Wall clock time and date at job start Tue Mar 31 2020 12:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.47426 * 2 1 4 4 C 1.53098 * 109.40414 * 119.99538 * 2 1 3 5 5 C 1.53176 * 109.16152 * 62.50539 * 4 2 1 6 6 H 1.08993 * 109.54678 * 296.93879 * 5 4 2 7 7 S 1.81396 * 109.54453 * 176.75415 * 5 4 2 8 8 O 1.42107 * 110.54189 * 68.59731 * 7 5 4 9 9 O 1.42098 * 110.54626 * 291.84568 * 7 5 4 10 10 N 1.65603 * 104.45052 * 180.21957 * 7 5 4 11 11 C 1.46499 * 119.99864 * 278.97305 * 10 7 5 12 12 C 1.50702 * 109.47440 * 264.99736 * 11 10 7 13 13 H 1.08005 * 119.99731 * 0.02562 * 12 11 10 14 14 C 1.37874 * 120.00119 * 179.97438 * 12 11 10 15 15 N 1.31507 * 120.00124 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99655 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47255 * 60.00446 * 16 14 12 18 18 H 1.48506 * 109.46634 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47404 * 299.99957 * 16 14 12 20 20 C 1.46494 * 120.00131 * 98.97260 * 10 7 5 21 21 C 1.53002 * 109.47191 * 248.70526 * 20 10 7 22 22 C 1.53003 * 117.49970 * 185.74276 * 21 20 10 23 23 C 1.53001 * 117.49691 * 117.12100 * 21 20 10 24 24 C 1.53181 * 109.10484 * 56.84597 * 5 4 2 25 25 C 1.53090 * 109.16727 * 303.06431 * 24 5 4 26 26 O 1.42904 * 109.41332 * 57.60883 * 25 24 5 27 27 H 1.09006 * 109.47051 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47485 * 300.02113 * 1 2 3 29 29 H 1.08998 * 109.47355 * 60.02494 * 1 2 3 30 30 H 1.08997 * 109.59818 * 302.55613 * 4 2 1 31 31 H 1.09001 * 109.45308 * 182.37338 * 4 2 1 32 32 H 1.08997 * 109.47338 * 25.00121 * 11 10 7 33 33 H 1.09004 * 109.47128 * 145.00002 * 11 10 7 34 34 H 0.97003 * 120.00401 * 179.97438 * 15 14 12 35 35 H 1.08998 * 109.47544 * 128.70479 * 20 10 7 36 36 H 1.09005 * 109.46835 * 8.70470 * 20 10 7 37 37 H 1.08994 * 115.56210 * 331.43435 * 21 20 10 38 38 H 1.08999 * 117.49567 * 145.02221 * 22 21 20 39 39 H 1.09001 * 117.49701 * 359.97438 * 22 21 20 40 40 H 1.09000 * 117.50023 * 359.97438 * 23 21 20 41 41 H 1.09001 * 117.51179 * 214.96751 * 23 21 20 42 42 H 1.09004 * 109.52280 * 62.97547 * 24 5 4 43 43 H 1.09001 * 109.52184 * 183.15568 * 24 5 4 44 44 H 1.08998 * 109.48216 * 177.58994 * 25 24 5 45 45 H 1.09004 * 109.47643 * 297.62800 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0387 -0.7219 1.2506 5 6 1.5757 -2.1815 1.2119 6 1 0.4868 -2.2196 1.2412 7 16 2.2528 -3.0710 2.6404 8 8 1.6561 -2.6086 3.8444 9 8 3.6631 -3.2008 2.5245 10 7 1.6852 -4.6175 2.4712 11 6 0.3237 -4.9490 2.8989 12 6 0.3576 -5.4988 4.3016 13 1 1.2991 -5.5916 4.8226 14 6 -0.8134 -5.8823 4.9202 15 7 -1.9598 -5.7688 4.2860 16 14 -0.7714 -6.5631 6.6592 17 1 -0.1984 -5.5449 7.5757 18 1 -2.1515 -6.8991 7.0926 19 1 0.0690 -7.7870 6.6915 20 6 2.5444 -5.6541 1.8939 21 6 1.9998 -6.0632 0.5238 22 6 2.6822 -7.2338 -0.1868 23 6 2.8879 -5.8054 -0.6951 24 6 2.0765 -2.8322 -0.0813 25 6 1.5646 -2.0283 -1.2794 26 8 2.0066 -0.6740 -1.1665 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5141 0.8897 29 1 -0.3634 0.5134 -0.8902 30 1 1.6390 -0.2365 2.1409 31 1 3.1279 -0.6857 1.2730 32 1 -0.2933 -4.0508 2.8754 33 1 -0.0967 -5.6962 2.2258 34 1 -2.7837 -6.0389 4.7210 35 1 2.5594 -6.5222 2.5528 36 1 3.5567 -5.2658 1.7813 37 1 0.9231 -5.9544 0.3941 38 1 2.0544 -7.8950 -0.7841 39 1 3.5194 -7.7121 0.3215 40 1 3.8599 -5.3439 -0.5210 41 1 2.3956 -5.5271 -1.6269 42 1 3.1665 -2.8400 -0.0868 43 1 1.7037 -3.8546 -0.1426 44 1 1.9532 -2.4619 -2.2008 45 1 0.4750 -2.0549 -1.2961 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332174201.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:15 Heat of formation + Delta-G solvation = -96.837362 kcal Electronic energy + Delta-G solvation = -26990.631262 eV Core-core repulsion = 23329.123215 eV Total energy + Delta-G solvation = -3661.508046 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.75128 -37.78192 -36.51882 -35.34492 -34.80675 -33.89109 -32.40391 -32.21327 -28.32040 -27.81243 -25.54405 -24.47893 -23.44001 -22.58870 -22.15468 -20.19524 -19.46086 -18.30374 -17.35462 -16.96630 -16.33214 -16.06630 -15.80118 -15.61451 -14.79759 -14.70626 -14.52372 -14.39122 -13.94222 -13.83394 -13.52361 -13.01494 -12.62113 -12.46958 -12.27022 -11.90688 -11.85012 -11.72022 -11.55803 -11.48096 -11.39413 -11.36318 -11.27949 -11.06624 -11.00336 -10.79923 -10.70393 -10.53364 -10.26914 -10.10265 -9.99446 -9.75003 -9.56147 -9.34428 -8.44122 -8.04235 -6.06743 -4.09256 0.80605 3.27317 3.34408 3.37419 3.43496 3.76493 3.99014 4.27057 4.33202 4.44183 4.49941 4.77212 4.89329 4.96184 4.99093 5.07922 5.11913 5.16675 5.20190 5.28766 5.34274 5.38181 5.48701 5.55129 5.64514 5.67408 5.72467 5.76332 5.80733 5.82499 5.97242 5.99022 6.03510 6.15405 6.18376 6.25716 6.51372 6.60885 7.12560 7.14452 7.34278 7.57100 7.91576 8.20433 8.92892 9.55524 11.01919 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013337 B = 0.005455 C = 0.004606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.920370 B = 5131.428104 C = 6077.402053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.098 3.902 3 H 0.106 0.894 4 C -0.137 4.137 5 C -0.604 4.604 6 H 0.137 0.863 7 S 2.606 3.394 8 O -0.937 6.937 9 O -0.973 6.973 10 N -0.979 5.979 11 C 0.258 3.742 12 C -0.521 4.521 13 H 0.061 0.939 14 C 0.061 3.939 15 N -0.899 5.899 16 Si 0.896 3.104 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.276 1.276 20 C 0.151 3.849 21 C -0.164 4.164 22 C -0.175 4.175 23 C -0.191 4.191 24 C -0.140 4.140 25 C 0.066 3.934 26 O -0.377 6.377 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.031 0.969 33 H 0.038 0.962 34 H 0.263 0.737 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.113 0.887 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.090 0.910 42 H 0.084 0.916 43 H 0.100 0.900 44 H 0.095 0.905 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.230 6.035 -12.842 15.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.039 3.961 3 H 0.123 0.877 4 C -0.176 4.176 5 C -0.711 4.711 6 H 0.155 0.845 7 S 2.698 3.302 8 O -0.927 6.927 9 O -0.964 6.964 10 N -0.817 5.817 11 C 0.136 3.864 12 C -0.560 4.560 13 H 0.079 0.921 14 C -0.140 4.140 15 N -0.539 5.539 16 Si 0.723 3.277 17 H -0.200 1.200 18 H -0.213 1.213 19 H -0.202 1.202 20 C 0.025 3.975 21 C -0.184 4.184 22 C -0.213 4.213 23 C -0.228 4.228 24 C -0.179 4.179 25 C -0.012 4.012 26 O -0.296 6.296 27 H 0.085 0.915 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.106 0.894 31 H 0.101 0.899 32 H 0.049 0.951 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.131 0.869 38 H 0.109 0.891 39 H 0.112 0.888 40 H 0.113 0.887 41 H 0.109 0.891 42 H 0.103 0.897 43 H 0.118 0.882 44 H 0.113 0.887 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.674 6.408 -12.233 15.338 hybrid contribution -0.908 -0.574 0.637 1.249 sum 5.766 5.835 -11.596 14.204 Atomic orbital electron populations 1.22490 0.96126 1.03284 1.02848 1.22017 0.93671 0.95945 0.84460 0.87652 1.21991 1.02335 0.92555 1.00678 1.30718 1.13254 1.08005 1.19114 0.84547 1.05223 0.74288 0.74558 0.76117 1.93632 1.78336 1.81013 1.39755 1.93484 1.29599 1.85630 1.87665 1.57367 1.25868 1.22838 1.75634 1.19030 0.75088 0.96888 0.95427 1.21423 0.93579 1.41733 0.99306 0.92117 1.24906 0.95251 0.95746 0.98125 1.69895 0.97949 1.48287 1.37743 0.86589 0.76945 0.79451 0.84678 1.20005 1.21254 1.20197 1.20786 0.92868 0.92527 0.91335 1.22938 0.99371 1.02614 0.93521 1.22897 1.03305 0.91164 1.03914 1.23154 1.01633 0.99699 0.98277 1.22124 1.02470 1.00821 0.92442 1.22496 0.98964 0.82006 0.97714 1.87956 1.73818 1.24916 1.42893 0.91474 0.91121 0.91778 0.89435 0.89857 0.95080 0.94383 0.92709 0.89919 0.89583 0.86914 0.89056 0.88814 0.88659 0.89145 0.89734 0.88156 0.88661 0.92591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.99 8.65 37.16 0.32 -1.67 16 2 C 0.10 1.10 3.91 -26.68 -0.10 0.99 16 3 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 4 C -0.14 -1.74 4.93 -26.59 -0.13 -1.87 16 5 C -0.60 -8.67 2.63 -26.55 -0.07 -8.74 16 6 H 0.14 1.90 6.62 -51.93 -0.34 1.56 16 7 S 2.61 49.44 4.77 -107.50 -0.51 48.92 16 8 O -0.94 -21.93 17.31 -57.54 -1.00 -22.93 16 9 O -0.97 -19.27 16.09 -57.54 -0.93 -20.20 16 10 N -0.98 -19.26 2.57 -115.66 -0.30 -19.56 16 11 C 0.26 6.11 4.88 -5.19 -0.03 6.09 16 12 C -0.52 -14.34 9.34 -34.44 -0.32 -14.66 16 13 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 14 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 15 N -0.90 -25.70 13.29 55.43 0.74 -24.96 16 16 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 17 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 C 0.15 2.56 6.09 -4.04 -0.02 2.53 16 21 C -0.16 -2.29 4.07 -90.62 -0.37 -2.66 16 22 C -0.18 -2.05 10.25 -26.73 -0.27 -2.33 16 23 C -0.19 -2.13 8.34 -26.73 -0.22 -2.35 16 24 C -0.14 -1.75 4.88 -26.59 -0.13 -1.88 16 25 C 0.07 0.73 6.52 37.20 0.24 0.97 16 26 O -0.38 -4.68 10.60 -35.23 -0.37 -5.06 16 27 H 0.07 0.75 4.98 -51.93 -0.26 0.49 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.03 0.77 7.86 -51.93 -0.41 0.37 16 33 H 0.04 0.91 7.06 -51.93 -0.37 0.54 16 34 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 35 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 36 H 0.09 1.38 6.29 -51.93 -0.33 1.05 16 37 H 0.11 1.68 7.17 -51.93 -0.37 1.31 16 38 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.09 1.05 8.03 -51.93 -0.42 0.63 16 41 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.08 1.07 8.02 -51.93 -0.42 0.65 16 43 H 0.10 1.21 4.36 -51.93 -0.23 0.99 16 44 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.06 0.59 6.34 -51.93 -0.33 0.26 16 LS Contribution 359.71 15.07 5.42 5.42 Total: -1.00 -32.71 359.71 -10.41 -43.13 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -7.24 Total: 2.46 kcal Atomic # 6 Polarization: -22.76 SS G_CDS: -1.21 Total: -23.96 kcal Atomic # 7 Polarization: -44.96 SS G_CDS: 0.44 Total: -44.52 kcal Atomic # 8 Polarization: -45.89 SS G_CDS: -2.30 Total: -48.18 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: 49.44 SS G_CDS: -0.51 Total: 48.92 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.71 -10.41 -43.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332174201.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.711 kcal (2) G-P(sol) polarization free energy of solvation -32.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds