624.880889 eV Core-core repulsion = 22963.153748 eV Total energy + Delta-G solvation = -3661.727141 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.52101 -37.54921 -36.62189 -35.39827 -34.92047 -33.92095 -32.92618 -32.48864 -28.07652 -27.56457 -25.33735 -24.51400 -22.70524 -22.45826 -21.91388 -20.58673 -20.32868 -18.34147 -17.26283 -16.91850 -16.49795 -16.36238 -15.83456 -15.51637 -15.10637 -14.67452 -14.38178 -14.05862 -13.83944 -13.68946 -13.45231 -12.78193 -12.69759 -12.64139 -12.56899 -12.08281 -11.92252 -11.91113 -11.54226 -11.45625 -11.31237 -11.22910 -11.19797 -11.07415 -11.01450 -10.99513 -10.67575 -10.49937 -10.27402 -10.08838 -9.91059 -9.49361 -9.40527 -9.22092 -8.33714 -7.94868 -6.34046 -4.03906 0.67785 3.18337 3.47774 3.50781 3.62725 3.65593 4.16801 4.23555 4.30661 4.43973 4.57040 4.65081 4.83183 4.95337 5.01209 5.07489 5.15762 5.20443 5.25233 5.32369 5.38974 5.41573 5.44050 5.46333 5.54781 5.66050 5.68537 5.76538 5.80248 5.89119 5.95090 5.96602 6.07679 6.12584 6.32318 6.41239 6.53525 6.75676 6.87079 7.09692 7.15098 7.41190 8.05613 8.52308 8.85377 9.62751 11.03855 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014075 B = 0.005109 C = 0.004304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.804635 B = 5479.000442 C = 6504.519720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.097 3.903 3 H 0.060 0.940 4 C -0.138 4.138 5 C -0.605 4.605 6 H 0.128 0.872 7 S 2.606 3.394 8 O -0.968 6.968 9 O -0.931 6.931 10 N -0.977 5.977 11 C 0.247 3.753 12 C -0.591 4.591 13 H 0.056 0.944 14 C 0.020 3.980 15 N -0.915 5.915 16 Si 1.068 2.932 17 H -0.287 1.287 18 H -0.289 1.289 19 H -0.285 1.285 20 C 0.168 3.832 21 C -0.144 4.144 22 C -0.163 4.163 23 C -0.192 4.192 24 C -0.139 4.139 25 C 0.071 3.929 26 O -0.378 6.378 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.029 0.971 33 H 0.023 0.977 34 H 0.265 0.735 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.105 0.895 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.093 0.907 44 H 0.050 0.950 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.900 14.066 1.407 15.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.038 3.962 3 H 0.078 0.922 4 C -0.177 4.177 5 C -0.711 4.711 6 H 0.146 0.854 7 S 2.697 3.303 8 O -0.958 6.958 9 O -0.922 6.922 10 N -0.815 5.815 11 C 0.125 3.875 12 C -0.630 4.630 13 H 0.075 0.925 14 C -0.183 4.183 15 N -0.552 5.552 16 Si 0.896 3.104 17 H -0.214 1.214 18 H -0.215 1.215 19 H -0.211 1.211 20 C 0.041 3.959 21 C -0.164 4.164 22 C -0.200 4.200 23 C -0.230 4.230 24 C -0.177 4.177 25 C -0.006 4.006 26 O -0.297 6.297 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.103 0.897 31 H 0.107 0.893 32 H 0.047 0.953 33 H 0.041 0.959 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.123 0.877 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.109 0.891 43 H 0.112 0.888 44 H 0.069 0.931 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.799 12.120 0.751 13.917 hybrid contribution -0.249 1.964 0.354 2.012 sum -7.049 14.085 1.105 15.789 Atomic orbital electron populations 1.21804 0.92797 1.03369 1.02534 1.21946 0.95009 0.94714 0.84548 0.92214 1.22035 0.91311 1.03828 1.00511 1.30775 1.05715 1.14934 1.19723 0.85374 1.05324 0.74056 0.75183 0.75742 1.93537 1.86051 1.74236 1.42006 1.93626 1.80648 1.31396 1.86492 1.57327 1.22190 1.32912 1.69079 1.19186 0.93779 0.82844 0.91697 1.22260 1.43379 1.02829 0.94568 0.92522 1.25689 0.94735 0.99032 0.98866 1.70805 1.45696 1.36801 1.01878 0.83556 0.76707 0.75585 0.74503 1.21399 1.21489 1.21109 1.20595 0.93978 0.88450 0.92848 1.22607 0.94192 1.01775 0.97784 1.22857 0.95780 0.98847 1.02498 1.22963 1.06421 0.94484 0.99115 1.22024 1.02546 1.00874 0.92263 1.22496 0.80691 0.99360 0.98062 1.87926 1.21229 1.77996 1.42541 0.91423 0.91621 0.90911 0.89717 0.89327 0.95296 0.95937 0.92465 0.91465 0.90892 0.87696 0.89054 0.89211 0.89389 0.89396 0.89054 0.88806 0.93141 0.88135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.56 37.16 0.36 -1.01 16 2 C 0.10 1.09 3.26 -26.68 -0.09 1.01 16 3 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 4 C -0.14 -1.75 4.72 -26.59 -0.13 -1.88 16 5 C -0.61 -8.42 2.95 -26.54 -0.08 -8.49 16 6 H 0.13 1.45 8.14 -51.92 -0.42 1.03 16 7 S 2.61 49.06 4.78 -107.50 -0.51 48.55 16 8 O -0.97 -19.41 16.99 -57.54 -0.98 -20.39 16 9 O -0.93 -21.61 16.98 -57.54 -0.98 -22.59 16 10 N -0.98 -19.11 2.39 -115.66 -0.28 -19.39 16 11 C 0.25 5.77 3.32 -5.19 -0.02 5.75 16 12 C -0.59 -16.09 8.96 -34.44 -0.31 -16.40 16 13 H 0.06 1.59 7.15 -52.49 -0.38 1.21 16 14 C 0.02 0.58 5.46 -17.82 -0.10 0.48 16 15 N -0.91 -26.85 13.65 55.43 0.76 -26.09 16 16 Si 1.07 25.62 29.90 -169.99 -5.08 20.54 16 17 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 18 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 C 0.17 2.84 5.56 -4.04 -0.02 2.82 16 21 C -0.14 -2.59 5.16 -90.62 -0.47 -3.05 16 22 C -0.16 -2.69 10.18 -26.73 -0.27 -2.96 16 23 C -0.19 -2.78 10.25 -26.73 -0.27 -3.05 16 24 C -0.14 -1.94 4.38 -26.58 -0.12 -2.06 16 25 C 0.07 0.85 6.84 37.21 0.25 1.10 16 26 O -0.38 -4.98 10.41 -35.23 -0.37 -5.35 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.03 0.70 6.53 -51.93 -0.34 0.36 16 33 H 0.02 0.53 7.87 -51.93 -0.41 0.12 16 34 H 0.27 7.57 7.22 -40.82 -0.29 7.27 16 35 H 0.07 0.97 7.61 -51.93 -0.40 0.57 16 36 H 0.07 1.13 7.74 -51.93 -0.40 0.73 16 37 H 0.10 2.17 7.91 -51.93 -0.41 1.76 16 38 H 0.09 1.45 8.03 -51.93 -0.42 1.04 16 39 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 40 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.09 1.45 8.13 -51.93 -0.42 1.03 16 43 H 0.09 1.28 6.89 -51.93 -0.36 0.93 16 44 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 369.81 15.07 5.57 5.57 Total: -1.00 -33.79 369.81 -10.81 -44.60 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -7.69 Total: 2.30 kcal Atomic # 6 Polarization: -26.50 SS G_CDS: -1.26 Total: -27.76 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: 0.48 Total: -45.48 kcal Atomic # 8 Polarization: -46.00 SS G_CDS: -2.32 Total: -48.32 kcal Atomic # 14 Polarization: 25.62 SS G_CDS: -5.08 Total: 20.54 kcal Atomic # 16 Polarization: 49.06 SS G_CDS: -0.51 Total: 48.55 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.79 -10.81 -44.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332174200.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.289 kcal (2) G-P(sol) polarization free energy of solvation -33.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds