Wall clock time and date at job start Tue Mar 31 2020 12:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 110.28497 * 2 1 4 4 C 1.54660 * 110.17849 * 122.12503 * 2 1 3 5 5 C 1.54626 * 101.68224 * 144.68154 * 4 2 1 6 6 H 1.08997 * 110.60196 * 93.72302 * 5 4 2 7 7 N 1.46511 * 110.48644 * 216.30780 * 5 4 2 8 8 C 1.34778 * 119.99981 * 201.22816 * 7 5 4 9 9 O 1.21585 * 120.00168 * 359.97438 * 8 7 5 10 10 N 1.34771 * 119.99584 * 179.97438 * 8 7 5 11 11 C 1.46508 * 119.99839 * 179.97438 * 10 8 7 12 12 C 1.50695 * 109.46844 * 179.97438 * 11 10 8 13 13 H 1.07993 * 120.00582 * 359.97438 * 12 11 10 14 14 C 1.37882 * 119.99471 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00319 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99828 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47076 * 59.99983 * 16 14 12 18 18 H 1.48499 * 109.47463 * 180.02562 * 16 14 12 19 19 H 1.48508 * 109.46925 * 300.00145 * 16 14 12 20 20 C 1.51286 * 104.19739 * 334.98463 * 5 4 2 21 21 O 1.21281 * 124.94336 * 196.27544 * 20 5 4 22 22 N 1.34418 * 110.11169 * 16.25133 * 20 5 4 23 23 C 1.39920 * 124.34639 * 180.40582 * 22 20 5 24 24 C 1.38877 * 120.07000 * 66.39572 * 23 22 20 25 25 C 1.38117 * 119.93016 * 180.31985 * 24 23 22 26 26 C 1.38285 * 120.06714 * 359.93352 * 25 24 23 27 27 C 1.38275 * 120.14520 * 0.04211 * 26 25 24 28 28 C 1.38113 * 120.07111 * 0.02562 * 27 26 25 29 29 H 1.08992 * 109.47152 * 176.56258 * 1 2 3 30 30 H 1.09000 * 109.46725 * 296.56151 * 1 2 3 31 31 H 1.08994 * 109.46767 * 56.56294 * 1 2 3 32 32 H 1.08996 * 111.19341 * 26.50665 * 4 2 1 33 33 H 1.08997 * 110.85333 * 262.69977 * 4 2 1 34 34 H 0.96993 * 119.99631 * 21.22435 * 7 5 4 35 35 H 0.97001 * 120.00195 * 0.02562 * 10 8 7 36 36 H 1.08997 * 109.46771 * 300.00114 * 11 10 8 37 37 H 1.08995 * 109.46919 * 59.99857 * 11 10 8 38 38 H 0.96995 * 120.00117 * 179.97438 * 15 14 12 39 39 H 1.07994 * 120.03353 * 0.25001 * 24 23 22 40 40 H 1.07992 * 119.96581 * 179.97438 * 25 24 23 41 41 H 1.07997 * 119.92238 * 180.02562 * 26 25 24 42 42 H 1.08003 * 119.96812 * 179.97438 * 27 26 25 43 43 H 1.07996 * 120.03991 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0636 -0.7720 1.2294 5 6 3.3313 -1.4430 0.6518 6 1 4.2103 -0.8257 0.8373 7 7 3.5128 -2.7777 1.2281 8 6 4.7287 -3.3590 1.2122 9 8 5.6748 -2.7759 0.7191 10 7 4.8956 -4.5865 1.7427 11 6 6.2172 -5.2187 1.7249 12 6 6.1338 -6.5755 2.3752 13 1 5.1909 -6.9313 2.7634 14 6 7.2614 -7.3628 2.4747 15 7 8.4098 -6.9293 2.0024 16 14 7.1579 -9.0450 3.2801 17 1 6.1933 -9.8925 2.5342 18 1 8.4974 -9.6857 3.2622 19 1 6.7007 -8.8939 4.6850 20 6 3.0561 -1.5402 -0.8326 21 8 3.6652 -2.2472 -1.6072 22 7 2.0379 -0.7293 -1.1680 23 6 1.5312 -0.5933 -2.4651 24 6 0.8881 -1.6616 -3.0765 25 6 0.3949 -1.5264 -4.3595 26 6 0.5398 -0.3283 -5.0347 27 6 1.1793 0.7374 -4.4287 28 6 1.6759 0.6082 -3.1464 29 1 -0.3633 -1.0257 -0.0616 30 1 -0.3633 0.4595 0.9192 31 1 -0.3632 0.5662 -0.8575 32 1 1.3459 -1.5196 1.5671 33 1 2.3189 -0.0863 2.0373 34 1 2.7579 -3.2429 1.6211 35 1 4.1407 -5.0518 2.1358 36 1 6.5530 -5.3294 0.6939 37 1 6.9249 -4.5965 2.2727 38 1 9.2030 -7.4830 2.0727 39 1 0.7746 -2.5975 -2.5496 40 1 -0.1050 -2.3568 -4.8356 41 1 0.1530 -0.2250 -6.0377 42 1 1.2913 1.6717 -4.9588 43 1 2.1756 1.4407 -2.6737 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334075977.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:42 Heat of formation + Delta-G solvation = -27.616651 kcal Electronic energy + Delta-G solvation = -26037.657346 eV Core-core repulsion = 22275.999735 eV Total energy + Delta-G solvation = -3761.657611 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.27167 -39.28394 -38.47651 -36.81710 -34.72322 -33.93917 -32.50196 -32.05659 -31.18712 -30.27167 -28.82758 -26.90462 -24.64456 -23.31201 -23.00222 -22.38897 -21.42811 -20.38776 -19.60038 -18.24357 -17.56529 -16.95451 -16.50481 -16.19378 -15.81103 -15.42343 -14.92189 -14.69379 -14.54056 -14.16621 -13.96569 -13.79041 -13.67655 -13.48784 -13.24903 -12.96877 -12.84836 -12.64485 -12.47790 -11.90596 -11.85225 -11.74604 -11.71335 -11.43215 -11.21956 -10.92412 -10.84418 -10.25461 -10.22004 -9.56208 -9.37288 -9.32887 -9.19682 -8.76392 -8.65983 -8.52166 -7.71402 -6.09726 -4.16289 1.00439 1.14321 2.44836 2.69325 3.29283 3.32000 3.34671 3.40017 3.47416 3.92848 4.10994 4.33798 4.37318 4.50738 4.62150 4.69914 4.71205 4.81871 4.86795 5.03314 5.15106 5.17590 5.22313 5.25995 5.31289 5.35694 5.48018 5.54054 5.67077 5.74444 5.79526 6.08764 6.20921 6.25459 6.40468 6.65819 6.85817 6.94766 7.12150 7.57098 7.58623 7.65141 7.93746 8.08490 8.19068 8.81440 8.98111 9.38243 9.53285 11.00560 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021479 B = 0.002630 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.287920 B =10643.150461 C =11177.331794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.134 3.866 3 H 0.086 0.914 4 C -0.132 4.132 5 C 0.143 3.857 6 H 0.125 0.875 7 N -0.740 5.740 8 C 0.696 3.304 9 O -0.587 6.587 10 N -0.727 5.727 11 C 0.268 3.732 12 C -0.542 4.542 13 H 0.062 0.938 14 C 0.063 3.937 15 N -0.885 5.885 16 Si 0.904 3.096 17 H -0.276 1.276 18 H -0.285 1.285 19 H -0.276 1.276 20 C 0.503 3.497 21 O -0.485 6.485 22 N -0.583 5.583 23 C 0.158 3.842 24 C -0.111 4.111 25 C -0.108 4.108 26 C -0.124 4.124 27 C -0.110 4.110 28 C -0.123 4.123 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.092 0.908 33 H 0.102 0.898 34 H 0.395 0.605 35 H 0.386 0.614 36 H 0.025 0.975 37 H 0.025 0.975 38 H 0.266 0.734 39 H 0.122 0.878 40 H 0.126 0.874 41 H 0.124 0.876 42 H 0.125 0.875 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.499 17.917 -5.932 29.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.031 3.969 3 H 0.104 0.896 4 C -0.171 4.171 5 C 0.033 3.967 6 H 0.142 0.858 7 N -0.398 5.398 8 C 0.396 3.604 9 O -0.465 6.465 10 N -0.379 5.379 11 C 0.147 3.853 12 C -0.580 4.580 13 H 0.080 0.920 14 C -0.140 4.140 15 N -0.523 5.523 16 Si 0.731 3.269 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.201 1.201 20 C 0.288 3.712 21 O -0.354 6.354 22 N -0.316 5.316 23 C 0.067 3.933 24 C -0.131 4.131 25 C -0.126 4.126 26 C -0.142 4.142 27 C -0.129 4.129 28 C -0.143 4.143 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.111 0.889 33 H 0.121 0.879 34 H 0.229 0.771 35 H 0.218 0.782 36 H 0.043 0.957 37 H 0.043 0.957 38 H 0.076 0.924 39 H 0.140 0.860 40 H 0.144 0.856 41 H 0.142 0.858 42 H 0.143 0.857 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -20.970 17.941 -6.853 28.436 hybrid contribution -0.675 -1.342 0.673 1.646 sum -21.646 16.599 -6.180 27.969 Atomic orbital electron populations 1.22086 0.93575 1.03093 1.02855 1.21785 0.95334 0.96049 0.83730 0.89570 1.23060 0.96259 1.00467 0.97293 1.21225 0.99901 0.86254 0.89366 0.85755 1.44917 1.10884 1.18125 1.65859 1.16097 0.82464 0.82294 0.79570 1.90892 1.39645 1.64586 1.51367 1.45673 1.14687 1.15570 1.61982 1.18984 0.77304 0.91439 0.97604 1.21185 0.95672 1.01162 1.39984 0.92024 1.24948 0.95059 0.98617 0.95425 1.69972 0.99729 1.37693 1.44875 0.86472 0.77297 0.83373 0.79712 1.20118 1.21093 1.20114 1.21719 0.78720 0.78878 0.91851 1.90799 1.49782 1.38350 1.56504 1.45899 1.34990 1.44698 1.06032 1.17417 0.96858 0.94385 0.84591 1.21286 0.97207 0.98645 0.95943 1.21059 0.99652 0.97788 0.94149 1.21187 0.99745 0.93288 1.00013 1.21019 0.98222 0.99090 0.94546 1.21235 1.00526 0.97579 0.94954 0.91754 0.90693 0.91906 0.88950 0.87941 0.77102 0.78243 0.95674 0.95709 0.92424 0.85958 0.85617 0.85848 0.85654 0.85787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.90 8.85 37.16 0.33 -0.57 16 2 C 0.13 0.99 3.87 -66.91 -0.26 0.73 16 3 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -0.96 6.37 -25.00 -0.16 -1.12 16 5 C 0.14 1.90 3.22 -67.93 -0.22 1.68 16 6 H 0.12 1.80 7.66 -51.93 -0.40 1.41 16 7 N -0.74 -11.34 5.16 -58.68 -0.30 -11.64 16 8 C 0.70 15.13 8.52 -86.92 -0.74 14.39 16 9 O -0.59 -15.56 16.05 5.29 0.08 -15.47 16 10 N -0.73 -16.27 5.55 -66.42 -0.37 -16.63 16 11 C 0.27 7.46 5.43 -5.19 -0.03 7.43 16 12 C -0.54 -15.15 9.28 -34.44 -0.32 -15.47 16 13 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 14 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 15 N -0.89 -26.84 13.29 55.43 0.74 -26.11 16 16 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 17 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 18 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 20 C 0.50 7.97 7.54 -10.86 -0.08 7.89 16 21 O -0.48 -10.49 17.65 5.56 0.10 -10.39 16 22 N -0.58 -6.77 2.82 -105.14 -0.30 -7.07 16 23 C 0.16 1.84 4.54 -83.69 -0.38 1.46 16 24 C -0.11 -1.29 9.86 -39.39 -0.39 -1.68 16 25 C -0.11 -1.03 10.04 -39.61 -0.40 -1.43 16 26 C -0.12 -1.05 10.04 -39.55 -0.40 -1.45 16 27 C -0.11 -0.94 10.04 -39.61 -0.40 -1.34 16 28 C -0.12 -1.23 9.94 -39.39 -0.39 -1.62 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.38 7.89 -51.93 -0.41 -0.03 16 32 H 0.09 0.55 7.58 -51.93 -0.39 0.16 16 33 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.39 4.63 8.40 -40.82 -0.34 4.28 16 35 H 0.39 7.28 8.34 -40.82 -0.34 6.94 16 36 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.02 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 39 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 40 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 41 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 42 H 0.13 0.76 8.06 -52.48 -0.42 0.34 16 43 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 369.28 15.07 5.56 5.56 Total: -1.00 -38.72 369.28 -9.50 -48.22 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -6.07 Total: 6.62 kcal Atomic # 6 Polarization: 14.55 SS G_CDS: -3.93 Total: 10.62 kcal Atomic # 7 Polarization: -61.23 SS G_CDS: -0.23 Total: -61.46 kcal Atomic # 8 Polarization: -26.04 SS G_CDS: 0.18 Total: -25.86 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -38.72 -9.50 -48.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334075977.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.602 kcal (2) G-P(sol) polarization free energy of solvation -38.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds