Wall clock time and date at job start Tue Mar 31 2020 12:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.67024 * 2 1 4 4 C 1.53348 * 109.70141 * 120.51839 * 2 1 3 5 5 C 1.52921 * 108.66939 * 187.28055 * 4 2 1 6 6 N 1.45747 * 110.49153 * 309.24420 * 5 4 2 7 7 C 1.33356 * 124.10232 * 19.07965 * 6 5 4 8 8 O 1.21282 * 118.24339 * 177.77624 * 7 6 5 9 9 C 1.50171 * 123.51100 * 357.77332 * 7 6 5 10 10 H 1.08999 * 109.33145 * 137.67243 * 9 7 6 11 11 N 1.46497 * 109.40061 * 257.45298 * 9 7 6 12 12 C 1.34776 * 120.00451 * 275.42804 * 11 9 7 13 13 O 1.21582 * 119.99644 * 359.97438 * 12 11 9 14 14 N 1.34774 * 120.00279 * 180.02562 * 12 11 9 15 15 C 1.39959 * 120.00239 * 174.29135 * 14 12 11 16 16 C 1.39290 * 119.94396 * 325.43526 * 15 14 12 17 17 C 1.38482 * 120.42871 * 179.97438 * 16 15 14 18 18 C 1.37681 * 120.32262 * 0.02562 * 17 16 15 19 19 C 1.40741 * 119.88315 * 359.97438 * 18 17 16 20 20 C 1.41411 * 120.21258 * 180.02562 * 19 18 17 21 21 H 1.07998 * 119.99795 * 34.18802 * 20 19 18 22 22 C 1.39926 * 120.00265 * 214.19084 * 20 19 18 23 23 N 1.30829 * 120.00411 * 5.55322 * 22 20 19 24 24 Si 1.86804 * 120.00055 * 185.55562 * 22 20 19 25 25 H 1.48497 * 109.47119 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47007 * 120.00017 * 24 22 20 27 27 H 1.48504 * 109.47047 * 239.99964 * 24 22 20 28 28 C 1.38230 * 119.94765 * 145.41334 * 15 14 12 29 29 H 1.09004 * 109.47410 * 180.49623 * 1 2 3 30 30 H 1.09003 * 109.47380 * 300.49414 * 1 2 3 31 31 H 1.08999 * 109.47521 * 60.49784 * 1 2 3 32 32 H 1.08997 * 109.60172 * 307.03898 * 4 2 1 33 33 H 1.08998 * 109.60344 * 67.36565 * 4 2 1 34 34 H 1.09001 * 109.29787 * 69.56341 * 5 4 2 35 35 H 1.09005 * 109.29824 * 189.14038 * 5 4 2 36 36 H 0.96993 * 117.95346 * 199.07227 * 6 5 4 37 37 H 0.97010 * 119.99956 * 95.43103 * 11 9 7 38 38 H 0.97001 * 120.00201 * 354.28801 * 14 12 11 39 39 H 1.07999 * 119.78480 * 359.69941 * 16 15 14 40 40 H 1.08000 * 119.83935 * 180.02562 * 17 16 15 41 41 H 1.08003 * 120.06105 * 179.97438 * 18 17 16 42 42 H 0.97000 * 120.00551 * 180.02562 * 23 22 20 43 43 H 1.07998 * 120.16251 * 0.04603 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8969 1.0263 0.0000 4 6 2.0470 -0.7331 1.2437 5 6 3.5649 -0.5630 1.3166 6 7 4.1799 -0.9185 0.0439 7 6 3.5211 -0.9781 -1.1140 8 8 4.1473 -1.2460 -2.1175 9 6 2.0453 -0.7315 -1.2419 10 1 1.8566 -0.1219 -2.1256 11 7 1.3477 -2.0127 -1.3766 12 6 1.2336 -2.5939 -2.5872 13 8 1.7093 -2.0547 -3.5676 14 7 0.5914 -3.7723 -2.7112 15 6 0.3681 -4.3174 -3.9808 16 6 0.1137 -3.4781 -5.0629 17 6 -0.1081 -4.0067 -6.3235 18 6 -0.0801 -5.3690 -6.5208 19 6 0.1757 -6.2294 -5.4369 20 6 0.2066 -7.6297 -5.6317 21 1 0.5807 -8.0377 -6.5591 22 6 -0.2474 -8.4867 -4.6231 23 7 -0.8005 -7.9931 -3.5451 24 14 -0.0638 -10.3357 -4.8157 25 1 0.5884 -10.6356 -6.1157 26 1 0.7702 -10.8683 -3.7084 27 1 -1.4045 -10.9730 -4.7763 28 6 0.4008 -5.6878 -4.1588 29 1 -0.3634 -1.0276 0.0089 30 1 -0.3634 0.5215 0.8855 31 1 -0.3634 0.5061 -0.8944 32 1 1.5879 -0.3078 2.1361 33 1 1.7982 -1.7920 1.1738 34 1 3.8001 0.4747 1.5531 35 1 3.9628 -1.2098 2.0986 36 1 5.1277 -1.1244 0.0388 37 1 0.9678 -2.4427 -0.5944 38 1 0.2840 -4.2427 -1.9206 39 1 0.0849 -2.4084 -4.9170 40 1 -0.3041 -3.3471 -7.1559 41 1 -0.2541 -5.7767 -7.5057 42 1 -1.1149 -8.5872 -2.8457 43 1 0.5975 -6.3394 -3.3203 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334726274.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:01 Heat of formation + Delta-G solvation = -43.457234 kcal Electronic energy + Delta-G solvation = -26509.697246 eV Core-core repulsion = 22747.352735 eV Total energy + Delta-G solvation = -3762.344511 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.99542 -39.41013 -37.40304 -36.99589 -35.03899 -34.08518 -33.22758 -32.53076 -29.60002 -29.40973 -28.45141 -27.22527 -25.14663 -23.94583 -21.90990 -21.69775 -21.08515 -19.97877 -19.15853 -18.30587 -17.35874 -17.23466 -16.62905 -16.08794 -15.64573 -15.27608 -14.83524 -14.67877 -14.56053 -14.35586 -13.84522 -13.73803 -13.57732 -13.09180 -12.93931 -12.73714 -12.64141 -12.28225 -12.19334 -11.61240 -11.60453 -11.28437 -11.16703 -11.08885 -11.00916 -10.71100 -10.57904 -10.17490 -9.95548 -9.64819 -9.51500 -9.23522 -9.16880 -8.95415 -8.86659 -7.21388 -6.89734 -6.55177 -4.32468 2.33765 2.77577 2.95108 3.05976 3.12471 3.18397 3.24750 3.30348 3.77034 4.02400 4.18731 4.26022 4.28876 4.43484 4.63229 4.78260 4.86607 4.98714 5.07626 5.27273 5.35648 5.37718 5.45247 5.62005 5.70027 5.77705 5.94142 6.31176 6.43973 6.62404 6.70540 6.76176 6.81155 7.03864 7.14600 7.16464 7.28450 7.41821 7.71483 7.88588 8.01610 8.12210 8.17477 8.34098 8.49737 8.68081 8.97525 8.99847 9.11558 10.35449 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018264 B = 0.003136 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.667014 B = 8925.871681 C = 9401.363534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.104 4.104 3 H 0.093 0.907 4 C -0.135 4.135 5 C 0.111 3.889 6 N -0.725 5.725 7 C 0.499 3.501 8 O -0.520 6.520 9 C 0.164 3.836 10 H 0.119 0.881 11 N -0.735 5.735 12 C 0.697 3.303 13 O -0.552 6.552 14 N -0.677 5.677 15 C 0.160 3.840 16 C -0.214 4.214 17 C -0.092 4.092 18 C -0.220 4.220 19 C 0.121 3.879 20 C -0.468 4.468 21 H 0.077 0.923 22 C 0.074 3.926 23 N -0.817 5.817 24 Si 0.910 3.090 25 H -0.262 1.262 26 H -0.275 1.275 27 H -0.276 1.276 28 C -0.168 4.168 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.397 0.603 37 H 0.395 0.605 38 H 0.397 0.603 39 H 0.102 0.898 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.275 0.725 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.457 13.563 16.544 21.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.123 4.123 3 H 0.111 0.889 4 C -0.173 4.173 5 C -0.013 4.013 6 N -0.380 5.380 7 C 0.283 3.717 8 O -0.392 6.392 9 C 0.055 3.945 10 H 0.137 0.863 11 N -0.395 5.395 12 C 0.398 3.602 13 O -0.425 6.425 14 N -0.324 5.324 15 C 0.068 3.932 16 C -0.235 4.235 17 C -0.111 4.111 18 C -0.240 4.240 19 C 0.118 3.882 20 C -0.500 4.500 21 H 0.095 0.905 22 C -0.141 4.141 23 N -0.445 5.445 24 Si 0.735 3.265 25 H -0.186 1.186 26 H -0.201 1.201 27 H -0.201 1.201 28 C -0.190 4.190 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.107 0.893 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.232 0.768 37 H 0.230 0.770 38 H 0.231 0.769 39 H 0.120 0.880 40 H 0.110 0.890 41 H 0.112 0.888 42 H 0.086 0.914 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.870 13.922 15.282 20.871 hybrid contribution 0.087 -1.424 1.032 1.760 sum 2.956 12.498 16.314 20.763 Atomic orbital electron populations 1.21772 0.93275 1.02720 1.02412 1.21630 0.97564 0.99977 0.93159 0.88913 1.21996 0.94560 1.01831 0.98915 1.21355 0.93743 1.00749 0.85483 1.45576 1.13350 1.71390 1.07667 1.20787 0.90944 0.77146 0.82838 1.90856 1.67655 1.45639 1.35089 1.20676 0.87032 0.86127 1.00686 0.86299 1.44968 1.61854 1.23601 1.09108 1.15968 0.79367 0.81544 0.83337 1.90991 1.51084 1.64200 1.36252 1.42572 1.59913 1.21087 1.08805 1.17418 1.00836 0.92422 0.82563 1.20355 1.12602 0.97882 0.92653 1.20433 1.00450 0.94837 0.95334 1.21146 1.11146 0.92882 0.98828 1.17367 0.87498 0.93118 0.90239 1.19508 1.38318 0.90736 1.01409 0.90529 1.25797 0.92930 1.01071 0.94265 1.69777 1.30786 1.36945 1.06950 0.86234 0.78547 0.82350 0.79332 1.18615 1.20067 1.20148 1.21074 1.07740 0.90643 0.99521 0.92047 0.92056 0.91843 0.89267 0.90849 0.91580 0.90585 0.76765 0.76999 0.76920 0.87972 0.88977 0.88772 0.91449 0.86157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 8.91 37.16 0.33 -0.62 16 2 C -0.10 -0.73 2.58 -90.41 -0.23 -0.96 16 3 H 0.09 0.55 8.13 -51.93 -0.42 0.13 16 4 C -0.14 -0.69 5.28 -26.59 -0.14 -0.83 16 5 C 0.11 0.58 7.17 -4.49 -0.03 0.55 16 6 N -0.73 -6.81 5.45 -61.39 -0.33 -7.14 16 7 C 0.50 6.98 7.24 -11.87 -0.09 6.90 16 8 O -0.52 -10.38 17.36 5.54 0.10 -10.29 16 9 C 0.16 1.99 2.27 -69.31 -0.16 1.83 16 10 H 0.12 1.70 7.58 -51.93 -0.39 1.31 16 11 N -0.74 -9.75 4.21 -60.04 -0.25 -10.00 16 12 C 0.70 13.36 8.23 -86.92 -0.72 12.64 16 13 O -0.55 -13.11 13.36 5.28 0.07 -13.04 16 14 N -0.68 -13.31 5.34 -14.27 -0.08 -13.39 16 15 C 0.16 3.88 6.24 -83.76 -0.52 3.36 16 16 C -0.21 -5.28 8.65 -39.10 -0.34 -5.62 16 17 C -0.09 -2.22 10.02 -39.69 -0.40 -2.62 16 18 C -0.22 -5.64 9.79 -38.84 -0.38 -6.02 16 19 C 0.12 3.30 5.50 -106.85 -0.59 2.71 16 20 C -0.47 -12.72 9.04 -37.74 -0.34 -13.06 16 21 H 0.08 2.02 7.85 -52.49 -0.41 1.61 16 22 C 0.07 1.88 5.31 -17.35 -0.09 1.79 16 23 N -0.82 -21.10 10.96 55.55 0.61 -20.49 16 24 Si 0.91 19.18 29.56 -169.99 -5.03 14.15 16 25 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 26 H -0.28 -5.70 7.11 56.52 0.40 -5.29 16 27 H -0.28 -5.72 7.11 56.52 0.40 -5.31 16 28 C -0.17 -4.41 8.54 -38.69 -0.33 -4.74 16 29 H 0.06 0.43 6.79 -51.93 -0.35 0.08 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.07 0.42 6.96 -51.93 -0.36 0.05 16 34 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 35 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 36 H 0.40 3.53 8.80 -40.82 -0.36 3.17 16 37 H 0.39 3.94 6.58 -40.82 -0.27 3.67 16 38 H 0.40 6.51 8.84 -40.82 -0.36 6.15 16 39 H 0.10 2.50 6.51 -52.49 -0.34 2.16 16 40 H 0.09 1.96 8.06 -52.49 -0.42 1.54 16 41 H 0.09 2.26 8.06 -52.48 -0.42 1.83 16 42 H 0.27 6.47 8.30 -40.82 -0.34 6.13 16 43 H 0.12 3.21 6.46 -52.49 -0.34 2.87 16 LS Contribution 351.95 15.07 5.30 5.30 Total: -1.00 -35.77 351.95 -9.34 -45.11 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: -5.71 Total: 14.49 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: -4.02 Total: -4.70 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: -0.05 Total: -51.03 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: 0.17 Total: -23.32 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.03 Total: 14.15 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -35.77 -9.34 -45.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334726274.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.653 kcal (2) G-P(sol) polarization free energy of solvation -35.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds