Wall clock time and date at job start Tue Mar 31 2020 12:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 110.28497 * 2 1 4 4 C 1.54660 * 110.17849 * 122.12503 * 2 1 3 5 5 C 1.54626 * 101.68224 * 144.68154 * 4 2 1 6 6 H 1.08997 * 110.60196 * 93.72302 * 5 4 2 7 7 N 1.46511 * 110.48644 * 216.30780 * 5 4 2 8 8 C 1.34778 * 119.99981 * 201.22816 * 7 5 4 9 9 O 1.21585 * 120.00168 * 359.97438 * 8 7 5 10 10 N 1.34771 * 119.99584 * 179.97438 * 8 7 5 11 11 C 1.46508 * 119.99839 * 179.97438 * 10 8 7 12 12 C 1.50695 * 109.46844 * 179.97438 * 11 10 8 13 13 H 1.07993 * 120.00582 * 359.97438 * 12 11 10 14 14 C 1.37882 * 119.99471 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00319 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99828 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47076 * 59.99983 * 16 14 12 18 18 H 1.48499 * 109.47463 * 180.02562 * 16 14 12 19 19 H 1.48508 * 109.46925 * 300.00145 * 16 14 12 20 20 C 1.51286 * 104.19739 * 334.98463 * 5 4 2 21 21 O 1.21281 * 124.94336 * 196.27544 * 20 5 4 22 22 N 1.34418 * 110.11169 * 16.25133 * 20 5 4 23 23 C 1.39920 * 124.34639 * 180.40582 * 22 20 5 24 24 C 1.38877 * 120.07000 * 66.39572 * 23 22 20 25 25 C 1.38117 * 119.93016 * 180.31985 * 24 23 22 26 26 C 1.38285 * 120.06714 * 359.93352 * 25 24 23 27 27 C 1.38275 * 120.14520 * 0.04211 * 26 25 24 28 28 C 1.38113 * 120.07111 * 0.02562 * 27 26 25 29 29 H 1.08992 * 109.47152 * 176.56258 * 1 2 3 30 30 H 1.09000 * 109.46725 * 296.56151 * 1 2 3 31 31 H 1.08994 * 109.46767 * 56.56294 * 1 2 3 32 32 H 1.08996 * 111.19341 * 26.50665 * 4 2 1 33 33 H 1.08997 * 110.85333 * 262.69977 * 4 2 1 34 34 H 0.96993 * 119.99631 * 21.22435 * 7 5 4 35 35 H 0.97001 * 120.00195 * 0.02562 * 10 8 7 36 36 H 1.08997 * 109.46771 * 300.00114 * 11 10 8 37 37 H 1.08995 * 109.46919 * 59.99857 * 11 10 8 38 38 H 0.96995 * 120.00117 * 179.97438 * 15 14 12 39 39 H 1.07994 * 120.03353 * 0.25001 * 24 23 22 40 40 H 1.07992 * 119.96581 * 179.97438 * 25 24 23 41 41 H 1.07997 * 119.92238 * 180.02562 * 26 25 24 42 42 H 1.08003 * 119.96812 * 179.97438 * 27 26 25 43 43 H 1.07996 * 120.03991 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0636 -0.7720 1.2294 5 6 3.3313 -1.4430 0.6518 6 1 4.2103 -0.8257 0.8373 7 7 3.5128 -2.7777 1.2281 8 6 4.7287 -3.3590 1.2122 9 8 5.6748 -2.7759 0.7191 10 7 4.8956 -4.5865 1.7427 11 6 6.2172 -5.2187 1.7249 12 6 6.1338 -6.5755 2.3752 13 1 5.1909 -6.9313 2.7634 14 6 7.2614 -7.3628 2.4747 15 7 8.4098 -6.9293 2.0024 16 14 7.1579 -9.0450 3.2801 17 1 6.1933 -9.8925 2.5342 18 1 8.4974 -9.6857 3.2622 19 1 6.7007 -8.8939 4.6850 20 6 3.0561 -1.5402 -0.8326 21 8 3.6652 -2.2472 -1.6072 22 7 2.0379 -0.7293 -1.1680 23 6 1.5312 -0.5933 -2.4651 24 6 0.8881 -1.6616 -3.0765 25 6 0.3949 -1.5264 -4.3595 26 6 0.5398 -0.3283 -5.0347 27 6 1.1793 0.7374 -4.4287 28 6 1.6759 0.6082 -3.1464 29 1 -0.3633 -1.0257 -0.0616 30 1 -0.3633 0.4595 0.9192 31 1 -0.3632 0.5662 -0.8575 32 1 1.3459 -1.5196 1.5671 33 1 2.3189 -0.0863 2.0373 34 1 2.7579 -3.2429 1.6211 35 1 4.1407 -5.0518 2.1358 36 1 6.5530 -5.3294 0.6939 37 1 6.9249 -4.5965 2.2727 38 1 9.2030 -7.4830 2.0727 39 1 0.7746 -2.5975 -2.5496 40 1 -0.1050 -2.3568 -4.8356 41 1 0.1530 -0.2250 -6.0377 42 1 1.2913 1.6717 -4.9588 43 1 2.1756 1.4407 -2.6737 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334075977.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:41 Heat of formation + Delta-G solvation = -56.867339 kcal Electronic energy + Delta-G solvation = -26038.925751 eV Core-core repulsion = 22275.999735 eV Total energy + Delta-G solvation = -3762.926016 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.29750 -40.73525 -39.56913 -37.95800 -36.31363 -35.72174 -34.38071 -33.18160 -31.93266 -31.18372 -29.91554 -28.76333 -25.60056 -24.77136 -23.87775 -23.66819 -22.29348 -22.06546 -20.63319 -19.94390 -18.56323 -18.13908 -17.88952 -17.55672 -17.15365 -16.65226 -16.34531 -16.25384 -15.64218 -15.51491 -15.14635 -14.93956 -14.85662 -14.60808 -14.38238 -14.04300 -13.98503 -13.69569 -13.65130 -13.48563 -13.02782 -12.91340 -12.68105 -12.55053 -12.39337 -12.23477 -12.12029 -11.92716 -11.57910 -11.50775 -11.28424 -10.79661 -10.46677 -10.18724 -9.95128 -9.66610 -9.40759 -8.28327 -6.45599 0.22194 0.38852 1.23135 1.42706 1.47949 1.55981 1.70471 1.99312 2.25179 2.39621 2.72796 3.06142 3.28775 3.37981 3.51670 3.80471 3.91762 3.96599 3.99978 4.20789 4.24326 4.32574 4.47538 4.54074 4.59676 4.78827 4.83382 4.96370 5.02261 5.03993 5.08154 5.25282 5.30262 5.36693 5.38878 5.44012 5.47453 5.52773 5.63463 5.65226 5.83749 5.92850 6.05934 6.19287 6.65819 7.05738 7.22775 7.27744 7.69868 8.84203 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021479 B = 0.002630 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.287920 B =10643.150461 C =11177.331794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.126 3.874 3 H 0.110 0.890 4 C -0.112 4.112 5 C 0.135 3.865 6 H 0.110 0.890 7 N -0.715 5.715 8 C 0.693 3.307 9 O -0.640 6.640 10 N -0.721 5.721 11 C 0.287 3.713 12 C -0.555 4.555 13 H 0.086 0.914 14 C 0.001 3.999 15 N -0.933 5.933 16 Si 0.989 3.011 17 H -0.264 1.264 18 H -0.285 1.285 19 H -0.258 1.258 20 C 0.491 3.509 21 O -0.561 6.561 22 N -0.569 5.569 23 C 0.130 3.870 24 C -0.135 4.135 25 C -0.115 4.115 26 C -0.122 4.122 27 C -0.108 4.108 28 C -0.131 4.131 29 H 0.054 0.946 30 H 0.104 0.896 31 H 0.058 0.942 32 H 0.113 0.887 33 H 0.138 0.862 34 H 0.416 0.584 35 H 0.405 0.595 36 H -0.023 1.023 37 H -0.011 1.011 38 H 0.269 0.731 39 H 0.105 0.895 40 H 0.142 0.858 41 H 0.153 0.847 42 H 0.155 0.845 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.826 18.752 -4.842 32.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.025 3.975 3 H 0.127 0.873 4 C -0.150 4.150 5 C 0.025 3.975 6 H 0.127 0.873 7 N -0.373 5.373 8 C 0.393 3.607 9 O -0.522 6.522 10 N -0.375 5.375 11 C 0.164 3.836 12 C -0.593 4.593 13 H 0.104 0.896 14 C -0.198 4.198 15 N -0.571 5.571 16 Si 0.812 3.188 17 H -0.188 1.188 18 H -0.210 1.210 19 H -0.182 1.182 20 C 0.278 3.722 21 O -0.437 6.437 22 N -0.300 5.300 23 C 0.040 3.960 24 C -0.155 4.155 25 C -0.133 4.133 26 C -0.140 4.140 27 C -0.127 4.127 28 C -0.150 4.150 29 H 0.073 0.927 30 H 0.123 0.877 31 H 0.077 0.923 32 H 0.131 0.869 33 H 0.156 0.844 34 H 0.254 0.746 35 H 0.241 0.759 36 H -0.005 1.005 37 H 0.007 0.993 38 H 0.078 0.922 39 H 0.123 0.877 40 H 0.160 0.840 41 H 0.171 0.829 42 H 0.173 0.827 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -24.456 18.842 -5.724 31.399 hybrid contribution 0.283 -1.451 0.209 1.493 sum -24.173 17.391 -5.515 30.285 Atomic orbital electron populations 1.22045 0.91687 1.02806 1.04238 1.22223 0.96788 0.96605 0.81850 0.87264 1.23185 0.93006 1.00906 0.97866 1.21534 1.02501 0.84922 0.88524 0.87267 1.44614 1.09169 1.18856 1.64649 1.16315 0.83754 0.81838 0.78781 1.90853 1.42161 1.65795 1.53354 1.45246 1.13516 1.16091 1.62641 1.18393 0.79136 0.91940 0.94172 1.21567 0.96898 1.00933 1.39927 0.89638 1.26132 0.94344 1.03573 0.95751 1.70153 1.00836 1.39790 1.46317 0.85146 0.77458 0.77032 0.79175 1.18815 1.21048 1.18237 1.22182 0.78941 0.78558 0.92473 1.90751 1.52684 1.41843 1.58381 1.45968 1.33317 1.43279 1.07437 1.17692 0.97950 0.95340 0.85013 1.21335 0.98854 0.98154 0.97121 1.21331 0.99445 0.99087 0.93476 1.21575 0.98814 0.92531 1.01080 1.21417 0.96982 1.00303 0.93961 1.21444 1.00722 0.97190 0.95682 0.92693 0.87700 0.92254 0.86859 0.84395 0.74594 0.75928 1.00535 0.99350 0.92213 0.87657 0.84021 0.82937 0.82732 0.84557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 8.85 71.98 0.64 -0.61 16 2 C 0.13 1.56 3.87 45.51 0.18 1.73 16 3 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 4 C -0.11 -1.28 6.37 31.71 0.20 -1.08 16 5 C 0.14 3.57 3.22 44.98 0.14 3.71 16 6 H 0.11 3.26 7.66 -2.39 -0.02 3.24 16 7 N -0.71 -21.96 5.16 -457.83 -2.36 -24.32 16 8 C 0.69 31.44 8.52 179.06 1.53 32.96 16 9 O -0.64 -36.19 16.05 -3.98 -0.06 -36.25 16 10 N -0.72 -33.35 5.55 -482.31 -2.68 -36.03 16 11 C 0.29 16.89 5.43 85.63 0.46 17.35 16 12 C -0.56 -31.52 9.28 25.60 0.24 -31.28 16 13 H 0.09 4.33 7.60 -2.91 -0.02 4.31 16 14 C 0.00 0.08 5.46 84.66 0.46 0.54 16 15 N -0.93 -58.46 13.29 21.45 0.28 -58.17 16 16 Si 0.99 43.51 29.54 68.60 2.03 45.54 16 17 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 18 H -0.29 -12.42 7.11 99.48 0.71 -11.71 16 19 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 20 C 0.49 16.24 7.54 87.90 0.66 16.90 16 21 O -0.56 -26.12 17.65 -3.03 -0.05 -26.18 16 22 N -0.57 -13.14 2.82 -605.15 -1.71 -14.85 16 23 C 0.13 3.05 4.54 38.16 0.17 3.22 16 24 C -0.13 -3.23 9.86 22.39 0.22 -3.01 16 25 C -0.11 -2.14 10.04 22.25 0.22 -1.91 16 26 C -0.12 -1.82 10.04 22.29 0.22 -1.59 16 27 C -0.11 -1.61 10.04 22.25 0.22 -1.39 16 28 C -0.13 -2.46 9.94 22.39 0.22 -2.24 16 29 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.06 0.57 7.89 -2.39 -0.02 0.55 16 32 H 0.11 0.90 7.58 -2.39 -0.02 0.88 16 33 H 0.14 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.42 9.15 8.40 -92.71 -0.78 8.37 16 35 H 0.41 15.23 8.34 -92.71 -0.77 14.45 16 36 H -0.02 -1.58 8.14 -2.39 -0.02 -1.60 16 37 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 38 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 39 H 0.11 2.75 8.06 -2.91 -0.02 2.73 16 40 H 0.14 2.04 8.06 -2.91 -0.02 2.01 16 41 H 0.15 1.35 8.06 -2.91 -0.02 1.32 16 42 H 0.16 1.36 8.06 -2.91 -0.02 1.34 16 43 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 Total: -1.00 -93.23 369.28 0.74 -92.49 By element: Atomic # 1 Polarization: 24.97 SS G_CDS: -0.51 Total: 24.45 kcal Atomic # 6 Polarization: 27.51 SS G_CDS: 5.80 Total: 33.31 kcal Atomic # 7 Polarization: -126.91 SS G_CDS: -6.46 Total: -133.37 kcal Atomic # 8 Polarization: -62.31 SS G_CDS: -0.12 Total: -62.43 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -93.23 0.74 -92.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334075977.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.626 kcal (2) G-P(sol) polarization free energy of solvation -93.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds