Wall clock time and date at job start Tue Mar 31 2020 12:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.47426 * 2 1 4 4 C 1.53098 * 109.40414 * 119.99538 * 2 1 3 5 5 C 1.53176 * 109.16152 * 62.50539 * 4 2 1 6 6 H 1.08993 * 109.54678 * 296.93879 * 5 4 2 7 7 S 1.81396 * 109.54453 * 176.75415 * 5 4 2 8 8 O 1.42107 * 110.54189 * 68.59731 * 7 5 4 9 9 O 1.42098 * 110.54626 * 291.84568 * 7 5 4 10 10 N 1.65603 * 104.45052 * 180.21957 * 7 5 4 11 11 C 1.46499 * 119.99864 * 278.97305 * 10 7 5 12 12 C 1.50702 * 109.47440 * 264.99736 * 11 10 7 13 13 H 1.08005 * 119.99731 * 0.02562 * 12 11 10 14 14 C 1.37874 * 120.00119 * 179.97438 * 12 11 10 15 15 N 1.31507 * 120.00124 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99655 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47255 * 60.00446 * 16 14 12 18 18 H 1.48506 * 109.46634 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47404 * 299.99957 * 16 14 12 20 20 C 1.46494 * 120.00131 * 98.97260 * 10 7 5 21 21 C 1.53002 * 109.47191 * 248.70526 * 20 10 7 22 22 C 1.53003 * 117.49970 * 185.74276 * 21 20 10 23 23 C 1.53001 * 117.49691 * 117.12100 * 21 20 10 24 24 C 1.53181 * 109.10484 * 56.84597 * 5 4 2 25 25 C 1.53090 * 109.16727 * 303.06431 * 24 5 4 26 26 O 1.42904 * 109.41332 * 57.60883 * 25 24 5 27 27 H 1.09006 * 109.47051 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47485 * 300.02113 * 1 2 3 29 29 H 1.08998 * 109.47355 * 60.02494 * 1 2 3 30 30 H 1.08997 * 109.59818 * 302.55613 * 4 2 1 31 31 H 1.09001 * 109.45308 * 182.37338 * 4 2 1 32 32 H 1.08997 * 109.47338 * 25.00121 * 11 10 7 33 33 H 1.09004 * 109.47128 * 145.00002 * 11 10 7 34 34 H 0.97003 * 120.00401 * 179.97438 * 15 14 12 35 35 H 1.08998 * 109.47544 * 128.70479 * 20 10 7 36 36 H 1.09005 * 109.46835 * 8.70470 * 20 10 7 37 37 H 1.08994 * 115.56210 * 331.43435 * 21 20 10 38 38 H 1.08999 * 117.49567 * 145.02221 * 22 21 20 39 39 H 1.09001 * 117.49701 * 359.97438 * 22 21 20 40 40 H 1.09000 * 117.50023 * 359.97438 * 23 21 20 41 41 H 1.09001 * 117.51179 * 214.96751 * 23 21 20 42 42 H 1.09004 * 109.52280 * 62.97547 * 24 5 4 43 43 H 1.09001 * 109.52184 * 183.15568 * 24 5 4 44 44 H 1.08998 * 109.48216 * 177.58994 * 25 24 5 45 45 H 1.09004 * 109.47643 * 297.62800 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0387 -0.7219 1.2506 5 6 1.5757 -2.1815 1.2119 6 1 0.4868 -2.2196 1.2412 7 16 2.2528 -3.0710 2.6404 8 8 1.6561 -2.6086 3.8444 9 8 3.6631 -3.2008 2.5245 10 7 1.6852 -4.6175 2.4712 11 6 0.3237 -4.9490 2.8989 12 6 0.3576 -5.4988 4.3016 13 1 1.2991 -5.5916 4.8226 14 6 -0.8134 -5.8823 4.9202 15 7 -1.9598 -5.7688 4.2860 16 14 -0.7714 -6.5631 6.6592 17 1 -0.1984 -5.5449 7.5757 18 1 -2.1515 -6.8991 7.0926 19 1 0.0690 -7.7870 6.6915 20 6 2.5444 -5.6541 1.8939 21 6 1.9998 -6.0632 0.5238 22 6 2.6822 -7.2338 -0.1868 23 6 2.8879 -5.8054 -0.6951 24 6 2.0765 -2.8322 -0.0813 25 6 1.5646 -2.0283 -1.2794 26 8 2.0066 -0.6740 -1.1665 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5141 0.8897 29 1 -0.3634 0.5134 -0.8902 30 1 1.6390 -0.2365 2.1409 31 1 3.1279 -0.6857 1.2730 32 1 -0.2933 -4.0508 2.8754 33 1 -0.0967 -5.6962 2.2258 34 1 -2.7837 -6.0389 4.7210 35 1 2.5594 -6.5222 2.5528 36 1 3.5567 -5.2658 1.7813 37 1 0.9231 -5.9544 0.3941 38 1 2.0544 -7.8950 -0.7841 39 1 3.5194 -7.7121 0.3215 40 1 3.8599 -5.3439 -0.5210 41 1 2.3956 -5.5271 -1.6269 42 1 3.1665 -2.8400 -0.0868 43 1 1.7037 -3.8546 -0.1426 44 1 1.9532 -2.4619 -2.2008 45 1 0.4750 -2.0549 -1.2961 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332174201.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:14 Heat of formation + Delta-G solvation = -118.800449 kcal Electronic energy + Delta-G solvation = -26991.583653 eV Core-core repulsion = 23329.123215 eV Total energy + Delta-G solvation = -3662.460437 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.70140 -38.97618 -38.13372 -36.96813 -36.35689 -34.94476 -34.37563 -33.15537 -29.61989 -29.22111 -27.12222 -25.56925 -24.55992 -24.26207 -23.06810 -21.39141 -20.46840 -19.79166 -18.82645 -18.49913 -18.06538 -17.33730 -16.98627 -16.88491 -16.33935 -15.98402 -15.72425 -15.55790 -15.08995 -15.04289 -14.84040 -14.42507 -13.94467 -13.93068 -13.49958 -13.38549 -13.15450 -13.14925 -12.97782 -12.89357 -12.77958 -12.74650 -12.46959 -12.39217 -12.28431 -12.21239 -12.12124 -11.91760 -11.86387 -11.77176 -11.14991 -11.02905 -10.70216 -10.56565 -10.40336 -9.67915 -8.19617 -6.29101 -0.68348 1.37441 1.40536 1.47594 1.75854 2.41060 2.85805 2.93738 2.97720 3.09644 3.14107 3.32180 3.61143 3.81830 3.93859 4.00045 4.01400 4.09244 4.13486 4.32956 4.35561 4.39683 4.41961 4.46426 4.55578 4.58880 4.80818 4.82070 4.88473 4.93255 4.95549 5.02177 5.03347 5.11658 5.14495 5.20197 5.31916 5.37021 5.38298 5.51940 5.72029 5.95175 6.14522 6.25049 6.77413 7.38481 8.87283 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013337 B = 0.005455 C = 0.004606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.920370 B = 5131.428104 C = 6077.402053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.100 3.900 3 H 0.129 0.871 4 C -0.146 4.146 5 C -0.573 4.573 6 H 0.143 0.857 7 S 2.596 3.404 8 O -0.994 6.994 9 O -0.988 6.988 10 N -0.985 5.985 11 C 0.275 3.725 12 C -0.542 4.542 13 H 0.045 0.955 14 C 0.015 3.985 15 N -0.923 5.923 16 Si 0.949 3.051 17 H -0.281 1.281 18 H -0.275 1.275 19 H -0.266 1.266 20 C 0.149 3.851 21 C -0.186 4.186 22 C -0.169 4.169 23 C -0.168 4.168 24 C -0.142 4.142 25 C 0.066 3.934 26 O -0.385 6.385 27 H 0.057 0.943 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.016 0.984 33 H 0.035 0.965 34 H 0.267 0.733 35 H 0.061 0.939 36 H 0.092 0.908 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.114 0.886 42 H 0.085 0.915 43 H 0.105 0.895 44 H 0.121 0.879 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.509 6.438 -15.060 17.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.041 3.959 3 H 0.146 0.854 4 C -0.185 4.185 5 C -0.685 4.685 6 H 0.161 0.839 7 S 2.695 3.305 8 O -0.984 6.984 9 O -0.979 6.979 10 N -0.822 5.822 11 C 0.151 3.849 12 C -0.582 4.582 13 H 0.063 0.937 14 C -0.184 4.184 15 N -0.563 5.563 16 Si 0.774 3.226 17 H -0.206 1.206 18 H -0.200 1.200 19 H -0.191 1.191 20 C 0.023 3.977 21 C -0.206 4.206 22 C -0.206 4.206 23 C -0.205 4.205 24 C -0.180 4.180 25 C -0.012 4.012 26 O -0.304 6.304 27 H 0.076 0.924 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.110 0.890 31 H 0.105 0.895 32 H 0.034 0.966 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.111 0.889 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.115 0.885 40 H 0.118 0.882 41 H 0.132 0.868 42 H 0.104 0.896 43 H 0.123 0.877 44 H 0.139 0.861 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.993 6.761 -14.408 17.384 hybrid contribution -0.942 -0.638 1.267 1.703 sum 6.051 6.123 -13.140 15.709 Atomic orbital electron populations 1.22514 0.95572 1.02993 1.03818 1.22142 0.94119 0.96617 0.83020 0.85383 1.22203 1.02766 0.91286 1.02280 1.30378 1.13146 1.08420 1.16575 0.83930 1.05254 0.73930 0.74453 0.76832 1.93557 1.78959 1.81687 1.44239 1.93450 1.30391 1.85819 1.88218 1.57163 1.24458 1.24145 1.76395 1.18569 0.76962 0.95665 0.93659 1.21768 0.93091 1.42088 1.01213 0.93691 1.25629 0.95057 0.96118 1.01638 1.69968 0.98323 1.48929 1.39067 0.85749 0.77558 0.78917 0.80335 1.20636 1.19958 1.19127 1.20877 0.92955 0.91143 0.92705 1.22667 0.99134 1.05830 0.92931 1.23016 1.03005 0.91475 1.03142 1.23255 1.00977 0.98855 0.97384 1.22252 1.02616 1.01310 0.91825 1.22642 0.99559 0.81319 0.97662 1.87958 1.74075 1.25376 1.43029 0.92377 0.90637 0.90427 0.88996 0.89548 0.96633 0.94703 0.92433 0.92038 0.88943 0.88007 0.87777 0.88457 0.88167 0.86806 0.89597 0.87690 0.86110 0.91855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.53 8.65 71.98 0.62 -2.91 16 2 C 0.10 1.96 3.91 30.63 0.12 2.08 16 3 H 0.13 1.97 8.14 -2.39 -0.02 1.96 16 4 C -0.15 -3.51 4.93 30.69 0.15 -3.36 16 5 C -0.57 -15.96 2.63 30.71 0.08 -15.88 16 6 H 0.14 3.89 6.62 -2.39 -0.02 3.87 16 7 S 2.60 101.18 4.77 -56.49 -0.27 100.91 16 8 O -0.99 -48.77 17.31 -127.65 -2.21 -50.97 16 9 O -0.99 -39.79 16.09 -127.65 -2.05 -41.84 16 10 N -0.98 -40.06 2.57 -519.85 -1.33 -41.39 16 11 C 0.27 13.56 4.88 85.63 0.42 13.97 16 12 C -0.54 -30.92 9.34 25.60 0.24 -30.68 16 13 H 0.04 2.63 7.81 -2.91 -0.02 2.61 16 14 C 0.01 0.85 5.46 84.65 0.46 1.31 16 15 N -0.92 -53.51 13.29 21.44 0.28 -53.22 16 16 Si 0.95 45.18 29.54 68.60 2.03 47.20 16 17 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 18 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 19 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 20 C 0.15 5.14 6.09 86.38 0.53 5.66 16 21 C -0.19 -5.04 4.07 -10.79 -0.04 -5.08 16 22 C -0.17 -3.63 10.25 30.60 0.31 -3.32 16 23 C -0.17 -3.30 8.34 30.60 0.26 -3.04 16 24 C -0.14 -3.23 4.88 30.68 0.15 -3.08 16 25 C 0.07 1.23 6.52 72.01 0.47 1.70 16 26 O -0.39 -8.28 10.60 -148.98 -1.58 -9.86 16 27 H 0.06 1.17 4.98 -2.38 -0.01 1.16 16 28 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.02 0.81 7.86 -2.39 -0.02 0.80 16 33 H 0.03 1.73 7.06 -2.38 -0.02 1.71 16 34 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 35 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.09 3.01 6.29 -2.38 -0.01 2.99 16 37 H 0.10 3.01 7.17 -2.39 -0.02 2.99 16 38 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.10 1.91 8.03 -2.39 -0.02 1.89 16 41 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.09 1.97 8.02 -2.38 -0.02 1.95 16 43 H 0.10 2.33 4.36 -2.39 -0.01 2.32 16 44 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.06 1.13 6.34 -2.39 -0.02 1.11 16 Total: -1.00 -71.93 359.71 -0.40 -72.33 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: 0.97 Total: 19.47 kcal Atomic # 6 Polarization: -46.39 SS G_CDS: 3.76 Total: -42.62 kcal Atomic # 7 Polarization: -93.57 SS G_CDS: -1.05 Total: -94.61 kcal Atomic # 8 Polarization: -96.83 SS G_CDS: -5.84 Total: -102.68 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.20 kcal Atomic # 16 Polarization: 101.18 SS G_CDS: -0.27 Total: 100.91 kcal Total: -71.93 -0.40 -72.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332174201.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.475 kcal (2) G-P(sol) polarization free energy of solvation -71.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds