Wall clock time and date at job start Tue Mar 31 2020 12:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.48877 * 2 1 4 4 C 1.53089 * 109.47873 * 239.97634 * 2 1 3 5 5 C 1.53180 * 109.16252 * 182.40816 * 4 2 1 6 6 H 1.09001 * 109.54611 * 297.02538 * 5 4 2 7 7 S 1.81400 * 109.54373 * 176.84189 * 5 4 2 8 8 O 1.42103 * 110.53983 * 73.55730 * 7 5 4 9 9 O 1.42095 * 110.55000 * 296.80468 * 7 5 4 10 10 N 1.65600 * 104.44985 * 185.17605 * 7 5 4 11 11 C 1.46506 * 119.99770 * 90.00233 * 10 7 5 12 12 C 1.50700 * 109.46957 * 95.00038 * 11 10 7 13 13 H 1.08002 * 119.99770 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00083 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00147 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00278 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46986 * 270.00126 * 16 14 12 18 18 H 1.48496 * 109.47029 * 30.00143 * 16 14 12 19 19 H 1.48499 * 109.47352 * 149.99973 * 16 14 12 20 20 C 1.46505 * 120.00319 * 270.00378 * 10 7 5 21 21 C 1.53000 * 109.46806 * 265.00038 * 20 10 7 22 22 C 1.53000 * 117.49331 * 243.61723 * 21 20 10 23 23 C 1.52999 * 60.00262 * 252.51607 * 22 21 20 24 24 C 1.53184 * 109.10682 * 56.93698 * 5 4 2 25 25 C 1.53099 * 109.15435 * 303.14890 * 24 5 4 26 26 O 1.42896 * 109.47978 * 120.03310 * 2 1 3 27 27 H 1.08990 * 109.47438 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46984 * 300.03251 * 1 2 3 29 29 H 1.09006 * 109.46686 * 60.02541 * 1 2 3 30 30 H 1.08995 * 109.52724 * 62.50289 * 4 2 1 31 31 H 1.08998 * 109.57413 * 302.34203 * 4 2 1 32 32 H 1.08994 * 109.47197 * 335.00426 * 11 10 7 33 33 H 1.08998 * 109.47414 * 215.00107 * 11 10 7 34 34 H 0.97005 * 119.99661 * 359.97438 * 15 14 12 35 35 H 1.08994 * 109.46631 * 24.99952 * 20 10 7 36 36 H 1.09000 * 109.46667 * 145.00108 * 20 10 7 37 37 H 1.08991 * 115.55124 * 29.33126 * 21 20 10 38 38 H 1.08995 * 117.50370 * 0.02562 * 22 21 20 39 39 H 1.09006 * 117.49367 * 145.02420 * 22 21 20 40 40 H 1.09002 * 117.49856 * 252.51531 * 23 22 21 41 41 H 1.08999 * 117.49526 * 107.49094 * 23 22 21 42 42 H 1.08990 * 109.52676 * 62.96805 * 24 5 4 43 43 H 1.09005 * 109.51920 * 183.15839 * 24 5 4 44 44 H 1.09006 * 109.40991 * 297.49809 * 25 24 5 45 45 H 1.09003 * 109.49229 * 177.50905 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0405 -0.7222 -1.2496 5 6 3.5711 -0.7708 -1.2122 6 1 3.9690 0.2436 -1.2424 7 16 4.1836 -1.7057 -2.6410 8 8 4.0486 -0.9420 -3.8317 9 8 3.7404 -3.0545 -2.5816 10 7 5.8193 -1.8024 -2.4011 11 6 6.3847 -2.9286 -1.6539 12 6 6.8255 -4.0001 -2.6175 13 1 6.6977 -3.8564 -3.6803 14 6 7.3920 -5.1638 -2.1425 15 7 7.5473 -5.3390 -0.8483 16 14 7.9391 -6.4918 -3.3369 17 1 6.8155 -7.4315 -3.5809 18 1 8.3481 -5.8656 -4.6198 19 1 9.0886 -7.2338 -2.7597 20 6 6.7009 -0.7618 -2.9362 21 6 7.2428 -1.2028 -4.2973 22 6 8.7530 -1.4142 -4.4216 23 6 8.0942 -0.1991 -5.0775 24 6 4.0195 -1.4589 0.0808 25 6 3.4307 -0.7094 1.2789 26 8 2.0065 -0.6743 1.1663 27 1 -0.3634 -1.0275 0.0005 28 1 -0.3633 0.5143 0.8897 29 1 -0.3633 0.5135 -0.8903 30 1 1.7149 -0.1842 -2.1399 31 1 1.6443 -1.7373 -1.2722 32 1 5.6294 -3.3338 -0.9807 33 1 7.2420 -2.5862 -1.0742 34 1 7.2635 -4.6493 -0.2281 35 1 6.1399 0.1656 -3.0515 36 1 7.5317 -0.6009 -2.2491 37 1 6.5928 -1.8640 -4.8702 38 1 9.3604 -1.2395 -3.5336 39 1 9.0969 -2.2150 -5.0763 40 1 8.0046 -0.2004 -6.1639 41 1 8.2682 0.7753 -4.6211 42 1 3.6644 -2.4893 0.0871 43 1 5.1078 -1.4473 0.1411 44 1 3.8193 0.3089 1.2957 45 1 3.7099 -1.2203 2.2005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332174200.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:10 Heat of formation + Delta-G solvation = -124.869890 kcal Electronic energy + Delta-G solvation = -26625.877376 eV Core-core repulsion = 22963.153748 eV Total energy + Delta-G solvation = -3662.723628 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.49315 -38.93921 -38.22006 -36.99743 -36.53236 -35.02694 -34.50319 -33.76828 -29.35751 -28.92480 -26.94408 -25.66652 -24.45710 -23.57779 -23.15102 -21.71440 -21.60563 -19.85303 -19.15427 -18.41842 -17.82790 -17.37265 -17.29287 -16.72206 -16.28264 -15.87711 -15.69108 -15.60751 -15.26719 -15.17623 -14.83804 -14.45504 -14.17753 -13.71184 -13.54975 -13.34691 -13.20164 -13.14717 -12.99215 -12.93027 -12.92073 -12.77076 -12.54039 -12.33690 -12.29796 -12.24510 -12.14488 -12.01664 -11.96757 -11.31242 -11.27184 -11.07337 -10.72340 -10.53536 -10.46078 -9.66936 -8.55840 -6.26128 -0.78231 1.49694 1.57166 1.68754 1.75057 2.56271 2.76683 2.86189 2.98294 3.04089 3.20809 3.23781 3.53543 3.69635 3.79391 3.89352 3.95862 4.10906 4.17565 4.20680 4.25156 4.30468 4.35687 4.48546 4.50068 4.51735 4.67911 4.77155 4.77911 4.82537 4.84560 4.92126 4.92772 4.97117 5.06138 5.09508 5.28064 5.30282 5.33366 5.38053 5.78807 5.98528 6.21676 6.33033 6.65908 7.45497 8.82316 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014075 B = 0.005109 C = 0.004304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.804635 B = 5479.000442 C = 6504.519720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.094 3.906 3 H 0.086 0.914 4 C -0.148 4.148 5 C -0.568 4.568 6 H 0.170 0.830 7 S 2.595 3.405 8 O -0.987 6.987 9 O -0.991 6.991 10 N -0.982 5.982 11 C 0.261 3.739 12 C -0.596 4.596 13 H 0.039 0.961 14 C -0.027 4.027 15 N -0.938 5.938 16 Si 1.101 2.899 17 H -0.285 1.285 18 H -0.276 1.276 19 H -0.276 1.276 20 C 0.161 3.839 21 C -0.178 4.178 22 C -0.174 4.174 23 C -0.155 4.155 24 C -0.144 4.144 25 C 0.073 3.927 26 O -0.396 6.396 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.106 0.894 31 H 0.070 0.930 32 H 0.017 0.983 33 H 0.025 0.975 34 H 0.260 0.740 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.065 0.935 38 H 0.098 0.902 39 H 0.077 0.923 40 H 0.097 0.903 41 H 0.119 0.881 42 H 0.061 0.939 43 H 0.096 0.904 44 H 0.080 0.920 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.019 17.217 1.896 18.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.036 3.964 3 H 0.104 0.896 4 C -0.187 4.187 5 C -0.681 4.681 6 H 0.188 0.812 7 S 2.694 3.306 8 O -0.977 6.977 9 O -0.982 6.982 10 N -0.819 5.819 11 C 0.137 3.863 12 C -0.636 4.636 13 H 0.057 0.943 14 C -0.225 4.225 15 N -0.577 5.577 16 Si 0.925 3.075 17 H -0.211 1.211 18 H -0.201 1.201 19 H -0.202 1.202 20 C 0.036 3.964 21 C -0.198 4.198 22 C -0.211 4.211 23 C -0.192 4.192 24 C -0.183 4.183 25 C -0.004 4.004 26 O -0.315 6.315 27 H 0.074 0.926 28 H 0.094 0.906 29 H 0.112 0.888 30 H 0.124 0.876 31 H 0.088 0.912 32 H 0.034 0.966 33 H 0.043 0.957 34 H 0.069 0.931 35 H 0.116 0.884 36 H 0.107 0.893 37 H 0.084 0.916 38 H 0.116 0.884 39 H 0.095 0.905 40 H 0.116 0.884 41 H 0.137 0.863 42 H 0.079 0.921 43 H 0.114 0.886 44 H 0.098 0.902 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.889 15.259 1.169 16.783 hybrid contribution -0.304 1.057 0.197 1.117 sum -7.193 16.316 1.366 17.884 Atomic orbital electron populations 1.21859 0.91428 1.03161 1.04110 1.22172 0.96195 0.95306 0.82744 0.89624 1.22254 0.89951 1.03700 1.02824 1.30411 1.06727 1.15372 1.15556 0.81226 1.05375 0.73658 0.74627 0.76977 1.93498 1.86029 1.73861 1.44325 1.93551 1.81360 1.35487 1.87800 1.57143 1.22877 1.32726 1.69125 1.18774 0.93333 0.83279 0.90892 1.22569 1.42564 1.04021 0.94434 0.94278 1.26819 0.94968 1.01185 0.99563 1.70895 1.47370 1.37008 1.02388 0.83121 0.76761 0.73969 0.73626 1.21125 1.20082 1.20159 1.20891 0.94614 0.88588 0.92352 1.22591 0.94366 1.03857 0.99003 1.22887 0.94884 1.00224 1.03123 1.23071 1.02046 0.94618 0.99510 1.22092 1.02886 0.99779 0.93495 1.22601 0.80184 1.00629 0.96986 1.87926 1.21798 1.78515 1.43269 0.92594 0.90565 0.88840 0.87568 0.91170 0.96555 0.95666 0.93076 0.88393 0.89301 0.91646 0.88400 0.90483 0.88445 0.86270 0.92065 0.88566 0.90218 0.87178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.56 71.98 0.69 -1.63 16 2 C 0.09 1.82 3.26 30.62 0.10 1.92 16 3 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 4 C -0.15 -3.46 4.72 30.68 0.14 -3.32 16 5 C -0.57 -14.65 2.95 30.72 0.09 -14.56 16 6 H 0.17 3.05 8.14 -2.39 -0.02 3.03 16 7 S 2.60 98.71 4.78 -56.49 -0.27 98.44 16 8 O -0.99 -39.44 16.99 -127.65 -2.17 -41.61 16 9 O -0.99 -48.53 16.98 -127.65 -2.17 -50.70 16 10 N -0.98 -38.64 2.39 -519.84 -1.24 -39.89 16 11 C 0.26 12.52 3.32 85.63 0.28 12.80 16 12 C -0.60 -33.60 8.96 25.60 0.23 -33.37 16 13 H 0.04 2.29 7.15 -2.91 -0.02 2.27 16 14 C -0.03 -1.55 5.46 84.65 0.46 -1.09 16 15 N -0.94 -56.29 13.65 21.45 0.29 -56.00 16 16 Si 1.10 52.58 29.90 68.60 2.05 54.64 16 17 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 18 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 19 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 20 C 0.16 5.23 5.56 86.38 0.48 5.71 16 21 C -0.18 -6.37 5.16 -10.79 -0.06 -6.43 16 22 C -0.17 -5.66 10.18 30.59 0.31 -5.35 16 23 C -0.15 -4.12 10.25 30.60 0.31 -3.80 16 24 C -0.14 -3.87 4.38 30.69 0.13 -3.74 16 25 C 0.07 1.54 6.84 72.02 0.49 2.03 16 26 O -0.40 -9.42 10.41 -148.98 -1.55 -10.97 16 27 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 30 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.02 0.84 6.53 -2.39 -0.02 0.82 16 33 H 0.03 1.20 7.87 -2.39 -0.02 1.18 16 34 H 0.26 15.27 7.22 -92.70 -0.67 14.60 16 35 H 0.10 2.53 7.61 -2.39 -0.02 2.51 16 36 H 0.09 2.58 7.74 -2.39 -0.02 2.56 16 37 H 0.07 2.84 7.91 -2.39 -0.02 2.82 16 38 H 0.10 3.01 8.03 -2.39 -0.02 2.99 16 39 H 0.08 2.64 8.14 -2.38 -0.02 2.62 16 40 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 41 H 0.12 2.45 8.14 -2.39 -0.02 2.43 16 42 H 0.06 2.02 8.13 -2.39 -0.02 2.00 16 43 H 0.10 2.53 6.89 -2.38 -0.02 2.52 16 44 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 45 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -76.73 369.81 -0.33 -77.05 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: 1.05 Total: 19.85 kcal Atomic # 6 Polarization: -54.49 SS G_CDS: 3.68 Total: -50.81 kcal Atomic # 7 Polarization: -94.94 SS G_CDS: -0.95 Total: -95.89 kcal Atomic # 8 Polarization: -97.39 SS G_CDS: -5.89 Total: -103.27 kcal Atomic # 14 Polarization: 52.58 SS G_CDS: 2.05 Total: 54.64 kcal Atomic # 16 Polarization: 98.71 SS G_CDS: -0.27 Total: 98.44 kcal Total: -76.73 -0.33 -77.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332174200.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.818 kcal (2) G-P(sol) polarization free energy of solvation -76.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds